Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 5.0e-93 344.4 167 100.0
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 6.4e-80 300.8 167 86.8
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 1.1e-79 300.1 167 87.4
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 2.7e-78 295.4 167 85.6
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 6.0e-78 294.3 167 85.0
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 7.8e-78 293.9 167 84.4
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 6.6e-77 290.8 167 84.4
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 6.6e-77 290.8 167 84.4
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 6.2e-75 284.3 159 85.5
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 6.9e-74 280.8 162 81.5
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 8.4e-72 273.9 175 76.6
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 3.0e-61 238.8 174 65.5
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 1.8e-45 186.4 169 56.2
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 2.5e-44 182.6 170 54.7
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 5.7e-44 181.4 171 53.8
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 2.2e-43 179.5 173 54.3
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 2.2e-43 179.5 169 53.3
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 2.8e-43 179.1 172 53.5
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 2.8e-43 179.1 175 51.4
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 4.8e-43 178.3 163 55.2
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 6.3e-43 177.9 174 53.4
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 6.3e-43 177.9 173 53.8
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 8.2e-43 177.6 164 53.0
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.1e-42 177.2 171 53.8
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 1.1e-42 177.2 171 53.8
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 1.4e-42 176.8 171 52.6
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 1.8e-42 176.4 170 52.9
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 1.8e-42 176.4 164 56.1
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 2.4e-42 176.0 172 53.5
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 2.4e-42 176.0 164 56.1
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 2.4e-42 176.0 171 52.6
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 3.1e-42 175.6 161 54.7
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 3.1e-42 175.6 171 53.2
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 4.1e-42 175.3 173 52.6
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 5.3e-42 174.9 164 55.5
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 5.3e-42 174.9 166 53.6
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 5.3e-42 174.9 171 52.6
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 6.9e-42 174.5 171 53.2
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 9.0e-42 174.1 175 50.9
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 1.2e-41 173.7 171 52.0
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.2e-41 173.7 175 50.9
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 1.2e-41 173.7 162 55.6
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 1.2e-41 173.7 168 53.0
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 1.2e-41 173.7 167 54.5
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 1.5e-41 173.3 175 50.9
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 1.5e-41 173.3 170 53.5
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 2.0e-41 172.9 166 52.4
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 4.5e-41 171.8 165 52.7
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 4.5e-41 171.8 171 51.5
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 4.5e-41 171.8 167 53.9
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 4.5e-41 171.8 168 52.4
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 7.6e-41 171.0 172 51.7
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 1.3e-40 170.2 169 53.3
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 1.7e-40 169.9 162 53.1
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 2.9e-40 169.1 168 51.2
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 2.9e-40 169.1 162 53.1
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 5.0e-40 168.3 170 52.9
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 5.0e-40 168.3 164 54.3
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 6.5e-40 167.9 165 53.3
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 8.5e-40 167.5 165 52.7
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 8.5e-40 167.5 164 53.7
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 1.1e-39 167.2 165 51.5
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 1.1e-39 167.2 164 53.7
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 1.1e-39 167.2 159 52.8
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 1.9e-39 166.4 168 51.2
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 1.9e-39 166.4 168 51.2
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 1.9e-39 166.4 170 53.5
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 2.5e-39 166.0 167 49.1
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 3.2e-39 165.6 176 50.0
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 4.2e-39 165.2 164 51.8
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 4.2e-39 165.2 169 51.5
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 4.2e-39 165.2 168 51.2
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 5.5e-39 164.9 169 52.1
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 5.5e-39 164.9 172 52.3
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 5.5e-39 164.9 172 52.3
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 5.5e-39 164.9 169 52.7
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 5.5e-39 164.9 167 53.3
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 7.2e-39 164.5 175 49.1
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 9.3e-39 164.1 162 52.5
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 1.2e-38 163.7 166 49.4
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 1.2e-38 163.7 167 53.3
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 1.6e-38 163.3 179 47.5
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 2.1e-38 162.9 167 51.5
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 2.1e-38 162.9 170 50.0
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 2.7e-38 162.5 170 51.8
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 4.6e-38 161.8 168 50.6
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 4.6e-38 161.8 166 50.6
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 6.1e-38 161.4 169 49.1
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 7.9e-38 161.0 167 52.1
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 7.9e-38 161.0 165 48.5
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.4e-37 160.2 167 51.5
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 1.8e-37 159.8 170 52.4
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 3.0e-37 159.1 165 49.1
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 3.0e-37 159.1 161 52.8
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 3.9e-37 158.7 171 48.5
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 5.1e-37 158.3 161 52.2
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 6.7e-37 157.9 170 51.8
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 1.1e-36 157.1 166 48.2
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 1.5e-36 156.8 166 48.2
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 2.5e-36 156.0 163 51.5
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 5.7e-36 154.8 174 49.4
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 7.4e-36 154.5 166 48.2
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 9.7e-36 154.1 165 46.7
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 9.7e-36 154.1 166 48.8
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 2.2e-35 152.9 176 48.3
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 2.2e-35 152.9 176 48.3
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 4.8e-35 151.8 166 50.6
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 4.8e-35 151.8 170 48.2
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 6.3e-35 151.4 110 64.5
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 6.3e-35 151.4 114 62.3
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 8.2e-35 151.0 157 50.3
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 8.2e-35 151.0 165 47.3
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 1.8e-34 149.8 170 48.2
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 4.1e-34 148.7 168 50.0
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 4.1e-34 148.7 166 48.2
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 1.2e-33 147.1 167 50.9
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 5.9e-33 144.8 168 48.8
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 1.0e-32 144.1 162 48.1
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 1.7e-32 143.3 165 48.5
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 5.0e-32 141.7 166 48.2
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 8.5e-32 141.0 166 47.6
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 3.2e-31 139.0 166 44.0
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 3.2e-31 139.0 165 43.6
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 6.1e-30 134.8 169 42.6
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 7.9e-30 134.4 169 41.4
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 7.9e-30 134.4 110 55.5
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.4e-29 133.7 154 50.6
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.4e-29 133.7 154 50.6
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 2.3e-29 132.9 111 60.4
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 3.9e-29 132.1 110 56.4
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 5.1e-29 131.7 161 46.0
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 4.4e-28 128.6 121 51.2
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 4.4e-28 128.6 135 47.4
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 7.4e-28 127.9 157 46.5
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.4e-26 123.6 87 62.1
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 2.4e-26 122.9 108 51.9
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 3.4e-25 119.0 156 40.4
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 7.7e-25 117.9 160 43.8
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 1.0e-24 117.5 142 45.1
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 1.4e-23 113.6 151 40.4
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.4e-23 113.6 164 38.4
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 2.1e-22 109.8 157 39.5
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.7e-22 109.4 161 39.1
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.3e-21 106.3 165 35.2
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 6.7e-21 104.8 159 37.7
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.7e-19 100.1 109 43.1
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 5.2e-13 78.6 176 31.2
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 2.2e-11 73.2 148 31.1
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 1.1e-10 70.9 72 41.7


User provided reference genes

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