Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g15070 Schrenkiella parvula HOM05D002932 ORTHO05D003208 1.5e-130 469.5 235 100.0
Thhalv10014576m.g Eutrema salsugineum HOM05D002932 ORTHO05D003208 3.7e-110 401.7 235 86.0
A10p10380 Brassica napus HOM05D002932 ORTHO05D003208 9.2e-109 397.1 232 86.6
BraA10t43121Z Brassica rapa HOM05D002932 ORTHO05D003208 9.2e-109 397.1 232 86.6
C09p42630 Brassica napus HOM05D002932 ORTHO05D003208 2.7e-108 395.6 232 86.6
BolC9t57139H Brassica oleracea HOM05D002932 ORTHO05D003208 2.7e-108 395.6 232 86.6
BolC2t08047H Brassica oleracea HOM05D002932 ORTHO05D003208 3.5e-108 395.2 232 85.8
AT5G52900 Arabidopsis thaliana HOM05D002932 ORTHO05D003208 1.7e-107 392.9 236 83.5
BcaB05g21990 Brassica carinata HOM05D002932 ORTHO05D003208 5.1e-107 391.3 237 86.1
A02p11520 Brassica napus HOM05D002932 ORTHO05D003208 8.6e-107 390.6 232 84.9
C02p19170 Brassica napus HOM05D002932 ORTHO05D003208 5.6e-106 387.9 223 87.4
CARHR265860 Cardamine hirsuta HOM05D002932 ORTHO05D003208 7.3e-106 387.5 241 83.0
A03p15470 Brassica napus HOM05D002932 ORTHO05D003208 2.8e-105 385.6 235 84.3
BraA03t10842Z Brassica rapa HOM05D002932 ORTHO05D003208 2.8e-105 385.6 235 84.3
BraA02t06216Z Brassica rapa HOM05D002932 ORTHO05D003208 3.6e-105 385.2 225 86.2
BcaB08g35654 Brassica carinata HOM05D002932 ORTHO05D003208 1.1e-104 383.6 238 83.6
BcaC01g06213 Brassica carinata HOM05D002932 ORTHO05D003208 1.4e-104 383.3 236 83.9
BcaC03g14485 Brassica carinata HOM05D002932 ORTHO05D003208 1.4e-104 383.3 223 86.5
BcaC04g20524 Brassica carinata HOM05D002932 ORTHO05D003208 5.2e-104 381.3 232 84.9
C03p18060 Brassica napus HOM05D002932 ORTHO05D003208 1.2e-103 380.2 235 83.4
BolC3t14211H Brassica oleracea HOM05D002932 ORTHO05D003208 1.2e-103 380.2 235 83.4
BcaB01g04222 Brassica carinata HOM05D002932 ORTHO05D003208 3.4e-103 378.6 236 82.2
AL8G27370 Arabidopsis lyrata HOM05D002932 ORTHO05D003208 3.2e-101 372.1 235 80.0
Carub.0008s1309 Capsella rubella HOM05D002932 ORTHO05D003208 3.5e-84 315.5 242 71.5
THA.LOC104825123 Tarenaya hassleriana HOM05D002932 ORTHO05D003208 1.1e-56 224.2 242 56.6
THA.LOC104811937 Tarenaya hassleriana HOM05D002932 ORTHO05D003208 1.5e-55 220.3 241 57.7
Aa31LG3G9150 Aethionema arabicum HOM05D002932 ORTHO05D003208 1.2e-52 210.7 257 55.3
Sabra12G0024300 Salix brachista HOM05D002932 ORTHO05D003208 1.7e-38 163.7 240 48.8
QL09p012032 Quercus lobata HOM05D002932 ORTHO05D003208 6.5e-38 161.8 241 47.3
Potri.015G026600 Populus trichocarpa HOM05D002932 ORTHO05D003208 7.2e-37 158.3 239 50.2
Duzib084G0326 Durio zibethinus HOM05D002932 ORTHO05D003208 1.2e-36 157.5 236 46.2
Potri.012G035200 Populus trichocarpa HOM05D002932 ORTHO05D003208 2.1e-36 156.8 243 47.7
Thecc.03G188500 Theobroma cacao HOM05D002932 ORTHO05D003208 2.1e-36 156.8 236 47.9
Duzib205G0983 Durio zibethinus HOM05D002932 ORTHO05D003208 3.6e-36 156.0 236 47.0
Cfa016327 Carpinus fangiana HOM05D002932 ORTHO05D003208 1.0e-35 154.5 240 44.6
Phvul.007G077100 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 3.0e-35 152.9 235 45.1
Lalb_Chr03g0035141 Lupinus albus HOM05D002932 ORTHO05D003208 6.8e-35 151.8 226 42.9
Haze_00079 Corylus avellana HOM05D002932 ORTHO05D003208 2.0e-34 150.2 241 44.4
FvH4_7g30650 Fragaria vesca HOM05D002932 ORTHO05D003208 2.0e-34 150.2 257 44.0
FAN06G0995 Fragaria x ananassa HOM05D002932 ORTHO05D003208 2.0e-34 150.2 257 44.0
RcHm_v2.0_Chr1g0379591 Rosa chinensis HOM05D002932 ORTHO05D003208 2.0e-34 150.2 256 43.8
COL.COLO4_30256 Corchorus olitorius HOM05D002932 ORTHO05D003208 2.6e-34 149.8 242 46.3
Prupe.2G304400 Prunus persica HOM05D002932 ORTHO05D003208 2.6e-34 149.8 245 42.9
TPR.G7742 Trifolium pratense HOM05D002932 ORTHO05D003208 3.4e-34 149.4 239 45.2
Sabra15G0019600 Salix brachista HOM05D002932 ORTHO05D003208 4.4e-34 149.1 233 46.4
Dinv35290 Davidia involucrata HOM05D002932 ORTHO05D003208 5.7e-34 148.7 234 44.9
Duzib068G0647 Durio zibethinus HOM05D002932 ORTHO05D003208 7.5e-34 148.3 238 46.6
VMungo0720G0620 Vigna mungo HOM05D002932 ORTHO05D003208 9.8e-34 147.9 236 45.3
FAN10G0880 Fragaria x ananassa HOM05D002932 ORTHO05D003208 1.3e-33 147.5 257 43.2
FAN10G1573 Fragaria x ananassa HOM05D002932 ORTHO05D003208 1.3e-33 147.5 257 43.2
Medtr1g099440 Medicago truncatula HOM05D002932 ORTHO05D003208 1.3e-33 147.5 230 43.5
Cpa.g.sc3.12 Carica papaya HOM05D002932 ORTHO05D003208 1.7e-33 147.1 235 47.2
Psat0s694g0080 Pisum sativum HOM05D002932 ORTHO05D003208 2.2e-33 146.7 240 43.8
TWI23G0695 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 2.2e-33 146.7 239 45.6
Glyma.16G173400 Glycine max HOM05D002932 ORTHO05D003208 2.8e-33 146.4 235 43.0
MD07G1282200 Malus domestica HOM05D002932 ORTHO05D003208 3.7e-33 146.0 245 42.4
Manes.14G020200 Manihot esculenta HOM05D002932 ORTHO05D003208 3.7e-33 146.0 244 45.5
GSVIVG01028788001 Vitis vinifera HOM05D003816 ORTHO05D004410 4.8e-33 145.6 236 46.6
Sabra15G0022400 Salix brachista HOM05D002932 ORTHO05D003208 6.3e-33 145.2 225 45.8
Glyma.20G164000 Glycine max HOM05D002932 ORTHO05D003208 1.1e-32 144.4 236 44.9
Glyma.09G126400 Glycine max HOM05D002932 ORTHO05D003208 1.4e-32 144.1 238 42.9
Manes.06G154700 Manihot esculenta HOM05D002932 ORTHO05D003208 1.4e-32 144.1 237 44.7
TWI14G1190 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 1.8e-32 143.7 233 45.9
Glyma.10G229200 Glycine max HOM05D002932 ORTHO05D003208 2.4e-32 143.3 240 43.8
Sed0008251 Sechium edule HOM05D002932 ORTHO05D003208 2.4e-32 143.3 231 44.6
arahy.Tifrunner.gnm1.ann1.N7QM32 Arachis hypogaea HOM05D002932 ORTHO05D003208 3.1e-32 142.9 254 40.6
ClCG05G008540 Citrullus lanatus HOM05D002932 ORTHO05D003208 3.1e-32 142.9 242 45.5
FAN03G0587 Fragaria x ananassa HOM05D002932 ORTHO05D003208 3.1e-32 142.9 262 42.7
Lalb_Chr01g0009541 Lupinus albus HOM05D002932 ORTHO05D003208 3.1e-32 142.9 227 43.2
Phvul.004G102700 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 3.1e-32 142.9 238 44.5
arahy.Tifrunner.gnm1.ann1.M5AIDB Arachis hypogaea HOM05D002932 ORTHO05D003208 4.1e-32 142.5 253 40.7
Gohir.A12G254433 Gossypium hirsutum HOM05D002932 ORTHO05D003208 4.1e-32 142.5 236 45.8
Lj2g0001659 Lotus japonicus HOM05D002932 ORTHO05D003208 5.4e-32 142.1 242 43.0
MD01G1211600 Malus domestica HOM05D002932 ORTHO05D003208 5.4e-32 142.1 245 41.6
VMungo0464G0277 Vigna mungo HOM05D002932 ORTHO05D003208 9.1e-32 141.4 238 43.7
Dinv28362 Davidia involucrata HOM05D002932 ORTHO05D003208 1.2e-31 141.0 234 44.0
Gohir.D12G255000 Gossypium hirsutum HOM05D002932 ORTHO05D003208 2.0e-31 140.2 238 45.0
Gorai.008G272600 Gossypium raimondii HOM05D002932 ORTHO05D003208 2.0e-31 140.2 238 45.0
MELO3C006960.2 Cucumis melo HOM05D002932 ORTHO05D003208 4.5e-31 139.0 239 44.8
Psat1g099240 Pisum sativum HOM05D002932 ORTHO05D003208 4.5e-31 139.0 249 42.2
CsaV3_3G021720 Cucumis sativus L. HOM05D002932 ORTHO05D003208 1.7e-30 137.1 239 44.4
Lj5g0016966 Lotus japonicus HOM05D002932 ORTHO05D003208 1.7e-30 137.1 232 44.4
CiPaw.06G005800 Carya illinoinensis HOM05D002932 ORTHO05D003208 2.9e-30 136.3 244 43.4
Actinidia03151 Actinidia chinensis HOM05D002932 ORTHO05D003208 3.8e-30 136.0 228 43.9
PGR042G1004 Punica granatum HOM05D002932 ORTHO05D003208 1.1e-29 134.4 236 41.9
Sed0015119 Sechium edule HOM05D002932 ORTHO05D003208 1.1e-29 134.4 234 44.4
Ciclev10005884m.g Citrus clementina HOM05D002932 ORTHO05D003208 1.9e-29 133.7 214 45.8
FAN01G1179 Fragaria x ananassa HOM05D002932 ORTHO05D003208 1.9e-29 133.7 246 42.7
FAN06G4297 Fragaria x ananassa HOM05D002932 ORTHO05D003208 1.9e-29 133.7 246 42.7
Psat1g106560 Pisum sativum HOM05D002932 ORTHO05D003208 1.9e-29 133.7 245 39.6
CANSAT21G2430 Cannabis sativa HOM05D002932 ORTHO05D003208 4.2e-29 132.5 242 40.9
Eucgr.K00306 Eucalyptus grandis HOM05D002932 ORTHO05D003208 5.5e-29 132.1 240 42.9
Atru.chr1.321 Acer truncatum HOM05D002932 ORTHO05D003208 7.2e-29 131.7 247 42.9
Hma1.2p1_0142F.1_g064300 Hydrangea macrophylla HOM05D002932 ORTHO05D003208 7.2e-29 131.7 231 42.9
Psat1g099360 Pisum sativum HOM05D002932 ORTHO05D003208 7.2e-29 131.7 249 41.4
Actinidia08604 Actinidia chinensis HOM05D002932 ORTHO05D003208 1.6e-28 130.6 226 38.9
Psat1g099320 Pisum sativum HOM05D002932 ORTHO05D003208 2.7e-28 129.8 239 41.0
TPR.G36623 Trifolium pratense HOM05D002932 ORTHO05D003208 2.7e-28 129.8 250 39.6
CSS0021611 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 1.8e-27 127.1 228 41.7
Lalb_Chr21g0305311 Lupinus albus HOM05D002932 ORTHO05D003208 3.0e-27 126.3 241 40.2
vmacro06597 Vaccinium macrocarpon HOM05D002932 ORTHO05D003208 6.8e-27 125.2 229 38.9
Rhsim09G0202600 Rhododendron simsii HOM05D002932 ORTHO05D003208 8.8e-27 124.8 232 39.7
Medtr6g034060 Medicago truncatula HOM05D002932 ORTHO05D003208 2.0e-26 123.6 247 40.5
Rhsim03G0196300 Rhododendron simsii HOM05D002932 ORTHO05D003208 2.6e-26 123.2 229 39.3
TPR.G36701 Trifolium pratense HOM05D002932 ORTHO05D003208 7.5e-26 121.7 251 38.2
Ah.07g206300 Amaranthus hybridus HOM05D002932 ORTHO05D003208 1.3e-25 120.9 230 39.6
Lalb_Chr02g0141341 Lupinus albus HOM05D002932 ORTHO05D003208 1.3e-25 120.9 224 40.6
Medtr6g034055 Medicago truncatula HOM05D002932 ORTHO05D003208 1.7e-25 120.6 238 38.2
Nn1g01736 Nelumbo nucifera HOM05D002932 ORTHO05D003208 4.9e-25 119.0 237 40.5
Eucgr.A02685 Eucalyptus grandis HOM05D002932 ORTHO05D003208 1.4e-24 117.5 235 41.3
Migut.F00261 Erythranthe guttata HOM05D002932 ORTHO05D003208 2.4e-24 116.7 254 39.0
Gohir.A11G013400 Gossypium hirsutum HOM05D002932 ORTHO05D003208 5.4e-24 115.5 238 36.1
Oeu037130.1 Olea europaea HOM05D002932 ORTHO05D003208 7.0e-24 115.2 229 39.3
Sed0018025 Sechium edule HOM05D002932 ORTHO05D003208 1.6e-23 114.0 235 37.4
Solyc03g007775.2 Solanum lycopersicum HOM05D002932 ORTHO05D003208 1.6e-23 114.0 240 36.7
SalBow4G2867 Salvia bowleyana HOM05D002932 ORTHO05D003208 2.0e-23 113.6 234 37.6
PGSC0003DMG400019964 Solanum tuberosum HOM05D002932 ORTHO05D003208 2.0e-23 113.6 229 37.1
Sopen03g003700 Solanum pennellii HOM05D002932 ORTHO05D003208 2.7e-23 113.2 240 35.8
ClCG01G000790 Citrullus lanatus HOM05D002932 ORTHO05D003208 3.5e-23 112.8 229 36.7
TAR629G3108 Trochodendron aralioides HOM05D002932 ORTHO05D003208 4.5e-23 112.5 233 37.8
CAN.G926.8 Capsicum annuum HOM05D002932 ORTHO05D003208 7.7e-23 111.7 240 36.7
Gohir.D11G013600 Gossypium hirsutum HOM05D002932 ORTHO05D003208 7.7e-23 111.7 237 35.9
Nn7g37319 Nelumbo nucifera HOM05D002932 ORTHO05D003208 7.7e-23 111.7 233 40.3
Oeu009283.1 Olea europaea HOM05D002932 ORTHO05D003208 2.9e-22 109.8 229 38.0
Ah.13g069610 Amaranthus hybridus HOM05D002932 ORTHO05D003208 1.5e-21 107.5 232 37.5
EL10Ac3g05377 Beta vulgaris HOM05D002932 ORTHO05D003208 1.5e-21 107.5 235 38.7
TAR374G1073 Trochodendron aralioides HOM05D002932 ORTHO05D003208 1.9e-21 107.1 236 38.6
HanXRQChr14g0462641 Helianthus annuus HOM05D002932 ORTHO05D003208 2.5e-21 106.7 217 35.5
CsaV3_5G000930 Cucumis sativus L. HOM05D002932 ORTHO05D003208 1.6e-20 104.0 235 37.4
MELO3C005851.2 Cucumis melo HOM05D002932 ORTHO05D003208 2.1e-20 103.6 231 34.6
TAR636G0499 Trochodendron aralioides HOM05D002932 ORTHO05D003208 3.6e-20 102.8 236 37.3
Medtr6g034050 Medicago truncatula HOM05D002932 ORTHO05D003208 4.7e-20 102.4 232 36.6
AUR62031454 Chenopodium quinoa HOM05D002932 ORTHO05D003208 1.4e-19 100.9 230 36.1
AUR62021078 Chenopodium quinoa HOM05D002932 ORTHO05D003208 1.8e-19 100.5 231 36.8
ECA238G1001 Erigeron canadensis HOM05D002932 ORTHO05D003208 2.6e-18 96.7 226 36.7
Sc19g0001040 Simmondsia chinensis HOM05D002932 ORTHO05D003208 3.4e-18 96.3 233 34.8
PGR142G0585 Punica granatum HOM05D002932 ORTHO05D003208 4.4e-18 95.9 230 38.3
HanXRQChr13g0392281 Helianthus annuus HOM05D002932 ORTHO05D003208 7.5e-18 95.1 234 37.2
Actinidia31853 Actinidia chinensis HOM05D002932 ORTHO05D003208 9.8e-18 94.7 156 41.7
CSS0045579 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 4.9e-17 92.4 171 40.9
Atru.ctg97_1.61 Acer truncatum HOM05D002932 ORTHO05D003208 4.1e-16 89.4 217 37.3
Gorai.007G013900 Gossypium raimondii HOM05D002932 ORTHO05D003208 1.2e-15 87.8 197 35.5
Peaxi162Scf00618g00627 Petunia axillaris HOM05D002932 ORTHO05D003208 1.2e-15 87.8 213 35.2
Peaxi162Scf00904g00468 Petunia axillaris HOM05D002932 ORTHO05D003208 1.6e-15 87.4 209 36.8
HanXRQChr07g0207101 Helianthus annuus HOM05D002932 ORTHO05D003208 4.6e-15 85.9 218 33.9
Dinv43873 Davidia involucrata HOM05D002932 ORTHO05D003208 5.9e-15 85.5 260 32.3
Lsat_1_v5_gn_2_133581 Lactuca sativa HOM05D002932 ORTHO05D003208 1.0e-14 84.7 195 36.9
Atru.chr5.594 Acer truncatum HOM05D002932 ORTHO05D003208 2.3e-14 83.6 224 29.9
CAN.G204.10 Capsicum annuum HOM05D002932 ORTHO05D003208 5.0e-14 82.4 221 32.1
Nitab4.5_0009102g0020 Nicotiana tabacum HOM05D002932 ORTHO05D003208 1.9e-13 80.5 192 34.4
CSS0001843 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 1.6e-12 77.4 96 52.1
MBI07_g44813_MAGBIO Magnolia biondii HOM05D002932 ORTHO05D003208 8.0e-12 75.1 227 28.6
Lsat_1_v5_gn_8_6240 Lactuca sativa HOM05D002932 ORTHO05D003208 6.8e-11 72.0 250 32.8
Manes.01G251500 Manihot esculenta HOM05D002932 ORTHO05D003208 8.9e-11 71.6 231 28.6
PGR031G1724 Punica granatum HOM05D002932 ORTHO05D003208 2.0e-10 70.5 232 32.8
Dinv32532 Davidia involucrata HOM05D002932 ORTHO05D003208 4.4e-10 69.3 280 26.8
PGSC0003DMG402000198 Solanum tuberosum HOM05D002932 ORTHO05D003208 5.8e-10 68.9 289 28.0
MSTRG.27064 Avicennia marina HOM05D002932 ORTHO05D003208 9.8e-10 68.2 155 36.1
vmacro10092 Vaccinium macrocarpon HOM05D002932 ORTHO05D003208 9.8e-10 68.2 96 44.8
Potri.014G091500 Populus trichocarpa HOM05D002932 ORTHO05D003208 1.7e-09 67.4 227 30.4
Gohir.D08G148800 Gossypium hirsutum HOM05D002932 ORTHO05D003208 2.2e-09 67.0 240 30.4
Gorai.004G154500 Gossypium raimondii HOM05D002932 ORTHO05D003208 2.2e-09 67.0 240 30.4
Lsat_1_v5_gn_4_34860 Lactuca sativa HOM05D002932 ORTHO05D003208 3.7e-09 66.2 238 29.8
Duzib138G0190 Durio zibethinus HOM05D002932 ORTHO05D003208 6.4e-09 65.5 235 27.2
Gohir.A08G127400 Gossypium hirsutum HOM05D002932 ORTHO05D003208 1.1e-08 64.7 240 30.0
CSS0002659 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 1.4e-08 64.3 250 29.2
Ciclev10023540m.g Citrus clementina HOM05D002932 ORTHO05D003208 2.4e-08 63.5 232 30.6
PSO135G1046 Papaver somniferum HOM05D002932 ORTHO05D003208 3.2e-08 63.2 266 27.8
PGSC0003DMG400028894 Solanum tuberosum HOM05D002932 ORTHO05D003208 4.1e-08 62.8 210 28.6
MSTRG.4831 Avicennia marina HOM05D002932 ORTHO05D003208 5.4e-08 62.4 273 29.3
Sabra14G0066400 Salix brachista HOM05D002932 ORTHO05D003208 5.4e-08 62.4 222 29.3
Actinidia20171 Actinidia chinensis HOM05D002932 ORTHO05D003208 7.0e-08 62.0 261 27.2
TPR.G37115 Trifolium pratense HOM05D002932 ORTHO05D003208 9.2e-08 61.6 239 26.4
PSO384G0628 Papaver somniferum HOM05D002932 ORTHO05D003208 1.2e-07 61.2 266 28.2
Medtr7g039720 Medicago truncatula HOM05D002932 ORTHO05D003208 2.0e-07 60.5 233 25.8
Aqoxy1G02826 Aquilegia oxysepala HOM05D002932 ORTHO05D003208 3.5e-07 59.7 233 30.0
Duzib133G1077 Durio zibethinus HOM05D002932 ORTHO05D003208 4.6e-07 59.3 238 26.9
PGSC0003DMG400019420 Solanum tuberosum HOM05D002932 ORTHO05D003208 6.0e-07 58.9 230 29.6
CSS0013096 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 7.8e-07 58.5 247 28.3
Peaxi162Scf00020g00174 Petunia axillaris HOM05D002932 ORTHO05D003208 7.8e-07 58.5 239 25.5
Sopen01g039030 Solanum pennellii HOM05D002932 ORTHO05D003208 1.0e-06 58.2 271 25.5
Solyc06g036460.4 Solanum lycopersicum HOM05D002932 ORTHO05D003208 1.3e-06 57.8 85 41.2
Sopen10g005630 Solanum pennellii HOM05D002932 ORTHO05D003208 1.3e-06 57.8 231 29.0
HanXRQChr16g0523761 Helianthus annuus HOM05D002932 ORTHO05D003208 1.7e-06 57.4 251 30.7
Medtr5g039840 Medicago truncatula HOM05D002932 ORTHO05D003208 1.7e-06 57.4 230 26.1
MSTRG.20870 Avicennia marina HOM05D002932 ORTHO05D003208 2.3e-06 57.0 273 27.1
CiPaw.02G036300 Carya illinoinensis HOM05D002932 ORTHO05D003208 2.3e-06 57.0 245 26.9
Lalb_Chr04g0256131 Lupinus albus HOM05D002932 ORTHO05D003208 3.0e-06 56.6 234 26.9


User provided reference genes

Program Settings