Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 7.0e-136 487.3 241 100.0
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 1.5e-85 320.1 289 60.2
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 1.5e-85 320.1 289 60.2
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 8.9e-83 310.8 281 58.7
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 4.4e-82 308.5 289 57.1
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 2.5e-77 292.7 252 61.5
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 7.3e-77 291.2 252 60.7
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 6.9e-59 231.5 283 46.3
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 5.8e-58 228.4 259 49.8
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 2.3e-54 216.5 225 54.2
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 9.0e-51 204.5 220 51.8
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 2.0e-50 203.4 291 43.0
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 5.8e-50 201.8 278 46.0
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 2.1e-47 193.4 239 49.0
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 2.4e-43 179.9 299 38.1
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 2.3e-38 163.3 304 35.9
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 2.3e-38 163.3 252 38.5
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 2.3e-38 163.3 306 35.6
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 8.7e-38 161.4 252 38.1
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 1.1e-37 161.0 302 34.8
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 2.5e-37 159.8 310 34.8
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 2.5e-37 159.8 252 38.1
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.5e-37 159.8 252 38.1
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 2.5e-37 159.8 300 37.3
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 4.3e-37 159.1 303 34.7
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 5.7e-37 158.7 303 34.0
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 9.7e-37 157.9 303 35.0
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 9.7e-37 157.9 252 37.7
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 1.3e-36 157.5 281 36.7
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 1.6e-36 157.1 254 38.6
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.6e-36 157.1 305 34.8
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 3.7e-36 156.0 252 37.3
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 3.7e-36 156.0 304 31.9
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 4.8e-36 155.6 312 33.3
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 4.8e-36 155.6 305 35.1
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 1.1e-35 154.5 295 36.3
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 1.4e-35 154.1 302 33.1
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 2.4e-35 153.3 279 38.4
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 3.1e-35 152.9 303 36.0
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 4.1e-35 152.5 272 36.4
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 5.3e-35 152.1 94 80.9
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 6.9e-35 151.8 306 35.6
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 6.9e-35 151.8 314 34.1
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 6.9e-35 151.8 301 34.2
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 9.0e-35 151.4 294 35.7
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 2.6e-34 149.8 295 34.2
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 4.5e-34 149.1 304 33.6
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 1.0e-33 147.9 301 32.6
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 2.9e-33 146.4 300 32.7
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 1.1e-32 144.4 233 38.6
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 1.4e-32 144.1 302 33.1
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 2.5e-32 143.3 293 33.4
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 5.5e-32 142.1 284 33.5
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 1.2e-31 141.0 293 32.8
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 1.6e-31 140.6 301 34.6
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 1.6e-31 140.6 309 33.7
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 2.1e-31 140.2 292 35.6
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 6.1e-31 138.7 306 33.0
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 1.8e-30 137.1 298 32.2
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 3.0e-30 136.3 302 30.8
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 3.9e-30 136.0 299 34.4
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 6.7e-30 135.2 295 32.2
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 1.1e-29 134.4 306 30.7
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 1.1e-29 134.4 296 30.7
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 1.1e-29 134.4 293 31.4
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 1.5e-29 134.0 306 33.3
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 1.5e-29 134.0 300 34.0
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 2.0e-29 133.7 171 45.6
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 3.3e-29 132.9 303 30.4
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 7.4e-29 131.7 296 32.4
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 1.3e-28 131.0 192 40.1
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 1.3e-28 131.0 303 30.7
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 1.3e-28 131.0 231 36.4
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 1.7e-28 130.6 300 33.7
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 1.7e-28 130.6 303 33.3
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 4.8e-28 129.0 264 34.1
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 6.3e-28 128.6 298 33.6
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 6.3e-28 128.6 301 32.2
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 1.1e-27 127.9 283 34.6
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 1.4e-27 127.5 299 33.4
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 4.1e-27 125.9 256 30.9
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 1.5e-26 124.0 251 31.5
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 2.2e-25 120.2 304 29.3
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 3.8e-25 119.4 304 29.6
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 1.9e-24 117.1 301 28.9
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 9.4e-24 114.8 302 30.8
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 1.0e-22 111.3 280 28.6
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.4e-22 110.9 296 31.1
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 3.1e-19 99.8 86 58.1
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 1.6e-18 97.4 86 57.0
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 1.7e-17 94.0 87 55.2
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 1.1e-16 91.3 71 62.0
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 3.2e-16 89.7 125 38.4
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 3.2e-16 89.7 86 52.3
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 5.5e-16 89.0 86 52.3
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 7.2e-16 88.6 87 50.6
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 9.4e-16 88.2 316 27.2
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 1.6e-15 87.4 86 50.0
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 1.8e-14 84.0 86 50.0
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 2.3e-14 83.6 70 57.1
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 1.5e-13 80.9 286 26.9
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 2.0e-13 80.5 196 31.6
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 2.0e-13 80.5 129 37.2
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 4.4e-13 79.3 100 44.0
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 4.4e-13 79.3 245 27.3
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 2.2e-12 77.0 75 49.3
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 6.3e-12 75.5 88 43.2
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 8.2e-12 75.1 256 26.2
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 9.1e-11 71.6 296 25.7
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 1.6e-10 70.9 165 29.1
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 2.0e-10 70.5 163 28.8
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 2.0e-10 70.5 124 33.9
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 5.9e-10 68.9 53 64.2
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 1.0e-09 68.2 117 37.6
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 1.7e-09 67.4 60 53.3
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 2.9e-09 66.6 156 28.2
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 5.0e-09 65.9 60 51.7
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 8.5e-09 65.1 56 53.6
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 2.5e-08 63.5 57 50.9
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 1.0e-06 58.2 86 37.2


User provided reference genes

Program Settings