Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g16110 Schrenkiella parvula HOM05D006017 ORTHO05D007821 1.1e-283 979.2 459 100.0
BcaB05g22107 Brassica carinata HOM05D006017 ORTHO05D007821 5.7e-272 940.3 459 95.2
C02p17670 Brassica napus HOM05D006017 ORTHO05D007821 1.1e-270 936.0 459 94.3
BcaC03g14354 Brassica carinata HOM05D006017 ORTHO05D007821 1.4e-270 935.6 459 94.3
BolC2t07897H Brassica oleracea HOM05D006017 ORTHO05D007821 3.1e-270 934.5 459 94.1
AL8G29200 Arabidopsis lyrata HOM05D006017 ORTHO05D007821 9.4e-267 922.9 457 93.7
A02p10590 Brassica napus HOM05D006017 ORTHO05D007821 9.4e-267 922.9 452 94.2
BraA02t06124Z Brassica rapa HOM05D006017 ORTHO05D007821 9.4e-267 922.9 452 94.2
Aa31LG3G9950 Aethionema arabicum HOM05D006017 ORTHO05D007821 1.2e-266 922.5 455 93.8
Carub.0008s1436 Capsella rubella HOM05D006017 ORTHO05D007821 1.8e-265 918.7 455 93.4
AT5G54080 Arabidopsis thaliana HOM05D006017 ORTHO05D007821 2.0e-264 915.2 457 92.8
CARHR267270 Cardamine hirsuta HOM05D006017 ORTHO05D007821 3.4e-264 914.4 457 93.4
THA.LOC104811882 Tarenaya hassleriana HOM05D006017 ORTHO05D007821 2.3e-252 875.2 455 87.9
Cpa.g.sc131.80 Carica papaya HOM05D006017 ORTHO05D007821 4.1e-238 827.8 431 87.0
Hma1.2p1_0416F.1_g148570 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 4.3e-235 817.8 452 82.7
Sopen12g005880 Solanum pennellii HOM05D006017 ORTHO05D007821 2.1e-234 815.5 447 81.9
TWI38G0439 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 2.8e-234 815.1 454 81.9
PGSC0003DMG400015330 Solanum tuberosum HOM05D006017 ORTHO05D007821 1.1e-233 813.1 447 81.9
Solyc12g014100.2 Solanum lycopersicum HOM05D006017 ORTHO05D007821 2.3e-233 812.0 447 81.4
Atru.chr2.2344 Acer truncatum HOM05D006017 ORTHO05D007821 1.5e-232 809.3 445 82.9
Thecc.07G102400 Theobroma cacao HOM05D006017 ORTHO05D007821 2.0e-232 808.9 432 85.6
ClCG07G009900 Citrullus lanatus HOM05D006017 ORTHO05D007821 9.9e-232 806.6 457 80.7
MSTRG.14945 Avicennia marina HOM05D006017 ORTHO05D007821 1.3e-231 806.2 432 83.8
Rhsim04G0023700 Rhododendron simsii HOM05D006017 ORTHO05D007821 1.3e-231 806.2 437 83.8
Thhalv10013691m.g Eutrema salsugineum HOM05D006017 ORTHO05D007821 1.7e-231 805.8 459 84.5
Gorai.002G065000 Gossypium raimondii HOM05D006017 ORTHO05D007821 3.7e-231 804.7 450 82.2
Dinv14956 Davidia involucrata HOM05D006017 ORTHO05D007821 4.9e-231 804.3 432 83.8
Manes.03G103900 Manihot esculenta HOM05D006017 ORTHO05D007821 1.1e-230 803.1 438 83.1
Gohir.A01G059400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 1.4e-230 802.7 453 81.9
CiPaw.12G115700 Carya illinoinensis HOM05D006017 ORTHO05D007821 2.4e-230 802.0 442 81.9
Peaxi162Scf00000g00262 Petunia axillaris HOM05D006017 ORTHO05D007821 2.4e-230 802.0 448 81.7
Cfa019614 Carpinus fangiana HOM05D006017 ORTHO05D007821 3.2e-230 801.6 452 81.2
vmacro09508 Vaccinium macrocarpon HOM05D006017 ORTHO05D007821 4.1e-230 801.2 468 78.6
Gohir.D01G045400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 5.4e-230 800.8 450 81.8
CSS0036883 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.6e-229 799.3 431 83.5
PSO541G6385 Papaver somniferum HOM05D006017 ORTHO05D007821 1.3e-228 796.2 448 81.5
Prupe.4G172100 Prunus persica HOM05D006017 ORTHO05D007821 1.3e-228 796.2 449 79.3
Haze_09368 Corylus avellana HOM05D006017 ORTHO05D007821 1.7e-228 795.8 461 80.3
FAN16G2700 Fragaria x ananassa HOM05D006017 ORTHO05D007821 3.0e-228 795.0 436 81.4
RcHm_v2.0_Chr5g0031821 Rosa chinensis HOM05D006017 ORTHO05D007821 3.0e-228 795.0 435 81.4
Migut.M00760 Erythranthe guttata HOM05D006017 ORTHO05D007821 6.6e-228 793.9 446 80.9
FAN11G3087 Fragaria x ananassa HOM05D006017 ORTHO05D007821 6.6e-228 793.9 432 82.2
Lsat_1_v5_gn_9_98620 Lactuca sativa HOM05D006017 ORTHO05D007821 1.1e-227 793.1 450 79.8
Sc03g0010290 Simmondsia chinensis HOM05D006017 ORTHO05D007821 1.1e-227 793.1 432 82.9
Cc05_g11510 Coffea canephora HOM05D006017 ORTHO05D007821 1.5e-227 792.7 448 80.6
CsaV3_4G008430 Cucumis sativus L. HOM05D006017 ORTHO05D007821 1.5e-227 792.7 451 79.6
DCAR_028453 Daucus carota HOM05D006017 ORTHO05D007821 1.5e-227 792.7 450 79.8
MBI07_g06432_MAGBIO Magnolia biondii HOM05D006017 ORTHO05D007821 1.5e-227 792.7 432 82.2
Sed0020976 Sechium edule HOM05D006017 ORTHO05D007821 2.5e-227 792.0 457 79.4
Actinidia18784 Actinidia chinensis HOM05D006017 ORTHO05D007821 3.3e-227 791.6 432 82.9
PGR083G0123 Punica granatum HOM05D006017 ORTHO05D007821 4.3e-227 791.2 435 83.2
CANSAT35G1773 Cannabis sativa HOM05D006017 ORTHO05D007821 5.6e-227 790.8 437 82.6
Eucgr.F01184 Eucalyptus grandis HOM05D006017 ORTHO05D007821 7.3e-227 790.4 430 83.3
MELO3C016089.2 Cucumis melo HOM05D006017 ORTHO05D007821 2.8e-226 788.5 448 79.9
Lj8A152T86 Lonicera japonica HOM05D006017 ORTHO05D007821 2.8e-226 788.5 448 81.0
Eucgr.F01185 Eucalyptus grandis HOM05D006017 ORTHO05D007821 4.7e-226 787.7 430 83.0
GSVIVG01014248001 Vitis vinifera HOM05D006017 ORTHO05D007821 2.4e-225 785.4 433 82.4
EL10Ac4g08290 Beta vulgaris HOM05D006017 ORTHO05D007821 3.1e-225 785.0 444 80.6
ECA240G4517 Erigeron canadensis HOM05D006017 ORTHO05D007821 3.1e-225 785.0 449 78.8
QL08p027671 Quercus lobata HOM05D006017 ORTHO05D007821 4.0e-225 784.6 449 79.7
HanXRQChr03g0070991 Helianthus annuus HOM05D006017 ORTHO05D007821 5.2e-225 784.3 451 79.2
CiPaw.11G165400 Carya illinoinensis HOM05D006017 ORTHO05D007821 2.0e-224 782.3 431 81.4
PSO675G4947 Papaver somniferum HOM05D006017 ORTHO05D007821 2.6e-224 781.9 454 79.5
Lj3g0015312 Lotus japonicus HOM05D006017 ORTHO05D007821 3.4e-224 781.6 432 81.7
Aqoxy1G02214 Aquilegia oxysepala HOM05D006017 ORTHO05D007821 4.4e-224 781.2 447 78.7
CAN.G739.4 Capsicum annuum HOM05D006017 ORTHO05D007821 1.7e-223 779.2 473 75.7
Medtr8g463280 Medicago truncatula HOM05D006017 ORTHO05D007821 1.7e-223 779.2 432 81.2
Psat4g138640 Pisum sativum HOM05D006017 ORTHO05D007821 7.1e-222 773.9 429 82.3
ATR0749G089 Amborella trichopoda HOM05D006017 ORTHO05D007821 3.5e-221 771.5 432 80.3
Ca_23058_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 4.6e-221 771.2 432 81.2
Ca_30664_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 4.6e-221 771.2 432 81.2
Glyma.12G158600 Glycine max HOM05D006017 ORTHO05D007821 7.8e-221 770.4 432 81.5
Phvul.011G148800 Phaseolus vulgaris HOM05D006017 ORTHO05D007821 1.0e-220 770.0 432 80.8
arahy.Tifrunner.gnm1.ann1.DSNA77 Arachis hypogaea HOM05D006017 ORTHO05D007821 1.7e-220 769.2 433 79.4
Potri.001G374100 Populus trichocarpa HOM05D006017 ORTHO05D007821 1.7e-220 769.2 437 80.5
AUR62019513 Chenopodium quinoa HOM05D006017 ORTHO05D007821 2.3e-220 768.8 447 78.7
Lalb_Chr03g0030841 Lupinus albus HOM05D006017 ORTHO05D007821 2.3e-220 768.8 432 80.3
FAN21G1753 Fragaria x ananassa HOM05D006017 ORTHO05D007821 3.0e-220 768.5 465 75.5
VMungo1127G0952 Vigna mungo HOM05D006017 ORTHO05D007821 3.9e-220 768.1 432 80.3
arahy.Tifrunner.gnm1.ann1.FV2XB3 Arachis hypogaea HOM05D006017 ORTHO05D007821 1.5e-219 766.1 433 79.4
Oeu061327.1 Olea europaea HOM05D006017 ORTHO05D007821 7.3e-219 763.8 468 74.8
Oeu061328.1 Olea europaea HOM05D006017 ORTHO05D007821 7.3e-219 763.8 468 74.8
Sabra16G0246500 Salix brachista HOM05D006017 ORTHO05D007821 7.6e-216 753.8 434 79.5
Nitab4.5_0003077g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 1.3e-215 753.1 467 74.9
AUR62036125 Chenopodium quinoa HOM05D006017 ORTHO05D007821 7.1e-214 747.3 450 76.7
Os06g0103300 Oryza sativa ssp. japonica HOM05D006017 ORTHO05D007821 1.6e-213 746.1 450 77.1
unitig_46.g18314 Utricularia gibba HOM05D006017 ORTHO05D007821 1.7e-212 742.7 439 77.2
HPP92_003902 Vanilla planifolia HOM05D006017 ORTHO05D007821 4.3e-211 738.0 438 75.1
Ciclev10008509m.g Citrus clementina HOM05D006017 ORTHO05D007821 5.8e-208 727.6 384 86.7
Zm00001eb379510 Zea mays HOM05D006017 ORTHO05D007821 9.9e-208 726.9 447 75.8
SGA_v2.0_scaffold73G24213 Striga asiatica HOM05D006017 ORTHO05D007821 3.8e-207 724.9 467 73.0
CDE02G3882 Ceratophyllum demersum HOM05D006017 ORTHO05D007821 1.1e-203 713.4 433 75.3
Nn1g04303 Nelumbo nucifera HOM05D006017 ORTHO05D007821 1.1e-203 713.4 377 84.9
Ah.04g164440 Amaranthus hybridus HOM05D006017 ORTHO05D007821 9.6e-203 710.3 447 74.3
Hund22764 Selenicereus undatus HOM05D006017 ORTHO05D007821 3.7e-194 681.8 397 79.3
Mapoly0078s0002 Marchantia polymorpha HOM05D006017 ORTHO05D007821 4.1e-193 678.3 435 71.3
AagrBONN_evm.TU.Sc2ySwM_228.2578 Anthoceros agrestis HOM05D006017 ORTHO05D007821 7.2e-190 667.5 424 70.3
Pp3c16_940 Physcomitrium patens HOM05D006017 ORTHO05D007821 8.7e-188 660.6 438 68.9
Duzib170G0488 Durio zibethinus HOM05D006017 ORTHO05D007821 4.6e-181 638.3 452 68.4
Nitab4.5_0005445g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 5.5e-174 614.8 415 70.1
SMO119G0176 Selaginella moellendorffii HOM05D006017 ORTHO05D007821 5.7e-171 604.7 432 64.4
FvH4_3g19020 Fragaria vesca HOM05D006017 ORTHO05D007821 8.2e-162 574.3 321 80.4
Hma1.2p1_0416F.1_g148580 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 3.5e-160 568.9 300 85.0
Cre02.g091200 Chlamydomonas reinhardtii HOM05D006017 ORTHO05D007821 1.7e-159 566.6 443 61.6
SalBow8G4076 Salvia bowleyana HOM05D006017 ORTHO05D007821 5.7e-155 551.6 304 81.6
TPR.G22540 Trifolium pratense HOM05D006017 ORTHO05D007821 9.1e-153 544.3 376 69.7
PRCOL_00000185 Prasinoderma coloniale HOM05D006017 ORTHO05D007821 2.2e-151 539.7 456 58.3
MD03G1237500 Malus domestica HOM05D006017 ORTHO05D007821 2.8e-146 522.7 296 81.1
Glyma.06G234200 Glycine max HOM05D006017 ORTHO05D007821 2.0e-128 463.4 276 77.2
BcaC04g20394 Brassica carinata HOM05D006017 ORTHO05D007821 5.6e-94 349.0 434 50.5
CSS0003418 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.6e-77 294.3 196 72.4
C09p44170 Brassica napus HOM05D006017 ORTHO05D017343 2.8e-77 293.5 303 56.8
MD03G1237300 Malus domestica HOM05D006017 ORTHO05D007821 1.2e-72 278.1 158 77.8
FAN25G2436 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.1e-68 265.0 131 89.3
SEGI_01915 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 9.1e-68 261.9 160 74.4
Oeu061326.1 Olea europaea HOM05D006017 ORTHO05D007821 1.1e-62 245.0 132 84.1
TAR436G0001 Trochodendron aralioides HOM05D006017 ORTHO05D007821 1.7e-61 241.1 131 84.0
Rhsim07G0153900 Rhododendron simsii HOM05D006017 ORTHO05D000252 3.7e-61 240.0 236 53.0
Glyma.06G234050 Glycine max HOM05D006017 ORTHO05D007821 6.9e-60 235.7 133 80.5
Nitab4.5_0004022g0010 Nicotiana tabacum HOM05D006017 ORTHO05D007821 1.2e-56 224.9 120 85.8
A10p11370 Brassica napus HOM05D006017 ORTHO05D007821 5.0e-50 203.0 249 50.2
CSS0021316 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 8.8e-47 192.2 114 72.8
TWI38G1497 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 4.8e-45 186.4 119 72.3
BolC9t57289H Brassica oleracea HOM05D006017 ORTHO05D104628 3.8e-34 150.2 182 49.5
SEGI_25954 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 7.5e-30 136.0 101 62.4
FAN25G2983 Fragaria x ananassa HOM05D006017 ORTHO05D007821 8.0e-24 115.9 90 58.9
arahy.Tifrunner.gnm1.ann1.EZ2Q4B Arachis hypogaea HOM05D006004 ORTHO05D006976 7.5e-22 109.4 83 63.9
SEGI_23248 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 4.9e-21 106.7 85 57.6
TWI38G0821 Tripterygium wilfordii HOM05D006017 ORTHO05D413584 7.0e-20 102.8 62 72.6
CSS0031230 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 2.7e-19 100.9 105 48.6
BraA10t43231Z Brassica rapa HOM05D006017 ORTHO05D017343 2.5e-17 94.4 68 64.7
HPP92_003866 Vanilla planifolia HOM05D006017 ORTHO05D007821 2.5e-09 67.8 54 59.3
Mapoly0432s0001 Marchantia polymorpha HOM05D019566 ORTHO05D017343 2.1e-08 64.7 43 65.1


User provided reference genes

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