Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g11610 Schrenkiella parvula HOM05D000171 ORTHO05D000101 7.8e-103 377.1 186 100.0
Sp3g03160 Schrenkiella parvula HOM05D000171 ORTHO05D000101 5.5e-64 248.1 159 78.6
AT1G71290 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 1.4e-30 137.1 162 48.8
Carub.0002s1816 Capsella rubella HOM05D000171 ORTHO05D000101 4.5e-26 122.1 159 44.7
AL2G29710 Arabidopsis lyrata HOM05D002725 ORTHO05D003279 5.0e-25 118.6 150 46.7
AL2G29730 Arabidopsis lyrata HOM05D002725 ORTHO05D003279 1.5e-24 117.1 150 46.0
Carub.0002s1403 Capsella rubella HOM05D000171 ORTHO05D000101 9.5e-24 114.4 160 43.8
AT1G70970 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 3.6e-23 112.5 161 42.9
AT1G70390 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 6.8e-22 108.2 148 43.9
AT1G70380 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 8.9e-22 107.8 155 43.2
Carub.0004s0661 Capsella rubella HOM05D000171 ORTHO05D000101 8.9e-22 107.8 162 44.4
AL7G22270 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.6e-21 106.3 149 40.3
AT1G70960 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 3.4e-21 105.9 149 43.0
A02p40260 Brassica napus HOM05D000171 ORTHO05D033637 1.7e-20 103.6 159 39.0
Thhalv10019476m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 2.8e-20 102.8 160 39.4
Carub.0002s1707 Capsella rubella HOM05D000171 ORTHO05D000101 3.1e-19 99.4 177 41.8
BcaC05g30241 Brassica carinata HOM05D000171 ORTHO05D000101 4.1e-19 99.0 163 42.3
BcaC05g30295 Brassica carinata HOM05D000750 ORTHO05D000714 4.1e-19 99.0 163 42.3
AL6G22600 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 7.0e-19 98.2 154 35.7
CARHR064250 Cardamine hirsuta HOM05D000171 ORTHO05D000101 3.5e-18 95.9 163 41.7
BolC1t05729H Brassica oleracea HOM05D000171 ORTHO05D000101 5.9e-18 95.1 157 33.8
Carub.0002s1401 Capsella rubella HOM05D000171 ORTHO05D000101 1.7e-17 93.6 150 41.3
Carub.0002s1709 Capsella rubella HOM05D000171 ORTHO05D000101 2.9e-17 92.8 166 39.2
AL2G30510 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.5e-16 90.5 145 37.2
AL3G14720 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.5e-16 90.5 160 33.8
Carub.0003s0382 Capsella rubella HOM05D000171 ORTHO05D000101 1.9e-16 90.1 128 37.5
Carub.0002s1400 Capsella rubella HOM05D000171 ORTHO05D000101 2.5e-16 89.7 171 35.7
Carub.0002s1408 Capsella rubella HOM05D000171 ORTHO05D000101 2.5e-16 89.7 170 38.8
AL6G22480 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.8e-15 86.3 152 34.9
Carub.0002s1774 Capsella rubella HOM05D000171 ORTHO05D000101 2.8e-15 86.3 113 46.0
Sp3g03500 Schrenkiella parvula HOM05D000171 ORTHO05D000101 2.8e-15 86.3 159 32.1
AL6G22490 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 4.7e-15 85.5 151 35.1
AL2G30490 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.4e-14 84.0 176 37.5
A05p43460 Brassica napus HOM05D001569 ORTHO05D001723 2.3e-14 83.2 161 36.6
A09p17250 Brassica napus HOM05D000171 ORTHO05D000101 2.3e-14 83.2 149 36.2
BraA09t37357Z Brassica rapa HOM05D000171 ORTHO05D000101 2.3e-14 83.2 149 36.2
BraA05t23086Z Brassica rapa HOM05D001569 ORTHO05D001723 8.9e-14 81.3 161 36.6
Thhalv10003391m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.2e-13 80.9 141 37.6
AL3G14710 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.5e-13 80.5 162 29.6
BraA01t04439Z Brassica rapa HOM05D000171 ORTHO05D000101 1.5e-13 80.5 142 33.8
Thhalv10022001m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.5e-13 80.5 155 33.5
BNapus_Darmor_BZH_scaffold_118p00140 Brassica napus HOM05D000171 ORTHO05D000101 2.0e-13 80.1 142 33.8
BraA09t38680Z Brassica rapa HOM05D000171 ORTHO05D000101 2.0e-13 80.1 149 34.9
BcaC04g22265 Brassica carinata HOM05D000171 ORTHO05D000101 2.6e-13 79.7 149 34.9
BolC9t55046H Brassica oleracea HOM05D000171 ORTHO05D000101 2.6e-13 79.7 149 34.9
BolC9t55051H Brassica oleracea HOM05D000171 ORTHO05D000101 2.6e-13 79.7 149 34.9
AL2G29700 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 3.4e-13 79.3 150 36.0
BcaC05g26731 Brassica carinata HOM05D000171 ORTHO05D000101 4.4e-13 79.0 148 29.1
C09p21460 Brassica napus HOM05D000171 ORTHO05D000101 1.3e-12 77.4 149 34.2
Thhalv10022230m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 3.7e-12 75.9 150 32.0
Carub.0007s1067 Capsella rubella HOM05D000171 ORTHO05D000101 4.9e-12 75.5 155 34.2
BcaNung05348 Brassica carinata HOM05D000171 ORTHO05D000101 5.4e-11 72.0 148 33.8
AL3G14700 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.6e-10 70.5 150 32.7
Carub.0003s2424 Capsella rubella HOM05D000171 ORTHO05D000101 2.7e-10 69.7 164 29.3
Carub.0006s1026 Capsella rubella HOM05D000171 ORTHO05D000101 2.7e-10 69.7 149 29.5
Thhalv10026790m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 3.5e-10 69.3 167 29.9
Carub.0006s1025 Capsella rubella HOM05D000171 ORTHO05D000101 6.0e-10 68.6 118 35.6
AT1G76830 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 1.0e-09 67.8 163 33.7
BcaC09g47782 Brassica carinata HOM05D000171 ORTHO05D000101 1.0e-09 67.8 157 29.3
BolC1t05731H Brassica oleracea HOM05D000171 ORTHO05D000101 1.0e-09 67.8 129 27.1
BNapus_Darmor_BZH_scaffold_78p00970 Brassica napus HOM05D000171 ORTHO05D000101 1.7e-09 67.0 124 27.4
BolC3t19773H Brassica oleracea HOM05D000171 ORTHO05D000101 3.9e-09 65.9 152 31.6
AT1G47730 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 5.0e-09 65.5 149 28.9
Sp3g03510 Schrenkiella parvula HOM05D000171 ORTHO05D000101 8.6e-09 64.7 150 31.3
AT3G04660 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 1.1e-08 64.3 157 27.4
AT4G29970 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 1.5e-08 63.9 122 34.4
BcaC05g26732 Brassica carinata HOM05D000171 ORTHO05D000101 2.5e-08 63.2 159 27.7
BolC8t50065H Brassica oleracea HOM05D000171 ORTHO05D000101 2.5e-08 63.2 155 25.2
C08p24470 Brassica napus HOM05D000171 ORTHO05D000101 4.3e-08 62.4 155 25.2
C04p17600 Brassica napus HOM05D000171 ORTHO05D000101 5.6e-08 62.0 159 28.9
BolC4t23307H Brassica oleracea HOM05D000171 ORTHO05D000101 5.6e-08 62.0 159 28.9
Thhalv10015870m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 5.6e-08 62.0 150 30.7
BcaC04g22264 Brassica carinata HOM05D000171 ORTHO05D000101 9.5e-08 61.2 79 41.8
BolC4t27662H Brassica oleracea HOM05D000171 ORTHO05D000101 1.2e-07 60.8 162 26.5
C04p61790 Brassica napus HOM05D000171 ORTHO05D000101 1.6e-07 60.5 162 26.5
BraA01t04510Z Brassica rapa HOM05D000171 ORTHO05D000101 2.8e-07 59.7 152 26.3
BraA09t39298Z Brassica rapa HOM05D000171 ORTHO05D000101 3.6e-07 59.3 150 30.7
A09p37860 Brassica napus HOM05D000171 ORTHO05D000101 4.7e-07 58.9 150 30.7
C08p33960 Brassica napus HOM05D000171 ORTHO05D000101 4.7e-07 58.9 158 27.2
Carub.0003s2509 Capsella rubella HOM05D000171 ORTHO05D000101 4.7e-07 58.9 122 31.1
Aa31LG1G23370 Aethionema arabicum HOM05D000171 ORTHO05D000101 6.2e-07 58.5 164 25.0
A09p51160 Brassica napus HOM05D000171 ORTHO05D000101 6.2e-07 58.5 158 27.2
C09p71120 Brassica napus HOM05D000171 ORTHO05D000101 6.2e-07 58.5 158 29.1
BraA09t40560Z Brassica rapa HOM05D000171 ORTHO05D000101 6.2e-07 58.5 158 27.2
Thhalv10012180m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 6.2e-07 58.5 150 27.3
BcaC09g50158 Brassica carinata HOM05D000171 ORTHO05D000101 8.0e-07 58.2 166 30.7
C09p71110 Brassica napus HOM05D000171 ORTHO05D000101 8.0e-07 58.2 158 28.5
BolC1t02764H Brassica oleracea HOM05D000171 ORTHO05D000101 8.0e-07 58.2 166 30.7
Thhalv10019461m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 8.0e-07 58.2 153 28.1
BcaC07g40211 Brassica carinata HOM05D000171 ORTHO05D000101 1.1e-06 57.8 153 28.8
BNapus_Darmor_BZH_scaffold_78p00960 Brassica napus HOM05D000171 ORTHO05D000101 1.1e-06 57.8 152 25.7
BcaC02g08657 Brassica carinata HOM05D000171 ORTHO05D000101 1.4e-06 57.4 157 29.3
BcaC02g08658 Brassica carinata HOM05D000171 ORTHO05D000101 1.4e-06 57.4 157 29.3
BcaC05g26608 Brassica carinata HOM05D000171 ORTHO05D000101 1.4e-06 57.4 154 28.6
C05p25940 Brassica napus HOM05D000171 ORTHO05D000101 1.4e-06 57.4 154 28.6
C05p26570 Brassica napus HOM05D000171 ORTHO05D000101 1.4e-06 57.4 154 28.6
BolC9t59874H Brassica oleracea HOM05D000171 ORTHO05D000101 1.4e-06 57.4 158 28.5
AL3G22290 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.8e-06 57.0 151 28.5
A06p02840 Brassica napus HOM05D000171 ORTHO05D000101 1.8e-06 57.0 151 28.5
BraA06t23491Z Brassica rapa HOM05D000171 ORTHO05D000101 1.8e-06 57.0 151 28.5
A10p30640 Brassica napus HOM05D000171 ORTHO05D000101 2.3e-06 56.6 158 28.5
A09p38230 Brassica napus HOM05D000171 ORTHO05D000101 3.1e-06 56.2 152 27.6
CARHR210940 Cardamine hirsuta HOM05D000171 ORTHO05D000101 3.1e-06 56.2 158 25.9
Thhalv10012359m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 3.1e-06 56.2 157 26.1
A10p24780 Brassica napus HOM05D000171 ORTHO05D000101 4.0e-06 55.8 150 29.3
C06p02070 Brassica napus HOM05D000171 ORTHO05D000101 4.0e-06 55.8 148 27.0
Carub.0004s0656 Capsella rubella HOM05D000171 ORTHO05D000101 4.0e-06 55.8 96 43.8
CARHR158400 Cardamine hirsuta HOM05D000171 ORTHO05D000101 4.0e-06 55.8 162 26.5
Thhalv10015726m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 4.0e-06 55.8 179 26.3
AL8G39600 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 6.8e-06 55.1 155 31.0
Thhalv10002973m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 6.8e-06 55.1 158 25.9
Thhalv10025237m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 6.8e-06 55.1 173 24.9


User provided reference genes

Program Settings