Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g15140 Schrenkiella parvula HOM05D006023 ORTHO05D007377 3.4e-110 401.7 211 100.0
A02p11390 Brassica napus HOM05D006023 ORTHO05D007377 1.7e-101 372.9 212 94.3
C02p18900 Brassica napus HOM05D006023 ORTHO05D007377 6.4e-101 370.9 212 93.4
BolC2t08031H Brassica oleracea HOM05D006023 ORTHO05D007377 6.4e-101 370.9 212 93.4
BcaB05g21996 Brassica carinata HOM05D006023 ORTHO05D007377 1.1e-100 370.2 213 93.0
BraA02t06203Z Brassica rapa HOM05D006023 ORTHO05D007377 1.1e-100 370.2 212 93.9
AL8G27520 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 4.1e-100 368.2 216 90.3
Carub.0008s1318 Capsella rubella HOM05D006023 ORTHO05D007377 5.4e-100 367.9 217 90.8
Thhalv10014686m.g Eutrema salsugineum HOM05D006023 ORTHO05D007377 9.2e-100 367.1 211 93.4
BcaC03g14468 Brassica carinata HOM05D006023 ORTHO05D007377 4.6e-99 364.8 212 93.4
A10p10460 Brassica napus HOM05D006023 ORTHO05D007377 1.3e-98 363.2 214 91.6
AL8G27580 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 8.6e-98 360.5 213 90.1
AT5G52980 Arabidopsis thaliana HOM05D006023 ORTHO05D007377 1.9e-97 359.4 223 86.5
C09p42690 Brassica napus HOM05D006023 ORTHO05D007377 3.3e-97 358.6 220 88.6
BolC9t57145H Brassica oleracea HOM05D006023 ORTHO05D007377 3.3e-97 358.6 220 88.6
CARHR265970 Cardamine hirsuta HOM05D006023 ORTHO05D007377 3.6e-96 355.1 211 88.6
BraA10t43129Z Brassica rapa HOM05D006023 ORTHO05D007377 4.0e-95 351.7 216 88.0
Aa31LG3G9490 Aethionema arabicum HOM05D006023 ORTHO05D007377 1.2e-86 323.6 211 82.5
AL4G21070 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 6.0e-83 311.2 215 80.9
THA.LOC104806716 Tarenaya hassleriana HOM05D006023 ORTHO05D007377 2.5e-81 305.8 202 79.2
Peaxi162Scf00184g00013 Petunia axillaris HOM05D006023 ORTHO05D007377 1.1e-68 263.8 202 68.8
Actinidia14795 Actinidia chinensis HOM05D006023 ORTHO05D007377 7.1e-68 261.2 207 68.6
CSS0050040 Camellia sinensis var. sinensis HOM05D006023 ORTHO05D007377 3.5e-67 258.8 201 70.6
Hma1.2p1_1379F.1_g279210 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 3.5e-67 258.8 202 67.8
Manes.02G087300 Manihot esculenta HOM05D006023 ORTHO05D007377 3.5e-67 258.8 206 68.4
Prupe.5G032500 Prunus persica HOM05D006023 ORTHO05D007377 4.6e-67 258.5 207 67.1
MELO3C021213.2 Cucumis melo HOM05D006023 ORTHO05D007377 1.0e-66 257.3 192 70.8
Dinv28972 Davidia involucrata HOM05D006023 ORTHO05D007377 1.3e-66 256.9 208 67.8
CsaV3_6G000520 Cucumis sativus L. HOM05D006023 ORTHO05D007377 1.7e-66 256.5 202 69.8
Cfa012466 Carpinus fangiana HOM05D006023 ORTHO05D007377 3.0e-66 255.8 207 67.6
Nitab4.5_0004555g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 3.0e-66 255.8 201 68.2
PGSC0003DMG400027709 Solanum tuberosum HOM05D006023 ORTHO05D007377 5.1e-66 255.0 202 67.8
PSO782G2387 Papaver somniferum HOM05D006023 ORTHO05D007377 3.3e-65 252.3 207 64.3
Sopen08g025290 Solanum pennellii HOM05D006023 ORTHO05D007377 3.3e-65 252.3 202 67.3
CiPaw.12G065700 Carya illinoinensis HOM05D006023 ORTHO05D007377 4.3e-65 251.9 207 67.1
Migut.F00744 Erythranthe guttata HOM05D006023 ORTHO05D007377 7.3e-65 251.1 202 67.8
Cc08_g03000 Coffea canephora HOM05D006023 ORTHO05D007377 1.3e-64 250.4 201 66.2
Glyma.10G212800 Glycine max HOM05D006023 ORTHO05D007377 1.3e-64 250.4 213 64.8
FAN18G1789 Fragaria x ananassa HOM05D006023 ORTHO05D007377 2.1e-64 249.6 210 64.8
PGR031G2123 Punica granatum HOM05D006023 ORTHO05D007377 2.1e-64 249.6 210 65.7
FvH4_5g22440 Fragaria vesca HOM05D006023 ORTHO05D007377 4.8e-64 248.4 210 64.8
Gohir.D08G176200 Gossypium hirsutum HOM05D006023 ORTHO05D007377 4.8e-64 248.4 211 64.5
Gorai.004G184000 Gossypium raimondii HOM05D006023 ORTHO05D007377 4.8e-64 248.4 211 64.5
Glyma.20G178200 Glycine max HOM05D006023 ORTHO05D007377 6.2e-64 248.1 213 65.7
arahy.Tifrunner.gnm1.ann1.NMD1RU Arachis hypogaea HOM05D006023 ORTHO05D007377 8.1e-64 247.7 209 64.1
FAN04G1629 Fragaria x ananassa HOM05D006023 ORTHO05D007377 8.1e-64 247.7 200 65.0
Actinidia09185 Actinidia chinensis HOM05D006023 ORTHO05D007377 1.1e-63 247.3 207 67.1
SGA_v2.0_scaffold6G03147 Striga asiatica HOM05D006023 ORTHO05D007377 1.1e-63 247.3 205 65.9
Gohir.A08G155600 Gossypium hirsutum HOM05D006023 ORTHO05D007377 1.8e-63 246.5 211 63.5
FAN08G2226 Fragaria x ananassa HOM05D006023 ORTHO05D007377 2.4e-63 246.1 210 63.8
FAN13G0319 Fragaria x ananassa HOM05D006023 ORTHO05D007377 2.4e-63 246.1 210 63.8
Gohir.A06G181300 Gossypium hirsutum HOM05D006023 ORTHO05D007377 2.4e-63 246.1 211 64.0
arahy.Tifrunner.gnm1.ann1.T01SKW Arachis hypogaea HOM05D006023 ORTHO05D007377 3.1e-63 245.7 209 63.6
Nn5g27684 Nelumbo nucifera HOM05D006023 ORTHO05D007377 3.1e-63 245.7 204 65.7
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 3.1e-63 245.7 214 64.0
TPR.G1759 Trifolium pratense HOM05D006023 ORTHO05D007377 4.0e-63 245.4 215 63.3
Eucgr.D02210 Eucalyptus grandis HOM05D006023 ORTHO05D007377 5.3e-63 245.0 201 67.2
Phvul.007G092700 Phaseolus vulgaris HOM05D006023 ORTHO05D007377 5.3e-63 245.0 212 64.6
Potri.003G093800 Populus trichocarpa HOM05D006023 ORTHO05D007377 5.3e-63 245.0 209 65.6
Lalb_Chr17g0341511 Lupinus albus HOM05D006023 ORTHO05D007377 6.9e-63 244.6 208 65.4
Atru.chr6.1650 Acer truncatum HOM05D006023 ORTHO05D007377 1.2e-62 243.8 211 64.5
Sopen10g027320 Solanum pennellii HOM05D006023 ORTHO05D007377 1.2e-62 243.8 202 64.4
arahy.Tifrunner.gnm1.ann1.7BP5M1 Arachis hypogaea HOM05D006023 ORTHO05D007377 1.5e-62 243.4 209 63.2
Nitab4.5_0002808g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 1.5e-62 243.4 198 65.7
Ca_10583_v3 Cicer arietinum L. HOM05D006023 ORTHO05D007377 2.0e-62 243.0 207 64.3
Sed0006289 Sechium edule HOM05D006023 ORTHO05D007377 2.0e-62 243.0 202 67.8
TWI81G0073 Tripterygium wilfordii HOM05D006023 ORTHO05D007377 2.0e-62 243.0 201 66.2
Lj5g0000896 Lotus japonicus HOM05D006023 ORTHO05D007377 2.6e-62 242.7 207 65.2
Lj2A236G57 Lonicera japonica HOM05D006023 ORTHO05D007377 3.4e-62 242.3 208 63.5
CANSAT21G1027 Cannabis sativa HOM05D006023 ORTHO05D007377 5.8e-62 241.5 198 63.1
COL.COLO4_16998 Corchorus olitorius HOM05D006023 ORTHO05D007377 7.6e-62 241.1 211 64.0
Thecc.08G177100 Theobroma cacao HOM05D006023 ORTHO05D007377 7.6e-62 241.1 207 64.7
Medtr1g095620 Medicago truncatula HOM05D006023 ORTHO05D007377 1.7e-61 240.0 208 64.4
RcHm_v2.0_Chr7g0210231 Rosa chinensis HOM05D006023 ORTHO05D007377 2.9e-61 239.2 213 62.9
TAR375G0242 Trochodendron aralioides HOM05D006023 ORTHO05D007377 2.9e-61 239.2 212 64.2
GSVIVG01013134001 Vitis vinifera HOM05D006023 ORTHO05D007377 2.9e-61 239.2 211 62.6
Aqoxy4G02643 Aquilegia oxysepala HOM05D006023 ORTHO05D007377 4.9e-61 238.4 199 62.3
Gohir.D06G188100 Gossypium hirsutum HOM05D006023 ORTHO05D007377 4.9e-61 238.4 201 63.7
Gorai.010G220500 Gossypium raimondii HOM05D006023 ORTHO05D007377 4.9e-61 238.4 201 63.2
Hma1.2p1_0303F.1_g118960 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 6.4e-61 238.0 210 61.9
Hund11133 Selenicereus undatus HOM05D006023 ORTHO05D007377 8.4e-61 237.7 201 64.2
Cpa.g.c32853 Carica papaya HOM05D006023 ORTHO05D007377 1.4e-60 236.9 211 62.6
RcHm_v2.0_Chr7g0210201 Rosa chinensis HOM05D006023 ORTHO05D007377 3.2e-60 235.7 201 64.7
Oeu006244.1 Olea europaea HOM05D006023 ORTHO05D007377 5.4e-60 235.0 204 62.7
Sc01g0007360 Simmondsia chinensis HOM05D006023 ORTHO05D007377 5.4e-60 235.0 215 62.8
PSO675G2981 Papaver somniferum HOM05D006023 ORTHO05D007377 7.1e-60 234.6 191 62.8
SGA_v2.0_scaffold196G40921 Striga asiatica HOM05D006023 ORTHO05D007377 4.6e-59 231.9 198 64.6
Rhsim07G0128700 Rhododendron simsii HOM05D006023 ORTHO05D007377 6.0e-59 231.5 244 57.4
Ah.07g200580 Amaranthus hybridus HOM05D006023 ORTHO05D007377 5.1e-58 228.4 194 62.4
Lsat_1_v5_gn_6_80341 Lactuca sativa HOM05D006023 ORTHO05D007377 1.5e-57 226.9 202 61.4
ECA240G0359 Erigeron canadensis HOM05D006023 ORTHO05D007377 2.5e-57 226.1 209 59.3
MD06G1036800 Malus domestica HOM05D006023 ORTHO05D007377 5.6e-57 224.9 206 61.2
EL10Ac5g12082 Beta vulgaris HOM05D006023 ORTHO05D007377 3.7e-56 222.2 204 60.8
Hma1.2p1_0574F.1_g181560 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 8.1e-56 221.1 155 70.3
Hma1.2p1_1379F.1_g279205 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 8.1e-56 221.1 155 70.3
DCAR_004289 Daucus carota HOM05D006023 ORTHO05D007377 2.4e-55 219.5 208 59.6
MBI04_g41609_MAGBIO Magnolia biondii HOM05D006023 ORTHO05D007377 4.0e-55 218.8 210 59.0
HPP92_020908 Vanilla planifolia HOM05D006023 ORTHO05D007377 5.3e-55 218.4 209 55.5
unitig_21.g20896 Utricularia gibba HOM05D006023 ORTHO05D007377 6.9e-55 218.0 203 58.1
PSO541G2859 Papaver somniferum HOM05D006023 ORTHO05D007377 9.0e-55 217.6 171 63.7
Psat6g182880 Pisum sativum HOM05D006023 ORTHO05D007377 4.2e-52 208.8 161 68.9
Ciclev10022247m.g Citrus clementina HOM05D006023 ORTHO05D007377 3.9e-50 202.2 161 65.8
ATR0665G562 Amborella trichopoda HOM05D006023 ORTHO05D007377 6.7e-50 201.4 186 57.5
CAN.G298.27 Capsicum annuum HOM05D006023 ORTHO05D007377 1.1e-47 194.1 141 73.0
HanXRQChr13g0414191 Helianthus annuus HOM05D006023 ORTHO05D007377 6.9e-47 191.4 157 61.8
Zm00001eb024850 Zea mays HOM05D006023 ORTHO05D007377 1.1e-44 184.1 157 60.5
vmacro14181 Vaccinium macrocarpon HOM05D006023 ORTHO05D007377 1.2e-43 180.6 364 36.8
CDE06G2650 Ceratophyllum demersum HOM05D006023 ORTHO05D007377 5.7e-41 171.8 185 53.5
Solyc08g076770.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 1.8e-39 166.8 128 66.4
PGSC0003DMG400017522 Solanum tuberosum HOM05D006023 ORTHO05D007377 3.4e-38 162.5 132 63.6
Mapoly0102s0011 Marchantia polymorpha HOM05D006023 ORTHO05D007377 1.9e-36 156.8 211 43.6
BcaNung06895 Brassica carinata HOM05D006023 ORTHO05D007377 1.6e-35 153.7 89 86.5
MSTRG.15799 Avicennia marina HOM05D006023 ORTHO05D007377 6.7e-34 148.3 118 69.5
AUR62018698 Chenopodium quinoa HOM05D006023 ORTHO05D007377 6.7e-34 148.3 123 68.3
PSO063G6826 Papaver somniferum HOM05D006023 ORTHO05D007377 6.7e-34 148.3 115 67.0
Pp3c18_16040 Physcomitrium patens HOM05D006023 ORTHO05D007377 3.3e-33 146.0 193 41.5
FAN18G1032 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.8e-31 140.2 136 56.6
ClCG06G003760 Citrullus lanatus HOM05D006023 ORTHO05D007377 5.3e-31 138.7 109 67.9
Duzib068G1405 Durio zibethinus HOM05D006023 ORTHO05D007377 7.7e-30 134.8 131 60.3
CBR_g88177 Chara braunii HOM05D006023 ORTHO05D007377 2.7e-27 126.3 121 54.5
SMO143G0066 Selaginella moellendorffii HOM05D006023 ORTHO05D007377 2.2e-24 116.7 194 35.1
AagrBONN_evm.TU.Sc2ySwM_228.1949 Anthoceros agrestis HOM05D006023 ORTHO05D007377 7.0e-23 111.7 135 49.6
Dinv25231 Davidia involucrata HOM05D006023 ORTHO05D007377 7.7e-22 108.2 68 80.9
SEGI_27853 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 3.2e-20 102.8 127 49.6
Solyc08g076740.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 8.8e-18 94.7 76 69.7
FAN18G2414 Fragaria x ananassa HOM05D006023 ORTHO05D007377 4.8e-16 89.0 76 65.8
AUR62007305 Chenopodium quinoa HOM05D006023 ORTHO05D007377 5.9e-14 82.0 75 61.3
Cre10.g438750 Chlamydomonas reinhardtii HOM05D006023 ORTHO05D007377 6.5e-13 78.6 186 29.6
MD16G1272600 Malus domestica HOM05D006023 ORTHO05D007377 1.9e-12 77.0 68 55.9
Solyc10g074822.1 Solanum lycopersicum HOM05D006023 ORTHO05D007377 7.2e-12 75.1 47 76.6
SEGI_36898 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 1.2e-09 67.8 47 68.1
Os02g0225300 Oryza sativa ssp. japonica HOM05D006023 ORTHO05D007377 9.1e-07 58.2 60 48.3


User provided reference genes

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