Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g15110 Schrenkiella parvula HOM05D005720 ORTHO05D006984 0.0e+00 1806.6 952 100.0
Thhalv10012590m.g Eutrema salsugineum HOM05D005720 ORTHO05D006984 0.0e+00 1531.2 952 83.7
A02p11480 Brassica napus HOM05D005720 ORTHO05D006984 0.0e+00 1515.4 952 85.7
C02p19150 Brassica napus HOM05D005720 ORTHO05D006984 0.0e+00 1507.7 951 85.4
BcaC03g14481 Brassica carinata HOM05D005720 ORTHO05D006984 0.0e+00 1505.3 951 85.6
BolC2t08045H Brassica oleracea HOM05D005720 ORTHO05D006984 0.0e+00 1504.6 951 85.0
BraA02t06213Z Brassica rapa HOM05D005720 ORTHO05D006984 0.0e+00 1501.9 951 85.1
C09p42670 Brassica napus HOM05D005720 ORTHO05D006984 0.0e+00 1488.8 954 84.0
BolC9t57143H Brassica oleracea HOM05D005720 ORTHO05D006984 0.0e+00 1488.8 954 84.0
AL8G27450 Arabidopsis lyrata HOM05D005720 ORTHO05D006984 0.0e+00 1439.9 955 79.4
CARHR265920 Cardamine hirsuta HOM05D005720 ORTHO05D006984 0.0e+00 1407.5 953 77.8
AT5G52950 Arabidopsis thaliana HOM05D005720 ORTHO05D006984 0.0e+00 1389.4 956 77.2
Carub.0008s1313 Capsella rubella HOM05D005720 ORTHO05D006984 0.0e+00 1364.7 959 75.7
Aa31LG3G9180 Aethionema arabicum HOM05D005720 ORTHO05D006984 0.0e+00 1223.0 959 69.1
THA.LOC104825125 Tarenaya hassleriana HOM05D005720 ORTHO05D006984 2.1e-276 956.1 969 55.8
BcaB08g35658 Brassica carinata HOM05D005720 ORTHO05D006984 7.7e-263 911.0 568 81.9
BcaB05g21993 Brassica carinata HOM05D005720 ORTHO05D006984 7.2e-245 851.3 954 55.8
Thecc.03G190400 Theobroma cacao HOM05D005720 ORTHO05D006984 4.2e-184 649.4 1028 41.7
Gohir.A09G183200 Gossypium hirsutum HOM05D005720 ORTHO05D006984 1.8e-182 644.0 1010 42.0
QL09p011597 Quercus lobata HOM05D005720 ORTHO05D006984 1.8e-182 644.0 1025 42.5
Cfa016346 Carpinus fangiana HOM05D005720 ORTHO05D006984 4.8e-180 636.0 1018 42.1
Gohir.D09G177900 Gossypium hirsutum HOM05D005720 ORTHO05D006984 6.2e-180 635.6 1010 41.6
Duzib084G1243 Durio zibethinus HOM05D005720 ORTHO05D006984 3.8e-177 626.3 1016 41.2
CiPaw.06G006200 Carya illinoinensis HOM05D005720 ORTHO05D006984 4.6e-175 619.4 1016 41.7
COL.COLO4_24780 Corchorus olitorius HOM05D005720 ORTHO05D006984 3.9e-174 616.3 1069 39.6
Manes.06G155900 Manihot esculenta HOM05D005720 ORTHO05D006984 2.2e-172 610.5 1010 40.9
GSVIVG01028746001 Vitis vinifera HOM05D005720 ORTHO05D006984 4.8e-172 609.4 990 41.5
Gorai.006G200000 Gossypium raimondii HOM05D005720 ORTHO05D006984 8.2e-172 608.6 1010 40.8
MD01G1213400 Malus domestica HOM05D005720 ORTHO05D006984 1.8e-171 607.4 1011 40.8
Potri.012G033800 Populus trichocarpa HOM05D005720 ORTHO05D006984 9.4e-168 595.1 1008 40.4
Prupe.2G305400 Prunus persica HOM05D005720 ORTHO05D006984 1.6e-167 594.3 1020 39.6
MD07G1283200 Malus domestica HOM05D005720 ORTHO05D006984 2.7e-167 593.6 1015 39.8
Sabra12G0022900 Salix brachista HOM05D005720 ORTHO05D006984 2.2e-164 583.9 1004 40.4
TWI39G1277 Tripterygium wilfordii HOM05D005720 ORTHO05D006984 2.6e-162 577.0 1026 38.7
Cpa.g.sc3.32 Carica papaya HOM05D005720 ORTHO05D006984 6.1e-159 565.8 1001 39.8
Dinv28352 Davidia involucrata HOM05D005720 ORTHO05D006984 2.9e-153 547.0 1024 38.1
FAN03G0014 Fragaria x ananassa HOM05D005720 ORTHO05D006984 3.6e-151 540.0 1010 38.0
FvH4_7g30790 Fragaria vesca HOM05D005720 ORTHO05D006984 3.0e-150 537.0 1007 37.4
Nn1g01775 Nelumbo nucifera HOM05D005720 ORTHO05D006984 5.2e-150 536.2 1038 38.4
FAN01G1865 Fragaria x ananassa HOM05D005720 ORTHO05D006984 3.3e-149 533.5 1012 37.5
Haze_00092 Corylus avellana HOM05D005720 ORTHO05D006984 5.7e-149 532.7 1019 38.8
FAN06G1427 Fragaria x ananassa HOM05D005720 ORTHO05D006984 2.2e-148 530.8 1014 37.0
FAN06G3446 Fragaria x ananassa HOM05D005720 ORTHO05D006984 3.1e-147 526.9 1011 37.0
RcHm_v2.0_Chr1g0379731 Rosa chinensis HOM05D005720 ORTHO05D006984 8.8e-142 508.8 892 38.6
Cc02_g02050 Coffea canephora HOM05D005720 ORTHO05D006984 1.2e-138 498.4 1000 37.4
arahy.Tifrunner.gnm1.ann1.35A5BC Arachis hypogaea HOM05D005720 ORTHO05D006984 5.9e-138 496.1 1072 34.8
Hma1.2p1_0142F.1_g064130 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 1.0e-137 495.4 1019 37.5
CsaV3_4G002370 Cucumis sativus L. HOM05D005720 ORTHO05D006984 5.0e-137 493.0 1017 37.2
arahy.Tifrunner.gnm1.ann1.YA4Y9S Arachis hypogaea HOM05D005720 ORTHO05D006984 2.5e-136 490.7 1067 34.3
Rhsim03G0197100 Rhododendron simsii HOM05D005720 ORTHO05D006984 2.5e-136 490.7 1027 36.6
AUR62031469 Chenopodium quinoa HOM05D005720 ORTHO05D006984 1.6e-135 488.0 1014 36.5
Oeu037117.2 Olea europaea HOM05D005720 ORTHO05D006984 2.0e-133 481.1 1015 36.8
EL10Ac3g05366 Beta vulgaris HOM05D005720 ORTHO05D006984 9.8e-133 478.8 1012 36.0
Ca_27881_v3 Cicer arietinum L. HOM05D005720 ORTHO05D006984 3.7e-132 476.9 1015 36.9
FAN10G0387 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.1e-131 475.3 990 35.8
FAN10G2558 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.8e-131 474.6 818 38.0
Hund11695 Selenicereus undatus HOM05D005720 ORTHO05D006984 5.9e-130 469.5 997 36.1
MELO3C017804.2 Cucumis melo HOM05D005720 ORTHO05D006984 2.9e-129 467.2 980 36.4
Eucgr.K00315 Eucalyptus grandis HOM05D005720 ORTHO05D006984 5.0e-129 466.5 1024 36.6
Actinidia08611 Actinidia chinensis HOM05D005720 ORTHO05D006984 1.1e-128 465.3 871 38.2
TPR.G16464 Trifolium pratense HOM05D005720 ORTHO05D006984 1.8e-126 458.0 1012 35.9
BraA10t43127Z Brassica rapa HOM05D005720 ORTHO05D006984 6.8e-126 456.1 319 77.1
MD01G1213200 Malus domestica HOM05D005720 ORTHO05D006984 1.3e-124 451.8 880 36.8
Medtr8g058270 Medicago truncatula HOM05D005720 ORTHO05D006984 7.0e-123 446.0 1051 35.3
Lalb_Chr06g0161451 Lupinus albus HOM05D005720 ORTHO05D006984 2.0e-122 444.5 1021 35.1
Aqoxy7G00210 Aquilegia oxysepala HOM05D005720 ORTHO05D006984 3.5e-122 443.7 1025 35.1
Glyma.16G069100 Glycine max HOM05D005720 ORTHO05D006984 4.3e-120 436.8 1017 35.3
PSO384G4812 Papaver somniferum HOM05D005720 ORTHO05D006984 4.3e-120 436.8 1022 33.6
Sc13g0009450 Simmondsia chinensis HOM05D005720 ORTHO05D006984 5.6e-120 436.4 1013 34.8
TAR629G0723 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.2e-119 435.3 782 39.9
PSO135G0324 Papaver somniferum HOM05D005720 ORTHO05D006984 2.8e-119 434.1 1020 34.0
TAR636G3648 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.4e-118 431.8 797 37.4
Lj3g0007394 Lotus japonicus HOM05D005720 ORTHO05D006984 4.0e-118 430.3 998 34.2
Lsat_1_v5_gn_1_45000 Lactuca sativa HOM05D005720 ORTHO05D006984 1.2e-117 428.7 989 35.2
HanXRQChr01g0031161 Helianthus annuus HOM05D005720 ORTHO05D006984 9.2e-115 419.1 1003 34.7
MBI06_g04292_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 1.6e-114 418.3 1031 33.4
Ah.07g206170 Amaranthus hybridus HOM05D005720 ORTHO05D006984 2.0e-114 417.9 1020 32.5
Solyc03g007550.4 Solanum lycopersicum HOM05D005720 ORTHO05D006984 5.6e-112 409.8 986 33.6
MSTRG.27056 Avicennia marina HOM05D005720 ORTHO05D006984 9.5e-112 409.1 1018 34.3
Sopen03g003510 Solanum pennellii HOM05D005720 ORTHO05D006984 1.2e-111 408.7 985 33.6
ECA248G2416 Erigeron canadensis HOM05D005720 ORTHO05D006984 4.7e-111 406.8 997 33.6
DCAR_010640 Daucus carota HOM05D005720 ORTHO05D006984 1.8e-110 404.8 989 34.3
Migut.F00255 Erythranthe guttata HOM05D005720 ORTHO05D006984 4.0e-110 403.7 986 34.4
HanXRQChr11g0353671 Helianthus annuus HOM05D005720 ORTHO05D006984 8.9e-110 402.5 997 33.5
AUR62021063 Chenopodium quinoa HOM05D005720 ORTHO05D006984 2.9e-108 397.5 1007 32.9
Nitab4.5_0000472g0110 Nicotiana tabacum HOM05D005720 ORTHO05D006984 2.9e-108 397.5 1007 33.6
Peaxi162Scf00904g00464 Petunia axillaris HOM05D005720 ORTHO05D006984 8.3e-108 396.0 1020 32.5
SalBow4G2908 Salvia bowleyana HOM05D005720 ORTHO05D006984 1.1e-107 395.6 990 34.1
ClCG07G011830 Citrullus lanatus HOM05D005720 ORTHO05D006984 1.4e-107 395.2 1017 33.5
CAN.G108.10 Capsicum annuum HOM05D005720 ORTHO05D006984 3.2e-107 394.0 998 32.9
SalBow4G2744 Salvia bowleyana HOM05D005720 ORTHO05D006984 1.6e-106 391.7 991 34.0
VMungo1127G0215 Vigna mungo HOM05D005720 ORTHO05D006984 1.7e-105 388.3 988 32.9
Psat4g140280 Pisum sativum HOM05D005720 ORTHO05D006984 1.9e-104 384.8 881 36.0
SHI10811 Sapria himalayana HOM05D005720 ORTHO05D006984 3.6e-103 380.6 892 33.7
HPP92_005221 Vanilla planifolia HOM05D005720 ORTHO05D006984 1.3e-92 345.5 940 32.6
SGA_v2.0_scaffold192G40596 Striga asiatica HOM05D005720 ORTHO05D006984 5.1e-89 333.6 938 31.6
unitig_747.g21855 Utricularia gibba HOM05D000121 ORTHO05D000102 2.8e-87 327.8 1051 30.7
PGR142G3228 Punica granatum HOM05D005720 ORTHO05D006984 9.9e-85 319.3 1015 30.3
Phvul.011G167400 Phaseolus vulgaris HOM05D005720 ORTHO05D006984 1.1e-80 305.8 658 35.1
ATR1131G019 Amborella trichopoda HOM05D005720 ORTHO05D006984 1.5e-80 305.4 993 29.0
Hma1.2p1_0142F.1_g064120 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 1.1e-78 299.3 477 41.1
vmacro06588 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 2.9e-76 291.2 627 35.2
CDE02G2607 Ceratophyllum demersum HOM05D005720 ORTHO05D006984 1.4e-75 288.9 850 30.1
Nitab4.5_0001331g0120 Nicotiana tabacum HOM05D005720 ORTHO05D006984 3.9e-73 280.8 1010 28.6
Hma1.2p1_1891F.1_g306670 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 8.7e-73 279.6 919 30.0
Zm00001eb119640 Zea mays HOM05D005720 ORTHO05D006984 3.4e-69 267.7 1008 28.5
CSS0019438 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 1.8e-57 228.8 486 36.6
Lj3P914T60 Lonicera japonica HOM05D005720 ORTHO05D006984 1.5e-56 225.7 353 40.8
BcaB08g35657 Brassica carinata HOM05D005720 ORTHO05D006984 5.7e-56 223.8 167 83.2
SEGI_30168 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 6.9e-54 216.9 1089 25.2
CSS0038820 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 2.6e-53 214.9 488 34.2
Lj3A914T79 Lonicera japonica HOM05D005720 ORTHO05D006984 1.7e-52 212.2 602 32.9
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 1.0e-49 203.0 423 38.5
HPP92_005214 Vanilla planifolia HOM05D005720 ORTHO05D006984 1.0e-49 203.0 936 26.4
Sed0011275 Sechium edule HOM05D005720 ORTHO05D006984 1.3e-47 196.1 365 39.2
Hma1.2p1_0142F.1_g064140 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 2.6e-40 171.8 408 36.3
TAR629G3278 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.1e-30 139.8 249 39.8
MBI16_g03131_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 3.1e-30 138.3 311 33.4
vmacro06589 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 4.4e-24 117.9 299 33.1
Os01g0222300 Oryza sativa ssp. japonica HOM05D005720 ORTHO05D006984 2.2e-23 115.5 362 32.0
SEGI_32546 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 4.8e-23 114.4 601 23.5
PGSC0003DMG400006595 Solanum tuberosum HOM05D005720 ORTHO05D006984 9.1e-22 110.2 256 35.2
Pp3c15_13500 Physcomitrium patens HOM05D005720 ORTHO05D006984 8.9e-09 67.0 126 35.7
RcHm_v2.0_Chr1g0379741 Rosa chinensis HOM05D005720 ORTHO05D006984 1.5e-08 66.2 73 57.5
MBI16_g03132_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 5.7e-08 64.3 156 34.6
Mapoly0039s0001 Marchantia polymorpha HOM05D005720 ORTHO05D006984 2.2e-07 62.4 273 27.8
AagrBONN_evm.TU.Sc2ySwM_117.1094 Anthoceros agrestis HOM05D005720 ORTHO05D006984 6.4e-07 60.8 254 26.4
Lju188P3T29 Lonicera japonica HOM05D005720 ORTHO05D006984 4.1e-06 58.2 88 45.5


User provided reference genes

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