Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 0.0e+00 1801.2 1141 100.0
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 0.0e+00 1316.6 1187 75.7
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 0.0e+00 1301.6 1195 72.9
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 0.0e+00 1284.2 1203 73.7
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 0.0e+00 1258.0 1177 73.7
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 0.0e+00 1134.4 1157 69.4
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 0.0e+00 1116.3 1192 68.3
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 0.0e+00 1107.4 1159 67.6
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 0.0e+00 1100.5 1156 69.5
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 0.0e+00 1092.0 1157 69.5
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 0.0e+00 1081.2 1163 67.6
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 1.7e-309 1066.2 1179 65.8
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 5.5e-223 778.9 1039 62.1
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 1.0e-208 731.5 993 57.4
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 9.2e-170 602.1 962 50.5
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 1.1e-157 562.0 1042 46.9
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 4.3e-151 540.0 1247 48.2
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 1.4e-133 481.9 1263 44.3
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 4.0e-133 480.3 1235 41.4
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 2.0e-132 478.0 1220 38.0
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 2.0e-132 478.0 1249 44.8
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 2.6e-132 477.6 1249 46.0
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 1.8e-128 464.9 1299 43.8
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 5.6e-127 459.9 1246 43.5
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 1.3e-126 458.8 1263 45.1
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 2.2e-123 448.0 1258 41.9
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 2.9e-123 447.6 1238 43.8
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 6.0e-121 439.9 1265 41.8
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 1.3e-120 438.7 755 39.7
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 2.5e-119 434.5 1258 43.4
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 9.6e-119 432.6 1262 43.9
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 1.4e-117 428.7 1294 44.3
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.4e-117 428.7 1269 41.1
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 9.0e-117 426.0 1213 43.2
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.0e-115 422.5 1245 39.1
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 1.7e-115 421.8 719 41.6
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 6.5e-115 419.9 1246 40.6
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 1.4e-114 418.7 1313 41.3
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 1.8e-112 411.8 1250 37.6
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 9.7e-111 406.0 1203 39.6
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 1.6e-110 405.2 777 40.4
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 2.0e-108 398.3 1222 41.2
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 1.0e-107 396.0 1191 36.4
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 3.2e-106 391.0 1215 42.1
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 4.2e-106 390.6 1268 42.0
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 6.1e-105 386.7 1216 41.2
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.5e-103 382.1 1216 40.8
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 3.3e-103 380.9 1279 42.1
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 2.2e-102 378.3 1272 42.6
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 8.2e-102 376.3 1270 41.1
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.8e-101 375.2 1287 41.8
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 9.1e-101 372.9 1275 36.6
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 5.9e-100 370.2 1287 41.6
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 3.8e-99 367.5 1061 44.9
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 6.5e-99 366.7 1208 39.6
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.2e-97 362.5 1281 40.4
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 1.2e-97 362.5 1221 38.3
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 6.1e-97 360.1 1284 38.8
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 7.9e-97 359.8 1256 35.4
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.1e-90 339.3 1276 39.4
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 9.4e-90 336.3 1242 36.9
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 2.1e-89 335.1 1214 38.4
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 2.7e-89 334.7 1244 36.3
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 1.8e-88 332.0 491 44.4
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 2.3e-88 331.6 1310 39.2
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 3.0e-88 331.3 1215 37.9
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 8.8e-88 329.7 1265 40.5
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 7.7e-84 316.6 1254 36.5
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 1.7e-83 315.5 1223 35.4
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 2.5e-82 311.6 1158 38.6
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 5.5e-82 310.5 1252 35.0
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 2.7e-81 308.1 1279 34.9
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 6.1e-81 307.0 1299 31.8
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 8.8e-80 303.1 1293 35.2
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.6e-79 301.6 559 38.3
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 3.3e-79 301.2 1220 36.0
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 1.4e-77 295.8 1248 37.2
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.8e-77 295.4 1065 33.2
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 2.5e-74 285.0 734 36.5
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 4.2e-74 284.3 1212 33.6
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 4.2e-74 284.3 1225 36.2
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 2.1e-73 282.0 713 33.9
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 8.0e-73 280.0 457 42.0
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 1.0e-72 279.6 802 32.8
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 1.5e-71 275.8 1226 31.8
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 2.0e-71 275.4 1244 35.0
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 2.0e-71 275.4 1186 32.2
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 1.4e-69 269.2 1090 34.9
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 9.1e-69 266.5 730 33.7
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 8.6e-67 260.0 1020 37.4
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 1.1e-66 259.6 1251 36.9
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 3.3e-66 258.1 1195 33.6
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 5.5e-66 257.3 496 38.3
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 2.8e-65 255.0 1143 35.3
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 6.1e-65 253.8 620 35.6
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 6.1e-65 253.8 620 35.6
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 8.0e-65 253.4 1214 34.8
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 5.7e-63 247.3 495 38.6
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 7.5e-63 246.9 800 31.1
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 6.3e-62 243.8 704 34.2
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 1.4e-61 242.7 540 35.9
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 4.1e-61 241.1 1347 29.5
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 5.4e-61 240.7 501 36.3
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 9.2e-61 240.0 563 34.3
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.3e-59 236.1 649 33.1
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 1.7e-59 235.7 716 33.0
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 3.8e-59 234.6 722 32.5
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 1.5e-58 232.6 667 32.5
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 5.6e-58 230.7 564 33.9
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 5.6e-58 230.7 1050 37.8
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 6.1e-57 227.3 750 31.3
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 2.3e-56 225.3 619 33.9
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 4.0e-56 224.6 686 32.7
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 8.9e-56 223.4 601 33.1
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.3e-54 219.5 1035 32.0
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.7e-54 219.2 1395 33.7
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 1.1e-53 216.5 444 37.8
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 1.8e-53 215.7 818 30.6
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 8.6e-51 206.8 479 36.5
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 1.5e-50 206.1 1280 36.4
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 1.6e-49 202.6 1301 34.4
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 2.8e-49 201.8 1336 32.0
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 4.7e-49 201.1 759 29.5
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 5.2e-48 197.6 1044 28.5
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.5e-47 196.1 1120 35.0
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 2.0e-47 195.7 810 27.4
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 3.2e-45 188.3 1044 28.9
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 3.9e-43 181.4 1206 33.3
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 5.6e-42 177.6 480 32.9
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 3.6e-41 174.9 1106 36.5
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 8.1e-41 173.7 1382 32.0
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 5.2e-40 171.0 349 37.5
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 1.2e-39 169.9 559 31.5
C06p30100 Brassica napus HOM05D003962 ORTHO05D032564 2.6e-39 168.7 154 69.5
BolC6t38171H Brassica oleracea HOM05D003962 ORTHO05D032564 2.6e-39 168.7 154 69.5
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 2.4e-37 162.2 1255 27.9
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 4.1e-37 161.4 829 26.3
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 1.3e-35 156.4 441 32.9
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 2.5e-34 152.1 512 31.1
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 6.2e-33 147.5 498 30.1
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 8.1e-33 147.1 1246 25.6
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.1e-32 146.7 319 34.8
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 2.2e-30 139.0 518 28.4
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 1.9e-29 136.0 824 27.1
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 1.7e-27 129.4 1109 32.6
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.9e-26 125.9 513 28.8
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 2.5e-26 125.6 696 26.3
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 4.0e-24 118.2 487 29.2
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 9.0e-24 117.1 626 26.8
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.5e-23 116.3 657 26.3
BcaC08g45378 Brassica carinata HOM05D003962 ORTHO05D032564 1.7e-22 112.8 102 70.6
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.2e-22 112.5 505 28.1
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 1.1e-21 110.2 293 32.4
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 2.4e-21 109.0 401 29.2
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 1.4e-16 93.2 1111 31.1
SHI02387 Sapria himalayana HOM05D003962 ORTHO05D004714 3.4e-15 88.6 122 55.7
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 1.7e-14 86.3 1173 29.6
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 4.9e-14 84.7 434 28.8
A03p24330 Brassica napus HOM05D003962 ORTHO05D004714 1.9e-10 72.8 69 65.2
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 3.3e-10 72.0 452 25.0
TAR629G3239 Trochodendron aralioides HOM05D003962 ORTHO05D004714 5.6e-10 71.2 131 42.7
TAR375G1118 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.0e-07 62.8 268 33.2
BcaB03g16273 Brassica carinata HOM05D000238 ORTHO05D011431 3.4e-07 62.0 85 63.5


User provided reference genes

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