Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g14050 Schrenkiella parvula HOM05D005963 ORTHO05D006869 0.0e+00 1889.4 969 100.0
BraA02t06276Z Brassica rapa HOM05D005963 ORTHO05D006869 0.0e+00 1610.1 971 85.4
A02p12120 Brassica napus HOM05D005963 ORTHO05D006869 0.0e+00 1608.6 971 85.3
AL8G26090 Arabidopsis lyrata HOM05D005963 ORTHO05D006869 0.0e+00 1600.5 978 84.6
BolC2t08150H Brassica oleracea HOM05D005963 ORTHO05D006869 0.0e+00 1600.5 971 86.7
Thhalv10015853m.g Eutrema salsugineum HOM05D005963 ORTHO05D006869 0.0e+00 1589.3 978 84.4
C02p20220 Brassica napus HOM05D005963 ORTHO05D006869 0.0e+00 1588.5 971 86.4
A10p09630 Brassica napus HOM05D005963 ORTHO05D006869 0.0e+00 1587.4 971 84.0
BraA10t43044Z Brassica rapa HOM05D005963 ORTHO05D006869 0.0e+00 1587.4 971 84.0
BolC9t56999H Brassica oleracea HOM05D005963 ORTHO05D006869 0.0e+00 1577.8 971 83.5
AT5G51800 Arabidopsis thaliana HOM05D005963 ORTHO05D006869 0.0e+00 1575.5 979 83.9
Carub.0008s1182 Capsella rubella HOM05D005963 ORTHO05D006869 0.0e+00 1575.5 983 84.3
CARHR264680 Cardamine hirsuta HOM05D005963 ORTHO05D006869 0.0e+00 1552.7 979 82.4
BcaB08g35527 Brassica carinata HOM05D005963 ORTHO05D006869 0.0e+00 1547.3 971 83.8
BcaC04g20635 Brassica carinata HOM05D005963 ORTHO05D006869 0.0e+00 1524.6 971 81.6
BcaC03g14575 Brassica carinata HOM05D005963 ORTHO05D006869 0.0e+00 1521.5 971 83.7
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 3.8e-310 1068.1 860 64.4
C09p41240 Brassica napus HOM05D005963 ORTHO05D006869 4.0e-299 1031.6 668 81.1
Duzib205G1443 Durio zibethinus HOM05D005963 ORTHO05D006869 1.1e-275 953.7 976 53.6
CSS0028871 Camellia sinensis var. sinensis HOM05D005963 ORTHO05D006869 5.4e-272 941.4 982 53.3
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 3.5e-271 938.7 970 54.2
CiPaw.03G099400 Carya illinoinensis HOM05D005963 ORTHO05D006869 8.7e-270 934.1 973 55.6
Thecc.03G166100 Theobroma cacao HOM05D005963 ORTHO05D006869 1.4e-267 926.8 1030 51.9
Actinidia13537 Actinidia chinensis HOM05D005963 ORTHO05D006869 1.2e-266 923.7 937 53.7
Cpa.g.sc4.183 Carica papaya HOM05D005963 ORTHO05D006869 7.6e-266 921.0 1064 51.7
Potri.012G132300 Populus trichocarpa HOM05D005963 ORTHO05D006869 4.9e-265 918.3 1032 50.9
Actinidia25056 Actinidia chinensis HOM05D005963 ORTHO05D006869 1.4e-264 916.8 943 54.2
Rhsim03G0174100 Rhododendron simsii HOM05D005963 ORTHO05D006869 3.2e-264 915.6 995 52.3
Hma1.2p1_0488F.1_g163860 Hydrangea macrophylla HOM05D005963 ORTHO05D006869 1.2e-263 913.7 1014 53.1
Prupe.2G286400 Prunus persica HOM05D005963 ORTHO05D006869 1.6e-263 913.3 1046 50.0
FAN06G4856 Fragaria x ananassa HOM05D005963 ORTHO05D006869 7.8e-263 911.0 956 52.2
FAN03G0518 Fragaria x ananassa HOM05D005963 ORTHO05D006869 3.9e-262 908.7 956 51.9
FAN06G2356 Fragaria x ananassa HOM05D005963 ORTHO05D006869 8.7e-262 907.5 956 52.1
QL12p038851 Quercus lobata HOM05D005963 ORTHO05D006869 8.7e-262 907.5 1023 51.8
Ciclev10004233m.g Citrus clementina HOM05D005963 ORTHO05D006869 1.1e-261 907.1 1019 51.1
FvH4_7g28640 Fragaria vesca HOM05D005963 ORTHO05D006869 4.3e-261 905.2 956 52.0
Peaxi162Scf00192g00613 Petunia axillaris HOM05D005963 ORTHO05D006869 4.3e-261 905.2 943 53.2
Manes.06G140900 Manihot esculenta HOM05D005963 ORTHO05D006869 5.6e-261 904.8 992 53.4
TWI14G0479 Tripterygium wilfordii HOM05D005963 ORTHO05D006869 4.8e-260 901.7 995 51.9
Duzib068G1175 Durio zibethinus HOM05D005963 ORTHO05D006869 8.1e-260 901.0 1042 50.4
Oeu030146.1 Olea europaea HOM05D005963 ORTHO05D006869 2.4e-259 899.4 990 52.7
Oeu030148.1 Olea europaea HOM05D005963 ORTHO05D006869 4.0e-259 898.7 990 52.6
FAN01G2646 Fragaria x ananassa HOM05D005963 ORTHO05D006869 2.0e-258 896.3 957 51.7
PGR142G0011 Punica granatum HOM05D005963 ORTHO05D006869 9.9e-258 894.0 977 51.8
MD01G1192000 Malus domestica HOM05D005963 ORTHO05D006869 1.3e-257 893.6 999 51.2
Haze_13797 Corylus avellana HOM05D005963 ORTHO05D006869 2.2e-257 892.9 957 52.4
Solyc03g006900.2 Solanum lycopersicum HOM05D005963 ORTHO05D006869 3.8e-257 892.1 1015 50.3
Eucgr.K00183 Eucalyptus grandis HOM05D005963 ORTHO05D006869 1.4e-256 890.2 967 53.3
Aqoxy7G00515 Aquilegia oxysepala HOM05D005963 ORTHO05D006869 2.4e-256 889.4 939 53.1
RcHm_v2.0_Chr1g0376121 Rosa chinensis HOM05D005963 ORTHO05D006869 7.1e-256 887.9 1028 51.1
Sopen03g002900 Solanum pennellii HOM05D005963 ORTHO05D006869 9.3e-256 887.5 1019 50.8
MD00G1003400 Malus domestica HOM05D005963 ORTHO05D006869 1.6e-255 886.7 994 52.0
Nitab4.5_0000371g0030 Nicotiana tabacum HOM05D005963 ORTHO05D006869 1.6e-255 886.7 966 53.1
Nitab4.5_0000124g0020 Nicotiana tabacum HOM05D005963 ORTHO05D006869 2.1e-255 886.3 967 52.6
Nn6g34339 Nelumbo nucifera HOM05D005963 ORTHO05D006869 4.6e-255 885.2 995 51.1
CAN.G1257.1 Capsicum annuum HOM05D005963 ORTHO05D006869 6.0e-255 884.8 1036 49.7
CiPaw.04G064800 Carya illinoinensis HOM05D005963 ORTHO05D006869 1.1e-253 880.6 979 51.1
TAR374G1343 Trochodendron aralioides HOM05D005963 ORTHO05D006869 7.4e-253 877.9 976 52.3
DCAR_018136 Daucus carota HOM05D005963 ORTHO05D006869 1.3e-249 867.1 966 48.9
Phvul.004G124000 Phaseolus vulgaris HOM05D005963 ORTHO05D006869 4.9e-249 865.1 973 51.8
SHI13839 Sapria himalayana HOM05D005963 ORTHO05D006869 1.4e-248 863.6 1041 49.7
Lj2g0022710 Lotus japonicus HOM05D005963 ORTHO05D006869 5.5e-248 861.7 868 53.7
Gohir.A12G262600 Gossypium hirsutum HOM05D005963 ORTHO05D006869 9.3e-248 860.9 849 53.8
Gorai.008G282200 Gossypium raimondii HOM05D005963 ORTHO05D006869 4.6e-247 858.6 926 51.3
VMungo0464G1720 Vigna mungo HOM05D005963 ORTHO05D006869 4.6e-247 858.6 969 49.8
Sabra12G0099600 Salix brachista HOM05D005963 ORTHO05D006869 2.3e-246 856.3 1023 48.8
Gohir.D12G263300 Gossypium hirsutum HOM05D005963 ORTHO05D006869 3.9e-246 855.5 926 51.2
arahy.Tifrunner.gnm1.ann1.G2RQNR Arachis hypogaea HOM05D005963 ORTHO05D006869 8.7e-246 854.4 878 52.3
arahy.Tifrunner.gnm1.ann1.R4K09I Arachis hypogaea HOM05D005963 ORTHO05D006869 3.3e-245 852.4 880 52.0
ECA232G0907 Erigeron canadensis HOM05D005963 ORTHO05D006869 3.3e-245 852.4 984 51.6
Lsat_1_v5_gn_9_53261 Lactuca sativa HOM05D005963 ORTHO05D006869 5.6e-245 851.7 1057 49.7
FAN10G3242 Fragaria x ananassa HOM05D005963 ORTHO05D006869 1.3e-241 840.5 1010 48.6
HanXRQChr15g0486261 Helianthus annuus HOM05D005963 ORTHO05D006869 1.3e-241 840.5 1029 49.5
Glyma.09G149700 Glycine max HOM05D005963 ORTHO05D006869 2.2e-241 839.7 973 52.4
Medtr0007s0220 Medicago truncatula HOM05D005963 ORTHO05D006869 1.0e-238 830.9 968 48.9
HanXRQChr14g0433491 Helianthus annuus HOM05D005963 ORTHO05D006869 1.3e-238 830.5 949 50.3
TPR.G26590 Trifolium pratense HOM05D005963 ORTHO05D006869 3.0e-238 829.3 973 49.1
Lalb_Chr19g0131211 Lupinus albus HOM05D005963 ORTHO05D006869 8.2e-236 821.2 1031 49.7
Lj8C34G2 Lonicera japonica HOM05D005963 ORTHO05D006869 1.0e-233 814.3 961 49.5
Sed0018627 Sechium edule HOM05D005963 ORTHO05D006869 1.3e-233 813.9 998 49.7
Psat1g106960 Pisum sativum HOM05D005963 ORTHO05D006869 2.2e-233 813.1 871 51.2
PSO782G2761 Papaver somniferum HOM05D005963 ORTHO05D006869 9.7e-229 797.7 884 51.6
MELO3C006856.2 Cucumis melo HOM05D005963 ORTHO05D006869 8.2e-228 794.7 1033 44.7
COL.COLO4_14220 Corchorus olitorius HOM05D005963 ORTHO05D006869 2.4e-227 793.1 857 51.8
PSO478G0110 Papaver somniferum HOM05D005963 ORTHO05D006869 7.7e-226 788.1 951 50.6
Dinv35132 Davidia involucrata HOM05D005963 ORTHO05D006869 4.2e-224 782.3 968 48.9
EL10Ac3g05753 Beta vulgaris HOM05D005963 ORTHO05D006869 1.2e-223 780.8 865 50.4
ClCG05G007670 Citrullus lanatus HOM05D005963 ORTHO05D006869 2.6e-221 773.1 1016 46.0
Dinv28513 Davidia involucrata HOM05D005963 ORTHO05D006869 5.7e-221 771.9 854 49.9
vmacro22547 Vaccinium macrocarpon HOM05D005963 ORTHO05D006869 5.7e-221 771.9 859 49.5
CsaV3_3G016590 Cucumis sativus L. HOM05D005963 ORTHO05D006869 1.8e-219 766.9 1030 44.2
EL10Ac7g16401 Beta vulgaris HOM05D005963 ORTHO05D006869 6.7e-214 748.4 919 46.8
Gorai.001G047400 Gossypium raimondii HOM05D005963 ORTHO05D006869 1.4e-211 740.7 1030 44.5
Ah.13g067680 Amaranthus hybridus HOM05D005963 ORTHO05D006869 6.5e-209 731.9 1007 46.5
SEGI_31852 Sequoiadendron giganteum HOM05D005963 ORTHO05D006869 8.5e-209 731.5 850 47.2
FAN03G0902 Fragaria x ananassa HOM05D005963 ORTHO05D006869 4.7e-207 725.7 800 50.5
Gohir.A07G040200 Gossypium hirsutum HOM05D005963 ORTHO05D006869 2.0e-205 720.3 608 59.9
AUR62016071 Chenopodium quinoa HOM05D005963 ORTHO05D006869 4.7e-199 699.1 803 48.1
AUR62021279 Chenopodium quinoa HOM05D005963 ORTHO05D006869 3.8e-193 679.5 780 48.7
Sc25g0000220 Simmondsia chinensis HOM05D005963 ORTHO05D006869 1.5e-192 677.6 976 42.2
Cc02_g03640 Coffea canephora HOM05D005963 ORTHO05D006869 1.1e-176 624.8 556 57.7
Gohir.D07G044301 Gossypium hirsutum HOM05D005963 ORTHO05D006869 5.6e-176 622.5 538 58.0
CDE08G0260 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 4.0e-174 616.3 712 47.5
PGSC0003DMG400007557 Solanum tuberosum HOM05D005963 ORTHO05D006869 5.8e-173 612.5 552 57.4
Hund04676 Selenicereus undatus HOM05D005963 ORTHO05D006869 3.1e-166 590.1 616 50.8
Aa31LG3G8240 Aethionema arabicum HOM05D005963 ORTHO05D006869 4.4e-157 559.7 401 68.6
ATR0661G117 Amborella trichopoda HOM05D005963 ORTHO05D006869 4.3e-120 436.8 482 47.5
Atru.chr1.580 Acer truncatum HOM05D005963 ORTHO05D006869 1.2e-117 428.7 399 56.6
Glyma.16G201100 Glycine max HOM05D005963 ORTHO05D006869 1.8e-89 335.1 476 49.8
ATR0661G452 Amborella trichopoda HOM05D005963 ORTHO05D006869 2.4e-70 271.6 502 39.4
Atru.chr1.581 Acer truncatum HOM05D005963 ORTHO05D006869 3.6e-66 257.7 412 47.6
PGSC0003DMG400007558 Solanum tuberosum HOM05D005963 ORTHO05D006869 5.2e-49 200.7 307 37.1
Pp3c2_90 Physcomitrium patens HOM05D005963 ORTHO05D006869 3.2e-46 191.4 463 30.7
Pp3c26_6160 Physcomitrium patens HOM05D005963 ORTHO05D006869 3.9e-44 184.5 463 30.2
Pp3c26_6250 Physcomitrium patens HOM05D005963 ORTHO05D006869 3.9e-44 184.5 463 30.2
MBI05_g12587_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 8.6e-44 183.3 157 52.2
Pp3c18_1570 Physcomitrium patens HOM05D005963 ORTHO05D006869 5.6e-43 180.6 416 30.5
SMO174G0009 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 4.6e-37 161.0 480 29.4
Ca_05417_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 8.7e-36 156.8 118 65.3
Ca_30119_v3 Cicer arietinum L. HOM05D005963 ORTHO05D006869 2.5e-35 155.2 157 55.4
MBI05_g12586_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 2.4e-30 138.7 196 43.4
SMO276G0013 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 2.1e-29 135.6 325 30.5
SMO358G0565 Selaginella moellendorffii HOM05D001046 ORTHO05D007174 1.7e-28 132.5 395 29.1
SMO195G0003 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 2.1e-21 109.0 481 26.4
SMO116G0123 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 2.7e-21 108.6 482 26.6
SMO268G0015 Selaginella moellendorffii HOM05D005963 ORTHO05D006869 7.6e-16 90.5 148 33.8
MBI05_g12588_MAGBIO Magnolia biondii HOM05D005963 ORTHO05D006869 7.9e-13 80.5 60 70.0
Cre02.g095117 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 3.3e-11 75.1 351 24.5
CBR_g38396 Chara braunii HOM05D002537 ORTHO05D002751 3.1e-09 68.6 141 29.1
Mapoly0001s0312 Marchantia polymorpha HOM05D029505 ORTHO05D006869 2.0e-08 65.9 161 31.1
Cre01.g041800 Chlamydomonas reinhardtii HOM05D010267 ORTHO05D010759 5.0e-07 61.2 308 23.7
FAN17G1050 Fragaria x ananassa HOM05D002537 ORTHO05D002751 5.0e-07 61.2 170 26.5
CDE08G0941 Ceratophyllum demersum HOM05D005963 ORTHO05D006869 1.1e-06 60.1 92 42.4
CSS0009758 Camellia sinensis var. sinensis HOM05D002537 ORTHO05D002751 1.4e-06 59.7 190 24.2
Oeu000477.1 Olea europaea HOM05D003725 ORTHO05D004294 1.4e-06 59.7 121 30.6
FvH4_4g22720 Fragaria vesca HOM05D002537 ORTHO05D002751 3.2e-06 58.5 174 25.9
FAN12G1604 Fragaria x ananassa HOM05D002537 ORTHO05D002751 3.2e-06 58.5 174 25.9
Mapoly0229s0008 Marchantia polymorpha HOM05D002537 ORTHO05D002751 4.2e-06 58.2 153 30.1
Sopen02g009780 Solanum pennellii HOM05D003725 ORTHO05D004294 4.2e-06 58.2 122 30.3
Thecc.03G139900 Theobroma cacao HOM05D002537 ORTHO05D002751 4.2e-06 58.2 72 34.7
Zm00001eb421380 Zea mays HOM05D002537 ORTHO05D002751 4.2e-06 58.2 118 34.7
Carub.0004s1736 Capsella rubella HOM05D003725 ORTHO05D004294 5.5e-06 57.8 331 23.6
Mapoly0065s0047 Marchantia polymorpha HOM05D003725 ORTHO05D004294 5.5e-06 57.8 126 30.2
FAN07G0908 Fragaria x ananassa HOM05D002537 ORTHO05D002751 9.3e-06 57.0 170 25.9
Nn3g16283 Nelumbo nucifera HOM05D002537 ORTHO05D002751 9.3e-06 57.0 97 33.0
Nn4g24804 Nelumbo nucifera HOM05D003725 ORTHO05D004294 9.3e-06 57.0 142 26.1
Pp3c12_22800 Physcomitrium patens HOM05D002537 ORTHO05D002751 9.3e-06 57.0 115 27.0
SMO351G0173 Selaginella moellendorffii HOM05D002537 ORTHO05D002751 9.3e-06 57.0 76 39.5
Zm00001eb084860 Zea mays HOM05D002537 ORTHO05D002751 9.3e-06 57.0 72 37.5


User provided reference genes

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