Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g11910 Schrenkiella parvula HOM05D007751 ORTHO05D009813 5.3e-85 317.8 175 100.0
Thhalv10015309m.g Eutrema salsugineum HOM05D007751 ORTHO05D009813 1.4e-64 250.0 175 80.0
C04p47120 Brassica napus HOM05D007751 ORTHO05D009813 5.7e-63 244.6 175 76.6
BolC4t26306H Brassica oleracea HOM05D007751 ORTHO05D009813 9.7e-63 243.8 175 76.0
A04p13370 Brassica napus HOM05D007751 ORTHO05D009813 1.3e-62 243.4 175 76.0
BraA04t16992Z Brassica rapa HOM05D007751 ORTHO05D009813 6.3e-62 241.1 175 75.4
AT5G50040 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 3.5e-52 208.8 176 69.9
CARHR258610 Cardamine hirsuta HOM05D007751 ORTHO05D009813 7.7e-52 207.6 176 68.2
Carub.0008s0995 Capsella rubella HOM05D007751 ORTHO05D009813 1.7e-51 206.5 178 69.7
C03p33340 Brassica napus HOM05D007751 ORTHO05D009813 1.9e-50 203.0 172 66.3
BcaC01g04833 Brassica carinata HOM05D007751 ORTHO05D009813 9.4e-50 200.7 172 65.7
BraA03t10746Z Brassica rapa HOM05D007751 ORTHO05D009813 9.4e-50 200.7 169 65.1
AL8G24040 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 1.6e-49 199.9 180 68.3
CARHR257930 Cardamine hirsuta HOM05D007751 ORTHO05D009813 4.7e-49 198.4 173 67.6
BcaB01g04307 Brassica carinata HOM05D007751 ORTHO05D009813 6.1e-49 198.0 169 63.9
BcaC01g06316 Brassica carinata HOM05D007751 ORTHO05D009813 6.1e-49 198.0 169 63.9
BolC3t14109H Brassica oleracea HOM05D007751 ORTHO05D009813 6.1e-49 198.0 169 63.9
Sp6g11880 Schrenkiella parvula HOM05D007751 ORTHO05D009813 6.1e-49 198.0 172 65.1
C03p16960 Brassica napus HOM05D007751 ORTHO05D009813 8.0e-49 197.6 169 63.9
A03p14510 Brassica napus HOM05D007751 ORTHO05D009813 1.4e-48 196.8 169 63.9
Carub.0008s1007 Capsella rubella HOM05D007751 ORTHO05D009813 3.4e-47 192.2 179 61.5
Carub.0008s0996 Capsella rubella HOM05D007751 ORTHO05D009813 1.3e-46 190.3 178 62.4
Carub.0008s1000 Capsella rubella HOM05D007751 ORTHO05D009813 4.1e-45 185.3 177 62.1
AL8G24070 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 2.7e-44 182.6 174 61.5
Sp6g11920 Schrenkiella parvula HOM05D007751 ORTHO05D009813 2.1e-41 172.9 179 57.0
Carub.0008s0998 Capsella rubella HOM05D007751 ORTHO05D009813 1.0e-40 170.6 178 59.6
AL8G24030 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 1.8e-40 169.9 176 59.1
AT5G50030 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 3.0e-40 169.1 175 58.3
Thhalv10014776m.g Eutrema salsugineum HOM05D007751 ORTHO05D009813 3.0e-40 169.1 176 55.7
Carub.0008s0997 Capsella rubella HOM05D007751 ORTHO05D009813 1.5e-39 166.8 176 56.2
CARHR258630 Cardamine hirsuta HOM05D007751 ORTHO05D009813 1.5e-39 166.8 176 56.8
Carub.0008s0999 Capsella rubella HOM05D007751 ORTHO05D009813 2.6e-39 166.0 170 58.8
Carub.0008s1001 Capsella rubella HOM05D007751 ORTHO05D009813 1.1e-37 160.6 180 53.3
A10p08560 Brassica napus HOM05D007751 ORTHO05D009813 1.4e-37 160.2 177 54.2
BraSC37t46147Z Brassica rapa HOM05D007751 ORTHO05D009813 2.4e-37 159.5 177 54.2
Carub.0008s0994 Capsella rubella HOM05D007751 ORTHO05D009813 4.1e-37 158.7 174 55.7
AT5G50050 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 1.2e-36 157.1 173 56.1
Aa31sc47G40 Aethionema arabicum HOM05D007751 ORTHO05D009813 4.6e-36 155.2 174 52.9
Sp6g11860 Schrenkiella parvula HOM05D007751 ORTHO05D009813 4.6e-36 155.2 176 53.4
AL8G24060 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 7.3e-34 147.9 184 51.6
AL8G24050 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 2.8e-33 146.0 167 51.5
AT5G50070 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 2.3e-32 142.9 184 51.6
CARHR284460 Cardamine hirsuta HOM05D007751 ORTHO05D009813 2.0e-31 139.8 182 47.8
Carub.0002s0822 Capsella rubella HOM05D007751 ORTHO05D009813 2.6e-31 139.4 181 48.1
BolC9t56709H Brassica oleracea HOM05D007751 ORTHO05D009813 7.5e-31 137.9 163 51.5
Aa31sc47G80 Aethionema arabicum HOM05D007751 ORTHO05D009813 2.9e-30 136.0 155 50.3
AT5G50060 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 4.9e-30 135.2 167 47.9
AT1G54980 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 8.3e-30 134.4 170 50.6
Carub.0008s1002 Capsella rubella HOM05D007751 ORTHO05D009813 2.4e-29 132.9 184 49.5
AT4G24640 Arabidopsis thaliana HOM05D007751 ORTHO05D009813 1.3e-27 127.1 176 46.6
AL1G65530 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 2.3e-27 126.3 141 51.1
Carub.0007s1642 Capsella rubella HOM05D007751 ORTHO05D009813 3.0e-27 125.9 176 44.9
AL7G28560 Arabidopsis lyrata HOM05D007751 ORTHO05D009813 5.0e-27 125.2 176 45.5
Thhalv10026329m.g Eutrema salsugineum HOM05D007751 ORTHO05D009813 7.3e-26 121.3 176 44.3
THA.LOC104799810 Tarenaya hassleriana HOM05D007751 ORTHO05D009813 7.3e-26 121.3 178 43.3
BraA02t06621Z Brassica rapa HOM05D007751 ORTHO05D009813 9.5e-26 120.9 177 46.3
Aa31sc47G50 Aethionema arabicum HOM05D007751 ORTHO05D009813 1.2e-25 120.6 182 42.3
C02p25780 Brassica napus HOM05D007751 ORTHO05D009813 4.0e-24 115.5 177 45.2
Sp7g22630 Schrenkiella parvula HOM05D007751 ORTHO05D009813 8.9e-24 114.4 169 43.2
BcaNung04957 Brassica carinata HOM05D007751 ORTHO05D009813 1.3e-22 110.5 176 41.5
THA.LOC104800050 Tarenaya hassleriana HOM05D007751 ORTHO05D009813 1.3e-22 110.5 175 40.6
Carub.0002s0821 Capsella rubella HOM05D007751 ORTHO05D009813 2.2e-22 109.8 175 44.0
BolC2t08647H Brassica oleracea HOM05D007751 ORTHO05D009813 6.4e-22 108.2 150 45.3
C09p38520 Brassica napus HOM05D007751 ORTHO05D009813 8.3e-22 107.8 137 47.4
CARHR232030 Cardamine hirsuta HOM05D007751 ORTHO05D009813 8.3e-22 107.8 176 38.6
Carub.0008s1006 Capsella rubella HOM05D007751 ORTHO05D009813 5.4e-21 105.1 185 42.2
BolC1t01925H Brassica oleracea HOM05D007751 ORTHO05D009813 2.7e-20 102.8 176 41.5
BcaC09g50845 Brassica carinata HOM05D007751 ORTHO05D009813 3.5e-20 102.4 176 40.9
BolC4t26309H Brassica oleracea HOM05D007751 ORTHO05D009813 7.8e-20 101.3 74 77.0
C01p19970 Brassica napus HOM05D007751 ORTHO05D009813 1.0e-19 100.9 176 40.9
Carub.0008s1005 Capsella rubella HOM05D007751 ORTHO05D009813 1.3e-19 100.5 185 40.0
BraA01t01533Z Brassica rapa HOM05D007751 ORTHO05D009813 2.3e-19 99.8 176 40.3
A01p15990 Brassica napus HOM05D007751 ORTHO05D009813 1.1e-18 97.4 176 39.8
BraA01t01929Z Brassica rapa HOM05D007751 ORTHO05D009813 7.3e-18 94.7 182 37.4
Carub.0002s0820 Capsella rubella HOM05D007751 ORTHO05D009813 7.3e-18 94.7 175 36.6
A01p20050 Brassica napus HOM05D007751 ORTHO05D009813 1.2e-17 94.0 182 37.4
CARHR258620 Cardamine hirsuta HOM05D007751 ORTHO05D009813 2.8e-17 92.8 179 38.0
BolC2t08679H Brassica oleracea HOM05D007751 ORTHO05D009813 3.6e-17 92.4 182 37.4
C02p26100 Brassica napus HOM05D007751 ORTHO05D009813 1.1e-16 90.9 182 36.8
Aa31LG4G9710 Aethionema arabicum HOM05D007751 ORTHO05D009813 1.4e-16 90.5 115 44.3
A02p15670 Brassica napus HOM05D007751 ORTHO05D009813 1.8e-16 90.1 182 36.8
BraA02t06629Z Brassica rapa HOM05D007751 ORTHO05D009813 1.8e-16 90.1 182 36.8
BcaC03g15060 Brassica carinata HOM05D007751 ORTHO05D009813 3.4e-15 85.9 155 36.8
BcaC07g38163 Brassica carinata HOM05D007751 ORTHO05D009813 6.4e-14 81.6 105 45.7
BcaB01g02924 Brassica carinata HOM05D007751 ORTHO05D009813 3.2e-13 79.3 59 67.8
A08p21410 Brassica napus HOM05D007751 ORTHO05D009813 7.1e-13 78.2 108 41.7
A02p15600 Brassica napus HOM05D007751 ORTHO05D009813 2.3e-11 73.2 126 40.5
BolC8t48582H Brassica oleracea HOM05D007751 ORTHO05D009813 3.9e-11 72.4 108 43.5
Carub.0008s1003 Capsella rubella HOM05D007751 ORTHO05D009813 4.3e-10 68.9 187 33.7
Prupe.8G038100 Prunus persica HOM05D004894 ORTHO05D005689 1.4e-08 63.9 128 32.8
MD10G1032700 Malus domestica HOM05D004894 ORTHO05D005689 6.8e-08 61.6 153 30.7
Carub.0008s1004 Capsella rubella HOM05D007751 ORTHO05D009813 1.2e-07 60.8 140 32.9
MD10G1032600 Malus domestica HOM05D004894 ORTHO05D005689 1.7e-06 57.0 136 30.9


User provided reference genes

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