Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g15460 Schrenkiella parvula HOM05D004948 ORTHO05D005824 2.7e-115 418.7 214 100.0
AL8G28010 Arabidopsis lyrata HOM05D004948 ORTHO05D005824 5.6e-105 384.4 214 93.0
Carub.0008s1349 Capsella rubella HOM05D004948 ORTHO05D005824 6.9e-103 377.5 214 91.6
AT5G53310 Arabidopsis thaliana HOM05D004948 ORTHO05D005824 1.4e-100 369.8 214 90.2
BcaC03g14431 Brassica carinata HOM05D004948 ORTHO05D005824 5.5e-100 367.9 214 89.3
C02p18470 Brassica napus HOM05D004948 ORTHO05D005824 5.5e-100 367.9 214 89.3
BolC2t07987H Brassica oleracea HOM05D004948 ORTHO05D005824 5.5e-100 367.9 214 89.3
BcaB05g22031 Brassica carinata HOM05D004948 ORTHO05D005824 2.1e-99 365.9 215 89.8
Thhalv10014692m.g Eutrema salsugineum HOM05D004948 ORTHO05D005824 3.5e-99 365.2 205 93.7
A02p11140 Brassica napus HOM05D004948 ORTHO05D005824 8.7e-98 360.5 214 87.4
BraA02t06177Z Brassica rapa HOM05D004948 ORTHO05D005824 8.7e-98 360.5 214 87.4
CARHR266350 Cardamine hirsuta HOM05D004948 ORTHO05D005824 2.5e-97 359.0 214 87.9
Aa31LG3G9220 Aethionema arabicum HOM05D004948 ORTHO05D005824 4.6e-91 338.2 215 82.3
Aa31LG5G23580 Aethionema arabicum HOM05D004948 ORTHO05D005824 3.2e-76 288.9 200 77.0
Aa31sc29G60 Aethionema arabicum HOM05D004948 ORTHO05D005824 5.5e-76 288.1 200 76.5
THA.LOC104800283 Tarenaya hassleriana HOM05D004948 ORTHO05D005824 6.1e-75 284.6 213 71.8
Eucgr.A02670 Eucalyptus grandis HOM05D004948 ORTHO05D005824 9.1e-71 270.8 235 61.7
SGA_v2.0_scaffold10G05268 Striga asiatica HOM05D004948 ORTHO05D005824 9.1e-71 270.8 220 65.9
Thecc.03G191700 Theobroma cacao HOM05D004948 ORTHO05D005824 1.3e-69 266.9 225 64.9
Cpa.g.sc3.41 Carica papaya HOM05D004948 ORTHO05D005824 2.2e-69 266.2 226 64.6
PGR083G1298 Punica granatum HOM05D004948 ORTHO05D005824 1.1e-68 263.8 224 64.7
Actinidia34187 Actinidia chinensis HOM05D004948 ORTHO05D005824 1.5e-68 263.5 220 63.2
COL.COLO4_04803 Corchorus olitorius HOM05D004948 ORTHO05D005824 1.5e-68 263.5 227 62.1
SalBow2G2244 Salvia bowleyana HOM05D004948 ORTHO05D005824 1.5e-68 263.5 225 63.6
BolC9t57186H Brassica oleracea HOM05D004948 ORTHO05D005824 2.5e-68 262.7 219 68.9
Hma1.2p1_0142F.1_g064080 Hydrangea macrophylla HOM05D004948 ORTHO05D005824 2.5e-68 262.7 217 65.4
Duzib205G0398 Durio zibethinus HOM05D004948 ORTHO05D005824 4.2e-68 261.9 224 63.8
MSTRG.65 Avicennia marina HOM05D004948 ORTHO05D005824 9.4e-68 260.8 217 63.6
Duzib068G0205 Durio zibethinus HOM05D004948 ORTHO05D005824 1.2e-67 260.4 225 62.2
CiPaw.06G006800 Carya illinoinensis HOM05D004948 ORTHO05D005824 2.1e-67 259.6 214 62.1
Migut.F01058 Erythranthe guttata HOM05D004948 ORTHO05D005824 2.1e-67 259.6 232 60.8
PGR042G1790 Punica granatum HOM05D004948 ORTHO05D005824 1.8e-66 256.5 175 74.9
Dinv28347 Davidia involucrata HOM05D004948 ORTHO05D005824 4.0e-66 255.4 227 61.2
BcaC04g20470 Brassica carinata HOM05D004948 ORTHO05D005824 1.1e-65 253.8 219 67.1
Prupe.2G306200 Prunus persica HOM05D004948 ORTHO05D005824 1.1e-65 253.8 233 59.7
Gohir.A12G252400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 2.6e-65 252.7 175 70.9
Ciclev10005800m.g Citrus clementina HOM05D004948 ORTHO05D005824 3.3e-65 252.3 228 62.3
Peaxi162Scf00904g00460 Petunia axillaris HOM05D004948 ORTHO05D005824 3.3e-65 252.3 193 68.4
TAR629G2953 Trochodendron aralioides HOM05D004948 ORTHO05D005824 9.7e-65 250.8 231 58.4
Dinv35301 Davidia involucrata HOM05D004948 ORTHO05D005824 1.3e-64 250.4 175 72.0
MBI07_g20438_MAGBIO Magnolia biondii HOM05D004948 ORTHO05D005824 1.3e-64 250.4 216 62.5
Atru.chr1.284 Acer truncatum HOM05D004948 ORTHO05D005824 1.7e-64 250.0 208 65.9
CAN.G108.18 Capsicum annuum HOM05D004948 ORTHO05D005824 2.2e-64 249.6 175 69.7
Peaxi162Scf00618g00525 Petunia axillaris HOM05D004948 ORTHO05D005824 4.8e-64 248.4 208 63.0
Solyc06g051820.4 Solanum lycopersicum HOM05D004948 ORTHO05D005824 4.8e-64 248.4 170 71.2
Oeu037114.1 Olea europaea HOM05D004948 ORTHO05D005824 6.3e-64 248.1 217 62.7
FAN10G0469 Fragaria x ananassa HOM05D004948 ORTHO05D005824 8.2e-64 247.7 219 62.1
Potri.012G033100 Populus trichocarpa HOM05D004948 ORTHO05D005824 8.2e-64 247.7 216 63.0
QL09p011186 Quercus lobata HOM05D004948 ORTHO05D005824 1.1e-63 247.3 218 61.5
FAN10G0476 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.4e-63 246.9 219 63.0
RcHm_v2.0_Chr1g0379991 Rosa chinensis HOM05D004948 ORTHO05D005824 1.4e-63 246.9 171 73.1
Cfa016354 Carpinus fangiana HOM05D004948 ORTHO05D005824 1.8e-63 246.5 218 60.6
FAN01G0333 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.8e-63 246.5 219 62.6
TAR636G2931 Trochodendron aralioides HOM05D004948 ORTHO05D005824 1.8e-63 246.5 227 59.9
FAN06G2108 Fragaria x ananassa HOM05D004948 ORTHO05D005824 3.1e-63 245.7 219 62.6
GSVIVG01028728001 Vitis vinifera HOM05D004948 ORTHO05D005824 3.1e-63 245.7 225 59.6
C09p43150 Brassica napus HOM05D004948 ORTHO05D005824 4.1e-63 245.4 209 67.9
CANSAT21G0873 Cannabis sativa HOM05D004948 ORTHO05D005824 4.1e-63 245.4 223 58.3
MD07G1283800 Malus domestica HOM05D004948 ORTHO05D005824 4.1e-63 245.4 227 61.2
Sed0002242 Sechium edule HOM05D004948 ORTHO05D005824 4.1e-63 245.4 170 68.2
PGSC0003DMG400009097 Solanum tuberosum HOM05D004948 ORTHO05D005824 4.1e-63 245.4 208 63.5
Gorai.008G271400 Gossypium raimondii HOM05D004948 ORTHO05D005824 7.0e-63 244.6 209 62.7
Solyc03g007480.3 Solanum lycopersicum HOM05D004948 ORTHO05D005824 7.0e-63 244.6 208 62.5
arahy.Tifrunner.gnm1.ann1.LZU7FF Arachis hypogaea HOM05D004948 ORTHO05D005824 1.6e-62 243.4 175 67.4
MD01G1214200 Malus domestica HOM05D004948 ORTHO05D005824 1.6e-62 243.4 225 59.6
Gohir.D12G253100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 2.0e-62 243.0 209 62.2
PGSC0003DMG400028892 Solanum tuberosum HOM05D004948 ORTHO05D005824 3.5e-62 242.3 212 60.8
FAN06G4897 Fragaria x ananassa HOM05D004948 ORTHO05D005824 4.5e-62 241.9 219 62.6
Sopen03g003430 Solanum pennellii HOM05D004948 ORTHO05D005824 5.9e-62 241.5 203 62.6
ClCG01G000640 Citrullus lanatus HOM05D004948 ORTHO05D005824 7.7e-62 241.1 208 61.1
Manes.06G156200 Manihot esculenta HOM05D004948 ORTHO05D005824 1.0e-61 240.7 221 58.8
FvH4_7g30910 Fragaria vesca HOM05D004948 ORTHO05D005824 1.3e-61 240.4 227 60.4
Rhsim03G0197700 Rhododendron simsii HOM05D004948 ORTHO05D005824 1.3e-61 240.4 220 59.5
vmacro06582 Vaccinium macrocarpon HOM05D004948 ORTHO05D005824 1.7e-61 240.0 233 56.7
CsaV3_5G000730 Cucumis sativus L. HOM05D004948 ORTHO05D005824 6.5e-61 238.0 212 59.9
Sopen06g017830 Solanum pennellii HOM05D004948 ORTHO05D005824 6.5e-61 238.0 213 61.0
MELO3C005865.2 Cucumis melo HOM05D004948 ORTHO05D005824 8.5e-61 237.7 208 60.1
Potri.015G023400 Populus trichocarpa HOM05D004948 ORTHO05D005824 8.5e-61 237.7 211 61.6
Lj1g0018821 Lotus japonicus HOM05D004948 ORTHO05D005824 1.1e-60 237.3 229 57.2
Sc19g0001090 Simmondsia chinensis HOM05D004948 ORTHO05D005824 1.1e-60 237.3 220 59.5
Haze_00103 Corylus avellana HOM05D004948 ORTHO05D005824 2.5e-60 236.1 235 56.2
HanXRQChr13g0392981 Helianthus annuus HOM05D004948 ORTHO05D005824 2.5e-60 236.1 212 60.4
AUR62021051 Chenopodium quinoa HOM05D004948 ORTHO05D005824 9.4e-60 234.2 201 59.7
EL10Ac3g05356 Beta vulgaris HOM05D004948 ORTHO05D005824 1.6e-59 233.4 216 57.4
AUR62031482 Chenopodium quinoa HOM05D004948 ORTHO05D005824 1.6e-59 233.4 201 58.2
Aqoxy5G04108 Aquilegia oxysepala HOM05D004948 ORTHO05D005824 4.7e-59 231.9 211 58.8
DCAR_010636 Daucus carota HOM05D004948 ORTHO05D005824 8.0e-59 231.1 175 64.6
ECA233G3864 Erigeron canadensis HOM05D004948 ORTHO05D005824 5.2e-58 228.4 196 61.7
Lalb_Chr04g0263671 Lupinus albus HOM05D004948 ORTHO05D005824 5.2e-58 228.4 175 62.3
Glyma.13G040600 Glycine max HOM05D004948 ORTHO05D005824 2.6e-57 226.1 200 60.0
TWI23G0483 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 4.4e-57 225.3 171 62.6
Lsat_1_v5_gn_8_6120 Lactuca sativa HOM05D004948 ORTHO05D005824 1.3e-56 223.8 212 57.5
ATR1132G055 Amborella trichopoda HOM05D004948 ORTHO05D005824 8.3e-56 221.1 174 59.2
FAN03G1348 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.4e-55 220.3 219 58.9
Duzib084G1367 Durio zibethinus HOM05D004948 ORTHO05D005824 2.4e-55 219.5 223 56.5
Os01g0621700 Oryza sativa ssp. japonica HOM05D004948 ORTHO05D005824 9.1e-55 217.6 217 52.5
Manes.14G019200 Manihot esculenta HOM05D004948 ORTHO05D005824 1.2e-54 217.2 205 56.6
Cc02_g01980 Coffea canephora HOM05D004948 ORTHO05D005824 2.0e-54 216.5 218 56.9
Lj1g0003063 Lotus japonicus HOM05D004948 ORTHO05D005824 2.0e-54 216.5 206 57.3
Sabra12G0022300 Salix brachista HOM05D004948 ORTHO05D005824 1.0e-53 214.2 186 62.9
Gohir.A09G183400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.3e-53 213.8 213 53.5
Gohir.D09G178100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.7e-53 213.4 213 53.5
Gorai.006G200200 Gossypium raimondii HOM05D004948 ORTHO05D005824 1.7e-53 213.4 213 53.5
TPR.G33862 Trifolium pratense HOM05D004948 ORTHO05D005824 3.8e-53 212.2 155 65.2
Actinidia31860 Actinidia chinensis HOM05D004948 ORTHO05D005824 6.5e-53 211.5 214 54.2
Hund27721 Selenicereus undatus HOM05D004948 ORTHO05D005824 8.5e-53 211.1 207 57.0
Hund27734 Selenicereus undatus HOM05D004948 ORTHO05D005824 8.5e-53 211.1 207 57.0
CAN.G204.5 Capsicum annuum HOM05D004948 ORTHO05D005824 1.5e-52 210.3 205 56.6
Nitab4.5_0001331g0180 Nicotiana tabacum HOM05D004948 ORTHO05D005824 2.5e-52 209.5 191 60.2
Nitab4.5_0000472g0200 Nicotiana tabacum HOM05D004948 ORTHO05D005824 7.2e-52 208.0 191 60.2
HPP92_024433 Vanilla planifolia HOM05D004948 ORTHO05D005824 7.2e-52 208.0 152 64.5
Ca_16670_v3 Cicer arietinum L. HOM05D004948 ORTHO05D005824 1.6e-51 206.8 195 56.4
Psat0s97g0080 Pisum sativum HOM05D004948 ORTHO05D005824 2.1e-51 206.5 155 64.5
arahy.Tifrunner.gnm1.ann1.MD6354 Arachis hypogaea HOM05D004948 ORTHO05D005824 2.7e-51 206.1 145 69.0
CDE04G0161 Ceratophyllum demersum HOM05D004948 ORTHO05D005824 2.7e-51 206.1 175 55.4
Nn2g13651 Nelumbo nucifera HOM05D004948 ORTHO05D005824 2.7e-51 206.1 187 59.4
arahy.Tifrunner.gnm1.ann1.NIM4HJ Arachis hypogaea HOM05D004948 ORTHO05D005824 8.0e-51 204.5 156 63.5
Glyma.04G238900 Glycine max HOM05D004948 ORTHO05D005824 1.8e-50 203.4 155 66.5
Lalb_Chr08g0240671 Lupinus albus HOM05D004948 ORTHO05D005824 2.3e-50 203.0 157 63.7
DCAR_014528 Daucus carota HOM05D000121 ORTHO05D005824 2.6e-49 199.5 159 59.1
Phvul.009G135700 Phaseolus vulgaris HOM05D004948 ORTHO05D005824 5.7e-49 198.4 155 63.9
unitig_747.g21853 Utricularia gibba HOM05D004948 ORTHO05D005824 7.5e-49 198.0 156 62.8
Medtr3g090670 Medicago truncatula HOM05D004948 ORTHO05D005824 1.3e-48 197.2 145 64.1
Glyma.06G124800 Glycine max HOM05D004948 ORTHO05D005824 2.2e-48 196.4 155 63.9
arahy.Tifrunner.gnm1.ann1.AMC2P5 Arachis hypogaea HOM05D004948 ORTHO05D005824 6.3e-48 194.9 166 59.0
Lj3A912T42 Lonicera japonica HOM05D004948 ORTHO05D005824 6.3e-48 194.9 198 54.0
VMungo1309G3087 Vigna mungo HOM05D004948 ORTHO05D005824 8.3e-48 194.5 168 57.7
Zm00001eb432120 Zea mays HOM05D004948 ORTHO05D005824 1.1e-47 194.1 142 66.2
Nitab4.5_0002176g0030 Nicotiana tabacum HOM05D004948 ORTHO05D005824 4.1e-47 192.2 128 72.7
DCAR_008996 Daucus carota HOM05D002473 ORTHO05D005824 7.0e-47 191.4 153 60.1
TWI39G0355 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 1.6e-46 190.3 137 66.4
Ah.07g206090 Amaranthus hybridus HOM05D004948 ORTHO05D005824 2.9e-45 186.0 132 67.4
Actinidia08617 Actinidia chinensis HOM05D004948 ORTHO05D005824 1.2e-43 180.6 144 65.3
BcaB08g35692 Brassica carinata HOM05D004948 ORTHO05D005824 8.9e-42 174.5 94 92.6
CSS0002011 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 2.0e-41 173.3 118 72.0
SHI54648 Sapria himalayana HOM05D004948 ORTHO05D005824 4.6e-38 162.2 194 49.0
SHI54754 Sapria himalayana HOM05D004948 ORTHO05D005824 4.6e-38 162.2 194 49.0
Mapoly0143s0028 Marchantia polymorpha HOM05D004948 ORTHO05D005824 5.9e-38 161.8 205 42.4
AagrBONN_evm.TU.Sc2ySwM_362.1882 Anthoceros agrestis HOM05D004948 ORTHO05D005824 2.3e-37 159.8 198 42.4
SMO361G0401 Selaginella moellendorffii HOM05D004948 ORTHO05D005824 3.9e-37 159.1 165 46.1
CSS0025713 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 6.6e-37 158.3 106 70.8
SEGI_09652 Sequoiadendron giganteum HOM05D004948 ORTHO05D005824 8.6e-37 157.9 137 55.5
CSS0008262 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.9e-36 156.8 106 69.8
Pp3c8_900 Physcomitrium patens HOM05D004948 ORTHO05D005824 5.6e-36 155.2 182 45.6
Lj1P1012T60 Lonicera japonica HOM05D004948 ORTHO05D005824 2.9e-32 142.9 108 63.9
CBR_g39340 Chara braunii HOM05D004948 ORTHO05D005824 6.0e-30 135.2 160 40.0
Lalb_Chr23g0271431 Lupinus albus HOM05D004948 ORTHO05D005824 2.8e-19 99.8 157 40.1
MCO05G504 Micromonas commoda HOM05D004948 ORTHO05D005824 4.9e-16 89.0 193 31.1
CSS0022164 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 7.1e-07 58.5 91 41.8
CSS0011379 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.2e-06 57.8 91 41.8


User provided reference genes

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