Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 8.5e-105 383.6 188 100.0
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 7.9e-95 350.5 188 89.4
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 2.0e-93 345.9 188 90.4
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 5.7e-93 344.4 188 87.8
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 2.8e-92 342.0 188 87.8
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 1.4e-91 339.7 189 87.8
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 2.0e-90 335.9 189 86.8
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 3.4e-90 335.1 188 88.8
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 2.2e-89 332.4 188 85.6
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 2.5e-88 328.9 188 85.6
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 4.2e-88 328.2 188 87.8
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 1.6e-87 326.2 188 85.6
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 2.1e-87 325.9 189 86.8
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 1.4e-86 323.2 197 84.8
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 2.0e-85 319.3 195 84.1
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 1.3e-81 306.6 188 76.6
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 6.3e-76 287.7 205 70.7
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 1.2e-61 240.4 189 61.9
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 1.2e-61 240.4 189 65.1
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 7.5e-61 237.7 194 62.9
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 2.2e-60 236.1 185 62.7
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 8.3e-60 234.2 186 64.5
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 8.3e-60 234.2 184 62.5
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.8e-59 233.0 185 61.6
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 2.4e-59 232.6 185 62.7
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 2.4e-59 232.6 186 60.8
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 4.1e-59 231.9 185 61.6
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.2e-58 230.3 185 61.1
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 1.2e-58 230.3 185 62.7
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 2.0e-58 229.6 186 61.8
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 2.0e-58 229.6 185 60.0
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 2.7e-58 229.2 188 62.8
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 2.7e-58 229.2 186 60.2
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.5e-58 228.8 185 61.1
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 7.8e-58 227.6 189 59.3
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 1.0e-57 227.3 185 60.5
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 1.3e-57 226.9 114 93.9
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.3e-57 226.9 185 58.9
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 2.9e-57 225.7 185 59.5
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 3.8e-57 225.3 185 58.9
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 3.8e-57 225.3 191 61.3
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 5.0e-57 224.9 143 72.0
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 1.5e-56 223.4 192 56.8
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 2.5e-56 222.6 185 57.8
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 2.5e-56 222.6 141 68.8
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 4.3e-56 221.9 186 62.9
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 9.5e-56 220.7 221 50.2
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 9.5e-56 220.7 141 70.2
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 2.1e-55 219.5 143 69.9
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 2.1e-55 219.5 187 59.9
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 6.1e-55 218.0 176 61.9
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 6.1e-55 218.0 185 59.5
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 8.0e-55 217.6 141 68.1
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 1.4e-54 216.9 185 58.9
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 1.4e-54 216.9 128 77.3
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 1.8e-54 216.5 141 70.9
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 2.3e-54 216.1 185 57.8
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 2.3e-54 216.1 188 56.4
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 3.0e-54 215.7 128 76.6
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 5.2e-54 214.9 151 65.6
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 5.2e-54 214.9 151 66.9
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 6.8e-54 214.5 185 57.8
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 6.8e-54 214.5 196 57.1
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 8.9e-54 214.2 141 70.2
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 1.2e-53 213.8 129 74.4
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 2.0e-53 213.0 142 69.0
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 2.6e-53 212.6 185 56.8
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 2.6e-53 212.6 189 57.7
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 3.4e-53 212.2 185 56.2
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 3.4e-53 212.2 183 56.3
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 4.4e-53 211.8 187 56.1
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 5.7e-53 211.5 185 58.4
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 5.7e-53 211.5 186 56.5
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 7.5e-53 211.1 153 61.4
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 7.5e-53 211.1 189 57.7
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 9.8e-53 210.7 137 68.6
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.7e-52 209.9 130 73.8
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 1.7e-52 209.9 185 57.8
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 2.2e-52 209.5 138 68.8
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 2.9e-52 209.1 185 54.6
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 3.7e-52 208.8 130 73.1
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 4.9e-52 208.4 130 71.5
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 4.9e-52 208.4 182 57.7
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 6.4e-52 208.0 169 59.8
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 8.3e-52 207.6 130 72.3
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 8.3e-52 207.6 187 56.1
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 8.3e-52 207.6 186 54.8
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 8.3e-52 207.6 191 57.6
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 1.1e-51 207.2 187 54.0
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 1.4e-51 206.8 153 62.7
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 1.4e-51 206.8 129 73.6
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 1.8e-51 206.5 185 56.2
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 9.2e-51 204.1 189 57.1
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 2.0e-50 203.0 193 54.4
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 2.7e-50 202.6 189 55.6
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.7e-50 202.6 189 55.0
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 3.5e-50 202.2 150 62.7
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 4.6e-50 201.8 133 71.4
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 5.9e-50 201.4 189 55.6
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 7.8e-50 201.1 189 54.0
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 7.8e-50 201.1 187 55.1
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.0e-49 200.7 189 55.0
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 1.3e-49 200.3 185 55.1
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 1.3e-49 200.3 185 54.1
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.7e-49 199.9 131 71.0
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 8.6e-49 197.6 139 67.6
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 8.6e-49 197.6 195 55.4
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 2.5e-48 196.1 151 62.9
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 5.6e-48 194.9 186 53.2
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 4.7e-47 191.8 230 49.1
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 4.7e-47 191.8 129 69.0
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 4.7e-47 191.8 163 58.3
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 1.1e-46 190.7 167 59.3
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 1.4e-46 190.3 150 62.7
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 1.5e-45 186.8 115 69.6
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 1.5e-45 186.8 190 51.6
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 1.7e-44 183.3 129 66.7
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 2.2e-44 183.0 254 43.3
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 5.4e-43 178.3 159 56.0
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 7.0e-43 177.9 128 68.0
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.6e-42 176.8 159 56.6
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 8.6e-41 171.0 278 39.6
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 1.6e-39 166.8 116 64.7
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 2.2e-36 156.4 116 61.2
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 3.2e-35 152.5 124 55.6
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 1.3e-33 147.1 72 91.7
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.3e-33 147.1 87 72.4
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 3.0e-33 146.0 125 50.4
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 3.1e-30 136.0 90 70.0
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 3.4e-29 132.5 116 53.4
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 3.4e-29 132.5 130 56.2
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 7.6e-29 131.3 86 68.6
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 9.9e-29 131.0 80 77.5
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 3.5e-26 122.5 79 65.8
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 2.8e-23 112.8 65 73.8
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 2.8e-23 112.8 72 66.7
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.4e-22 109.8 93 62.4
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 1.2e-21 107.5 103 45.6
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 8.4e-20 101.3 132 36.4
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 7.1e-19 98.2 119 47.9
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 1.3e-17 94.0 62 64.5
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 1.4e-11 73.9 92 44.6
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 9.6e-08 61.2 35 74.3
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 1.1e-06 57.8 52 48.1


User provided reference genes

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