Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g15920 Schrenkiella parvula HOM05D006845 ORTHO05D009300 1.0e-251 872.8 423 100.0
C09p43870 Brassica napus HOM05D006845 ORTHO05D009300 7.9e-244 846.7 423 96.0
A10p11250 Brassica napus HOM05D006845 ORTHO05D009300 3.0e-243 844.7 423 95.7
BcaB08g35745 Brassica carinata HOM05D006845 ORTHO05D009300 2.0e-242 842.0 423 95.3
Thhalv10013651m.g Eutrema salsugineum HOM05D006845 ORTHO05D009300 4.4e-242 840.9 423 94.8
BcaC04g20411 Brassica carinata HOM05D006845 ORTHO05D009300 5.7e-242 840.5 423 95.5
AL8G28920 Arabidopsis lyrata HOM05D006845 ORTHO05D009300 3.1e-240 834.7 423 95.0
AT5G53860 Arabidopsis thaliana HOM05D006845 ORTHO05D009300 3.8e-238 827.8 423 93.9
Carub.0008s1415 Capsella rubella HOM05D006845 ORTHO05D009300 5.0e-238 827.4 423 93.1
CARHR266990 Cardamine hirsuta HOM05D006845 ORTHO05D009300 1.9e-237 825.5 423 93.9
BolC9t57269H Brassica oleracea HOM05D006845 ORTHO05D009300 2.4e-224 781.9 434 88.2
BraA10t43218Z Brassica rapa HOM05D006845 ORTHO05D009300 2.9e-222 775.0 468 82.9
Aa31LG3G10070 Aethionema arabicum HOM05D006845 ORTHO05D009300 4.2e-221 771.2 402 92.0
THA.LOC104811867 Tarenaya hassleriana HOM05D006845 ORTHO05D009300 2.3e-214 748.8 423 84.9
Thecc.07G091800 Theobroma cacao HOM05D006845 ORTHO05D009300 3.7e-209 731.5 423 80.4
Gohir.D08G031900 Gossypium hirsutum HOM05D006845 ORTHO05D009300 4.5e-207 724.5 423 79.2
Gohir.A08G021200 Gossypium hirsutum HOM05D006845 ORTHO05D009300 2.3e-206 722.2 423 79.0
Gorai.004G029400 Gossypium raimondii HOM05D006845 ORTHO05D009300 8.6e-206 720.3 423 78.7
PGR083G0376 Punica granatum HOM05D006845 ORTHO05D009300 2.3e-203 712.2 423 78.0
Manes.15G087900 Manihot esculenta HOM05D006845 ORTHO05D009300 1.3e-201 706.4 423 77.8
Prupe.4G179900 Prunus persica HOM05D006845 ORTHO05D009300 1.3e-201 706.4 423 77.3
Eucgr.F01150 Eucalyptus grandis HOM05D006845 ORTHO05D009300 4.9e-201 704.5 424 76.9
COL.COLO4_27185 Corchorus olitorius HOM05D006845 ORTHO05D009300 1.7e-198 696.0 423 75.9
CANSAT56G3540 Cannabis sativa HOM05D006845 ORTHO05D009300 6.6e-198 694.1 426 74.9
Ciclev10008389m.g Citrus clementina HOM05D006845 ORTHO05D009300 6.6e-198 694.1 427 75.9
GSVIVG01014313001 Vitis vinifera HOM05D006845 ORTHO05D009300 6.6e-198 694.1 424 75.0
RcHm_v2.0_Chr5g0033181 Rosa chinensis HOM05D006845 ORTHO05D009300 1.9e-197 692.6 417 75.8
Potri.001G398900 Populus trichocarpa HOM05D006845 ORTHO05D009300 3.3e-197 691.8 411 77.4
Nn1g06500 Nelumbo nucifera HOM05D006845 ORTHO05D009300 5.6e-197 691.0 423 74.2
CSS0022560 Camellia sinensis var. sinensis HOM05D006845 ORTHO05D009300 9.5e-197 690.3 425 73.6
MD11G1250000 Malus domestica HOM05D006845 ORTHO05D009300 1.2e-196 689.9 420 75.0
Potri.011G118000 Populus trichocarpa HOM05D006845 ORTHO05D009300 1.2e-196 689.9 421 75.5
FvH4_3g19780 Fragaria vesca HOM05D006845 ORTHO05D009300 6.2e-196 687.6 417 75.8
Solyc12g013890.2 Solanum lycopersicum HOM05D006845 ORTHO05D009300 1.1e-195 686.8 425 73.6
Sopen12g007210 Solanum pennellii HOM05D006845 ORTHO05D009300 1.4e-195 686.4 425 73.4
ClCG11G018010 Citrullus lanatus HOM05D006845 ORTHO05D009300 2.3e-195 685.6 412 75.7
QL08p022228 Quercus lobata HOM05D006845 ORTHO05D009300 3.1e-195 685.3 422 74.2
Atru.chr2.2481 Acer truncatum HOM05D006845 ORTHO05D009300 1.2e-194 683.3 412 77.2
Dinv14926 Davidia involucrata HOM05D006845 ORTHO05D009300 1.2e-194 683.3 420 75.0
Sed0008037 Sechium edule HOM05D006845 ORTHO05D009300 4.4e-194 681.4 423 74.2
CiPaw.11G170600 Carya illinoinensis HOM05D006845 ORTHO05D009300 1.3e-193 679.9 423 74.2
TAR627G0110 Trochodendron aralioides HOM05D006845 ORTHO05D009300 2.2e-193 679.1 424 72.2
CsaV3_4G033630 Cucumis sativus L. HOM05D006845 ORTHO05D009300 6.4e-193 677.6 423 73.3
PSO541G3085 Papaver somniferum HOM05D006845 ORTHO05D009300 3.2e-192 675.2 424 72.4
PSO675G5588 Papaver somniferum HOM05D006845 ORTHO05D009300 3.2e-192 675.2 424 72.2
Lalb_Chr25g0286311 Lupinus albus HOM05D006845 ORTHO05D009300 4.1e-192 674.9 416 76.0
CAN.G213.11 Capsicum annuum HOM05D006845 ORTHO05D009300 1.2e-191 673.3 414 74.2
Hma1.2p1_0898F.1_g234490 Hydrangea macrophylla HOM05D006845 ORTHO05D009300 1.6e-191 672.9 412 74.3
Cfa020572 Carpinus fangiana HOM05D006845 ORTHO05D009300 3.5e-191 671.8 417 75.5
arahy.Tifrunner.gnm1.ann1.61G52X Arachis hypogaea HOM05D006845 ORTHO05D009300 4.6e-191 671.4 417 74.1
MELO3C016692.2 Cucumis melo HOM05D006845 ORTHO05D009300 1.0e-190 670.2 417 72.7
TWI39G1089 Tripterygium wilfordii HOM05D006845 ORTHO05D009300 1.3e-190 669.8 423 73.3
MD03G1229200 Malus domestica HOM05D006845 ORTHO05D009300 2.3e-190 669.1 421 74.8
Migut.H01945 Erythranthe guttata HOM05D006845 ORTHO05D009300 3.9e-190 668.3 425 71.5
Glyma.12G225400 Glycine max HOM05D006845 ORTHO05D009300 8.6e-190 667.2 424 73.6
Lj3g0006633 Lotus japonicus HOM05D006845 ORTHO05D009300 1.1e-189 666.8 417 74.8
arahy.Tifrunner.gnm1.ann1.ME6152 Arachis hypogaea HOM05D006845 ORTHO05D009300 2.5e-189 665.6 417 73.4
MSTRG.14352 Avicennia marina HOM05D006845 ORTHO05D009300 2.5e-189 665.6 425 71.8
Oeu051072.2 Olea europaea HOM05D006845 ORTHO05D009300 3.6e-188 661.8 450 69.8
FAN11G1119 Fragaria x ananassa HOM05D006845 ORTHO05D009300 8.1e-188 660.6 411 74.7
Glyma.13G275900 Glycine max HOM05D006845 ORTHO05D009300 8.1e-188 660.6 424 73.1
AUR62039192 Chenopodium quinoa HOM05D006845 ORTHO05D009300 3.1e-187 658.7 424 70.5
Aqoxy1G02380 Aquilegia oxysepala HOM05D006845 ORTHO05D009300 1.5e-186 656.4 403 74.4
FAN21G2917 Fragaria x ananassa HOM05D006845 ORTHO05D009300 7.5e-186 654.1 426 71.8
Duzib213G0603 Durio zibethinus HOM05D006845 ORTHO05D009300 6.4e-185 651.0 423 72.8
HanXRQChr12g0364151 Helianthus annuus HOM05D006845 ORTHO05D009300 1.4e-184 649.8 424 68.9
EL10Ac4g08199 Beta vulgaris HOM05D006845 ORTHO05D009300 3.2e-184 648.7 423 69.3
AUR62019438 Chenopodium quinoa HOM05D006845 ORTHO05D009300 7.8e-183 644.0 412 70.4
VMungo1080G1688 Vigna mungo HOM05D006845 ORTHO05D009300 1.7e-182 642.9 424 72.2
DCAR_017135 Daucus carota HOM05D006845 ORTHO05D009300 3.3e-181 638.6 407 70.8
Nitab4.5_0003378g0090 Nicotiana tabacum HOM05D006845 ORTHO05D009300 4.3e-181 638.3 425 70.1
Phvul.005G073100 Phaseolus vulgaris HOM05D006845 ORTHO05D009300 9.5e-181 637.1 418 72.0
FAN25G1923 Fragaria x ananassa HOM05D006845 ORTHO05D009300 3.6e-180 635.2 417 71.0
Actinidia18770 Actinidia chinensis HOM05D006845 ORTHO05D009300 2.6e-178 629.0 387 72.4
Peaxi162Scf00000g00345 Petunia axillaris HOM05D006845 ORTHO05D009300 9.9e-178 627.1 425 69.2
CDE02G1035 Ceratophyllum demersum HOM05D006845 ORTHO05D009300 6.4e-177 624.4 423 67.4
Sabra16G0261500 Salix brachista HOM05D006845 ORTHO05D009300 1.1e-176 623.6 540 58.3
Lsat_1_v5_gn_9_97520 Lactuca sativa HOM05D006845 ORTHO05D009300 4.1e-176 621.7 418 67.9
ATR0737G060 Amborella trichopoda HOM05D006845 ORTHO05D009300 6.0e-175 617.8 422 66.8
FAN16G0640 Fragaria x ananassa HOM05D006845 ORTHO05D009300 9.6e-173 610.5 411 70.3
SGA_v2.0_scaffold70G23678 Striga asiatica HOM05D006845 ORTHO05D009300 2.2e-169 599.4 409 68.5
Ca_03508_v3 Cicer arietinum L. HOM05D006845 ORTHO05D009300 1.9e-168 596.3 419 67.8
Nitab4.5_0000332g0060 Nicotiana tabacum HOM05D006845 ORTHO05D009300 4.3e-165 585.1 457 62.4
Ah.06g184430 Amaranthus hybridus HOM05D006845 ORTHO05D009300 3.6e-164 582.0 414 66.4
HPP92_003615 Vanilla planifolia HOM05D006845 ORTHO05D009300 7.6e-162 574.3 422 62.3
Medtr2g079060 Medicago truncatula HOM05D006845 ORTHO05D009300 2.8e-156 555.8 413 65.6
Psat5g242160 Pisum sativum HOM05D006845 ORTHO05D009300 1.2e-154 550.4 401 65.3
Actinidia35244 Actinidia chinensis HOM05D006845 ORTHO05D009300 1.8e-150 536.6 414 60.9
TPR.G7949 Trifolium pratense HOM05D006845 ORTHO05D009300 1.1e-149 533.9 364 69.0
Lj1C841T8 Lonicera japonica HOM05D006845 ORTHO05D009300 4.9e-145 518.5 371 65.8
Sc16g0007040 Simmondsia chinensis HOM05D006845 ORTHO05D009300 7.9e-143 511.1 312 75.0
Haze_09439 Corylus avellana HOM05D006845 ORTHO05D009300 7.4e-141 504.6 380 64.7
Cpa.g.sc80.77 Carica papaya HOM05D006845 ORTHO05D009300 3.1e-139 499.2 423 59.8
ECA240G2176 Erigeron canadensis HOM05D006845 ORTHO05D009300 2.6e-138 496.1 313 71.2
BcaB07g33336 Brassica carinata HOM05D006845 ORTHO05D009300 4.7e-111 405.6 204 93.6
Cc05_g11930 Coffea canephora HOM05D006845 ORTHO05D009300 4.4e-93 345.9 214 71.5
SEGI_13558 Sequoiadendron giganteum HOM05D006845 ORTHO05D009300 1.7e-89 334.0 346 43.4
Pp3c1_32740 Physcomitrium patens HOM05D006845 ORTHO05D009300 3.4e-85 319.7 345 44.6
Cc05_g11920 Coffea canephora HOM05D006845 ORTHO05D009300 1.4e-83 314.3 204 72.1
AagrBONN_evm.TU.Sc2ySwM_344.572 Anthoceros agrestis HOM05D006845 ORTHO05D009300 2.3e-81 307.0 394 39.6
Mapoly0037s0133 Marchantia polymorpha HOM05D006845 ORTHO05D009300 2.3e-73 280.4 347 38.3
SMO143G0137 Selaginella moellendorffii HOM05D006845 ORTHO05D009300 4.4e-61 239.6 280 41.1
unitig_899.g15568 Utricularia gibba HOM05D006845 ORTHO05D009300 3.5e-42 176.8 106 73.6
BcaB04g16942 Brassica carinata HOM05D006845 ORTHO05D009300 1.6e-39 167.9 140 66.4
Lsat_1_v5_gn_7_87221 Lactuca sativa HOM05D003066 ORTHO05D004162 2.0e-37 161.0 103 67.0
Sabra11G0103000 Salix brachista HOM05D006845 ORTHO05D009300 3.4e-37 160.2 85 84.7
Lsat_1_v5_gn_4_31781 Lactuca sativa HOM05D006845 ORTHO05D014206 1.9e-35 154.5 106 64.2
Lsat_1_v5_gn_5_134240 Lactuca sativa HOM05D006845 ORTHO05D014206 1.9e-35 154.5 106 64.2
Lsat_1_v5_gn_7_62660 Lactuca sativa HOM05D006845 ORTHO05D014206 7.1e-35 152.5 103 64.1
FAN12G2298 Fragaria x ananassa HOM05D006845 ORTHO05D014206 8.5e-12 75.9 49 67.3
FAN25G3098 Fragaria x ananassa HOM05D006845 ORTHO05D014206 5.5e-11 73.2 49 65.3
FAN05G4902 Fragaria x ananassa HOM05D006845 ORTHO05D014206 7.2e-11 72.8 50 64.0
MBI02_g32976_MAGBIO Magnolia biondii HOM05D000872 ORTHO05D014206 2.3e-09 67.8 47 63.8
FAN09G2373 Fragaria x ananassa HOM05D006845 ORTHO05D014206 4.4e-08 63.5 48 58.3
Hma1.2p1_0554F.1_g177810 Hydrangea macrophylla HOM05D006845 ORTHO05D014206 7.4e-08 62.8 45 62.2


User provided reference genes

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