Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 0.0e+00 2257.3 1164 100.0
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 0.0e+00 1898.6 1181 85.4
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 0.0e+00 1885.2 1181 84.7
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 0.0e+00 1881.3 1181 84.6
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 0.0e+00 1878.6 1181 84.5
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 0.0e+00 1874.0 1182 84.2
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 0.0e+00 1869.7 1182 84.1
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 0.0e+00 1869.7 1182 84.1
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 0.0e+00 1839.7 1184 82.8
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 0.0e+00 1831.6 1181 82.5
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 0.0e+00 1795.8 1191 80.6
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 0.0e+00 1793.9 1177 80.5
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 0.0e+00 1671.0 1187 74.8
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 0.0e+00 1444.5 1179 67.3
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 0.0e+00 1092.0 1214 53.3
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 0.0e+00 1084.3 1134 55.0
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 0.0e+00 1080.1 1189 53.9
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 3.3e-308 1062.0 1078 55.7
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 1.2e-305 1053.5 1220 51.3
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 5.8e-305 1051.2 1246 51.0
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 4.6e-302 1041.6 1286 49.6
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 1.3e-301 1040.0 1230 51.2
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 6.7e-301 1037.7 1108 54.5
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 1.1e-298 1030.4 1278 50.6
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 5.3e-298 1028.1 1187 52.4
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 1.1e-295 1020.4 1311 48.4
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 4.6e-294 1015.0 1133 52.2
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 6.7e-293 1011.1 1224 51.0
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 2.5e-292 1009.2 1267 49.6
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 2.5e-292 1009.2 1109 52.6
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 1.6e-291 1006.5 1272 47.9
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 3.7e-291 1005.4 1261 48.1
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 4.8e-291 1005.0 1230 49.9
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 8.2e-291 1004.2 1202 50.2
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 1.1e-290 1003.8 1271 48.2
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 1.4e-290 1003.4 1224 49.3
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 1.2e-289 1000.3 1272 48.2
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 2.5e-287 992.6 1184 51.9
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 7.2e-287 991.1 1266 48.5
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 4.6e-286 988.4 1223 49.6
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 8.8e-285 984.2 1140 50.3
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 1.5e-284 983.4 1267 49.0
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 2.5e-284 982.6 1260 48.7
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 6.9e-282 974.5 1199 49.8
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.5e-281 973.4 1269 47.8
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 4.5e-281 971.8 1271 48.2
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 1.0e-280 970.7 1130 51.1
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 1.0e-280 970.7 1283 48.2
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 1.3e-280 970.3 992 56.0
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 1.3e-280 970.3 1260 47.5
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 4.2e-279 965.3 1148 49.5
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 1.2e-278 963.8 958 56.1
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 8.8e-277 957.6 1106 50.4
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 5.3e-274 948.3 1257 46.5
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 1.2e-273 947.2 1086 50.9
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 2.6e-273 946.0 1298 45.2
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 3.6e-270 935.6 1214 48.5
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 6.1e-270 934.9 1286 46.0
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 6.1e-270 934.9 1267 46.9
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 1.4e-269 933.7 1225 46.4
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 2.0e-268 929.9 1239 47.9
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 4.4e-268 928.7 1094 50.9
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 6.3e-267 924.9 1218 48.4
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 6.3e-267 924.9 1270 45.2
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 7.7e-265 917.9 1343 44.5
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 1.6e-262 910.2 1251 45.6
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 5.2e-261 905.2 1274 45.6
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 4.4e-260 902.1 1163 48.4
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 8.3e-259 897.9 1245 45.5
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 1.4e-258 897.1 1188 46.3
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 9.1e-258 894.4 923 54.9
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 5.9e-257 891.7 1114 47.7
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 1.3e-256 890.6 1301 44.1
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 2.2e-256 889.8 1242 45.5
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 2.9e-256 889.4 1330 43.3
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 3.8e-256 889.0 1118 48.2
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 5.0e-256 888.6 1229 46.3
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 2.7e-254 882.9 1306 43.6
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 4.0e-253 879.0 1186 46.0
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 4.4e-252 875.5 1313 43.6
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.4e-250 870.5 1301 44.3
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 5.4e-250 868.6 915 54.4
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 3.5e-249 865.9 1163 45.3
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 2.8e-246 856.3 1210 45.9
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 1.3e-240 837.4 1086 46.7
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 1.9e-239 833.6 1135 47.0
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 1.6e-230 803.9 1279 42.1
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 1.8e-229 800.4 1304 40.9
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 2.6e-228 796.6 1225 42.8
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 3.7e-227 792.7 978 48.4
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 1.4e-213 747.7 1150 42.5
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 4.0e-213 746.1 1118 42.7
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 1.9e-207 727.2 1178 41.6
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 6.2e-206 722.2 1122 43.5
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 1.1e-205 721.5 1202 40.8
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 3.4e-204 716.5 1224 40.4
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 1.5e-199 701.0 1168 40.6
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 1.1e-194 684.9 1241 38.6
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 1.6e-190 671.0 958 45.9
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 9.0e-189 665.2 961 42.9
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 8.7e-184 648.7 552 61.8
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 5.0e-179 632.9 1158 38.7
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 2.2e-174 617.5 515 64.3
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 6.1e-169 599.4 1206 36.8
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 1.9e-162 577.8 525 57.7
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 2.6e-159 567.4 965 37.8
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 4.0e-152 543.5 1209 33.3
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 6.1e-129 466.5 1263 29.8
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 3.7e-126 457.2 673 42.5
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 1.8e-96 358.6 961 29.1
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 4.6e-84 317.4 490 43.3
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.3e-75 289.3 246 64.2
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 3.0e-67 261.5 297 49.5
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 1.8e-51 209.1 163 62.6
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 3.0e-51 208.4 266 44.0
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 2.6e-50 205.3 162 63.6
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 3.2e-45 188.3 136 71.3
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 1.2e-36 159.8 600 26.8
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 7.5e-34 150.6 105 65.7
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 1.2e-31 143.3 114 64.0
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 4.7e-28 131.3 118 57.6
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 5.2e-27 127.9 84 69.0
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 8.8e-27 127.1 106 60.4
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 1.1e-24 120.2 225 36.0
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 2.1e-20 105.9 407 27.3
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 6.1e-20 104.4 121 47.1
FAN06G3414 Fragaria x ananassa HOM05D005400 ORTHO05D006668 8.0e-20 104.0 119 50.4
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 3.0e-19 102.1 131 48.1
FAN06G1858 Fragaria x ananassa HOM05D005400 ORTHO05D006668 5.2e-19 101.3 124 49.2
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 2.2e-17 95.9 132 44.7
arahy.Tifrunner.gnm1.ann1.58WBAP Arachis hypogaea HOM05D005400 ORTHO05D006668 1.1e-16 93.6 131 42.7
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 3.8e-14 85.1 71 60.6
FAN08G2853 Fragaria x ananassa HOM05D010729 ORTHO05D011897 4.4e-10 71.6 105 41.0
SHI13741 Sapria himalayana HOM05D005400 ORTHO05D006668 7.5e-10 70.9 87 44.8
SMO171G0132 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 1.4e-08 66.6 93 37.6
Dinv07570 Davidia involucrata HOM05D000001 ORTHO05D000003 8.6e-06 57.4 119 38.7


User provided reference genes

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