Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 5.8e-127 457.6 235 100.0
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 2.8e-121 438.7 236 95.8
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 2.3e-120 435.6 236 95.8
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 3.1e-120 435.3 236 94.5
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 5.2e-120 434.5 236 94.5
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 5.2e-120 434.5 236 94.5
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 5.2e-120 434.5 236 94.5
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 1.6e-116 422.9 236 92.4
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 1.0e-115 420.2 236 91.9
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 1.7e-115 419.5 236 91.5
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 3.9e-115 418.3 236 91.1
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 3.6e-113 411.8 229 93.4
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 2.0e-111 406.0 236 88.1
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 7.1e-109 397.5 236 85.6
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 1.5e-103 379.8 232 81.0
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 7.1e-101 370.9 232 78.9
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 7.8e-100 367.5 232 78.0
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 5.1e-99 364.8 232 77.2
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 5.1e-99 364.8 232 77.6
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 6.6e-99 364.4 232 77.2
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 6.6e-99 364.4 232 77.2
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 8.7e-99 364.0 236 78.4
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 4.3e-98 361.7 234 76.5
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 9.6e-98 360.5 236 76.7
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 9.6e-98 360.5 232 76.7
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 1.3e-97 360.1 232 75.4
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 1.6e-97 359.8 232 76.7
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 1.6e-97 359.8 232 76.3
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 2.8e-97 359.0 236 75.8
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 2.8e-97 359.0 236 75.4
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 6.2e-97 357.8 234 76.1
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 6.2e-97 357.8 232 75.9
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 1.1e-96 357.1 236 76.3
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 1.4e-96 356.7 236 76.3
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 1.8e-96 356.3 234 75.2
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 2.4e-96 355.9 236 76.7
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 2.4e-96 355.9 236 75.8
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 2.4e-96 355.9 232 75.9
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 4.0e-96 355.1 238 76.1
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 9.0e-96 354.0 225 78.2
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 1.2e-95 353.6 232 74.1
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 1.5e-95 353.2 233 76.0
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 2.6e-95 352.4 236 75.0
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 3.4e-95 352.1 232 75.9
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 4.4e-95 351.7 232 75.9
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 7.6e-95 350.9 237 75.5
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 1.7e-94 349.7 231 73.6
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 2.2e-94 349.4 232 73.7
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 2.9e-94 349.0 232 75.0
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 2.9e-94 349.0 240 74.2
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 2.9e-94 349.0 235 73.6
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 3.8e-94 348.6 232 73.3
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 4.9e-94 348.2 230 73.5
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 4.9e-94 348.2 232 74.6
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 6.4e-94 347.8 236 74.6
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 6.4e-94 347.8 236 73.3
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 8.4e-94 347.4 232 75.9
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 1.1e-93 347.1 236 73.3
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 2.4e-93 345.9 232 73.7
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 1.6e-92 343.2 232 72.0
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 2.1e-92 342.8 232 72.4
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 2.7e-92 342.4 232 73.7
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 3.0e-91 339.0 236 73.7
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 6.6e-91 337.8 238 72.3
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 6.6e-91 337.8 233 73.4
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 8.7e-91 337.4 232 71.1
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 1.1e-90 337.0 282 63.8
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 1.5e-90 336.7 238 72.3
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 1.9e-90 336.3 235 71.9
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 1.6e-89 333.2 256 66.4
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 1.4e-88 330.1 236 67.4
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 1.8e-88 329.7 300 59.0
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.0e-87 326.2 236 72.5
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 2.6e-87 325.9 219 74.4
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 2.6e-87 325.9 238 70.2
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 7.6e-87 324.3 227 70.9
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 1.3e-86 323.6 210 79.0
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 1.7e-86 323.2 229 70.3
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 8.4e-86 320.9 225 71.6
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 1.4e-85 320.1 268 62.3
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 7.1e-85 317.8 233 68.2
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 7.1e-85 317.8 233 68.2
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 1.2e-84 317.0 233 69.1
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 1.6e-84 316.6 206 76.2
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 1.6e-84 316.6 233 67.8
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 2.7e-84 315.8 233 68.7
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 3.5e-84 315.5 201 76.6
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 4.6e-84 315.1 201 77.1
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 6.7e-83 311.2 232 70.3
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 3.3e-82 308.9 239 66.5
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 7.4e-82 307.8 229 70.3
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 7.4e-82 307.8 229 70.3
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 2.8e-81 305.8 232 63.4
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.8e-81 305.8 211 74.4
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 6.2e-81 304.7 198 76.3
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 1.1e-80 303.9 232 63.8
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 5.3e-80 301.6 201 73.1
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 9.0e-80 300.8 201 75.1
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 2.6e-79 299.3 220 68.6
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 3.4e-79 298.9 208 71.2
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 1.7e-78 296.6 264 61.0
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 2.2e-78 296.2 187 76.5
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 4.9e-78 295.0 225 66.7
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 1.1e-77 293.9 232 61.2
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 4.2e-77 292.0 218 67.4
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 1.8e-75 286.6 196 69.9
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 3.9e-75 285.4 234 62.4
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 9.6e-74 280.8 166 80.7
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 2.1e-73 279.6 186 75.3
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 1.8e-72 276.6 167 80.2
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 4.1e-72 275.4 233 57.5
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.3e-70 270.4 198 70.2
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 6.5e-70 268.1 225 56.4
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 1.9e-69 266.5 188 69.1
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 7.9e-68 261.2 166 79.5
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 6.7e-67 258.1 229 54.6
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 5.7e-66 255.0 237 60.3
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 1.3e-65 253.8 219 53.0
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 4.8e-65 251.9 230 59.1
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 8.5e-62 241.1 147 81.0
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 5.5e-61 238.4 220 53.2
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 1.2e-60 237.3 224 53.1
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 3.0e-59 232.6 201 62.2
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 5.1e-59 231.9 151 75.5
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 6.3e-57 224.9 135 83.7
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 8.2e-57 224.6 135 84.4
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 1.7e-54 216.9 238 58.0
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 2.2e-49 199.9 126 78.6
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 8.2e-49 198.0 167 56.3
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 2.0e-42 176.8 232 45.3
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 6.3e-41 171.8 232 44.0
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 4.5e-39 165.6 106 76.4
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 7.7e-39 164.9 104 78.8
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 1.3e-38 164.1 106 74.5
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 1.6e-36 157.1 102 74.5
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 5.2e-35 152.1 112 66.1
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 2.8e-33 146.4 262 38.9
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 1.8e-32 143.7 209 39.7
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 5.0e-30 135.6 141 48.9
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 1.5e-29 134.0 215 35.8
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 3.0e-27 126.3 78 75.6
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 1.0e-22 111.3 224 34.8
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 1.0e-22 111.3 224 34.8
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 6.6e-22 108.6 102 60.8
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 4.0e-19 99.4 74 63.5
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 9.8e-18 94.7 68 73.5
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 4.6e-15 85.9 209 31.6
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 1.0e-14 84.7 49 81.6
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 2.3e-14 83.6 49 79.6
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 3.0e-14 83.2 51 74.5
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 2.5e-13 80.1 53 71.7
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 3.3e-13 79.7 79 51.9
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 1.8e-11 73.9 52 65.4
BcaB04g17066 Brassica carinata HOM05D037786 ORTHO05D005320 8.3e-09 65.1 46 71.7
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 2.4e-08 63.5 50 56.0
HPP92_014526 Vanilla planifolia HOM05D004637 ORTHO05D005320 2.0e-07 60.5 44 61.4
ATR0706G173 Amborella trichopoda HOM05D004637 ORTHO05D005320 1.3e-06 57.8 52 50.0


User provided reference genes

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