Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g10510 Schrenkiella parvula HOM05D006323 ORTHO05D007827 7.9e-252 873.2 423 100.0
Thhalv10028685m.g Eutrema salsugineum HOM05D006323 ORTHO05D007827 7.2e-221 770.4 425 88.5
C03p33680 Brassica napus HOM05D006323 ORTHO05D007827 4.9e-201 704.5 427 82.2
BolC3t15688H Brassica oleracea HOM05D006323 ORTHO05D007827 4.9e-201 704.5 427 82.2
BcaB01g02882 Brassica carinata HOM05D006323 ORTHO05D007827 2.0e-199 699.1 425 82.6
BcaC01g04786 Brassica carinata HOM05D006323 ORTHO05D007827 1.3e-198 696.4 424 81.4
BraA03t12002Z Brassica rapa HOM05D006323 ORTHO05D007827 2.4e-192 675.6 424 79.2
A03p27900 Brassica napus HOM05D006323 ORTHO05D007827 3.2e-192 675.2 424 79.0
Carub.0003s1171 Capsella rubella HOM05D006323 ORTHO05D007827 3.9e-190 668.3 431 78.7
AL3G24000 Arabidopsis lyrata HOM05D006323 ORTHO05D007827 4.3e-189 664.8 429 78.6
AT3G12350 Arabidopsis thaliana HOM05D006323 ORTHO05D007827 9.9e-186 653.7 424 76.9
CARHR287100 Cardamine hirsuta HOM05D006323 ORTHO05D007827 1.7e-185 652.9 422 77.5
BcaC01g04794 Brassica carinata HOM05D006323 ORTHO05D007827 1.5e-181 639.8 424 76.7
Aa31LG5G21510 Aethionema arabicum HOM05D006323 ORTHO05D007827 1.5e-162 576.6 428 68.9
THA.LOC104825780 Tarenaya hassleriana HOM05D006323 ORTHO05D007827 4.3e-157 558.5 420 66.4
Cpa.g.sc142.31 Carica papaya HOM05D006323 ORTHO05D007827 2.0e-138 496.5 450 56.9
Cpa.g.sc142.34 Carica papaya HOM05D006323 ORTHO05D007827 4.5e-138 495.4 450 56.7
Actinidia38108 Actinidia chinensis HOM05D006323 ORTHO05D007827 4.8e-124 448.7 441 53.3
Haze_22429 Corylus avellana HOM05D006323 ORTHO05D007827 8.2e-124 448.0 452 51.5
Dinv44950 Davidia involucrata HOM05D006323 ORTHO05D007827 1.1e-123 447.6 456 51.1
Nn5g30609 Nelumbo nucifera HOM05D006323 ORTHO05D007827 1.4e-123 447.2 450 53.3
Hma1.2p1_0819F.1_g223630 Hydrangea macrophylla HOM05D006323 ORTHO05D007827 2.4e-123 446.4 456 51.5
Thecc.08G088000 Theobroma cacao HOM05D006323 ORTHO05D007827 9.1e-123 444.5 444 53.4
Duzib093G0619 Durio zibethinus HOM05D006323 ORTHO05D007827 2.6e-122 443.0 435 54.3
QL12p038177 Quercus lobata HOM05D006323 ORTHO05D007827 5.9e-122 441.8 449 53.5
Ciclev10001174m.g Citrus clementina HOM05D006323 ORTHO05D007827 1.1e-120 437.6 442 52.5
TAR381G0342 Trochodendron aralioides HOM05D006323 ORTHO05D007827 5.5e-120 435.3 448 52.7
TAR381G1608 Trochodendron aralioides HOM05D006323 ORTHO05D007827 9.4e-120 434.5 448 52.5
CiPaw.07G174200 Carya illinoinensis HOM05D006323 ORTHO05D007827 1.2e-119 434.1 452 50.7
CSS0045238 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 1.6e-119 433.7 452 49.8
Manes.18G047100 Manihot esculenta HOM05D006323 ORTHO05D007827 8.0e-119 431.4 438 53.0
ClCG08G016540 Citrullus lanatus HOM05D006323 ORTHO05D007827 2.0e-117 426.8 454 49.6
MELO3C010800.2 Cucumis melo HOM05D006323 ORTHO05D007827 2.0e-117 426.8 452 50.0
CSS0024022 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 3.3e-117 426.0 452 49.1
Cfa013771 Carpinus fangiana HOM05D006323 ORTHO05D007827 9.7e-117 424.5 452 49.3
CsaV3_2G026070 Cucumis sativus L. HOM05D006323 ORTHO05D007827 1.3e-116 424.1 455 49.0
Potri.002G117900 Populus trichocarpa HOM05D006323 ORTHO05D007827 2.2e-116 423.3 436 51.4
Gorai.009G220400 Gossypium raimondii HOM05D006323 ORTHO05D007827 2.8e-116 422.9 441 52.8
TWI56G0563 Tripterygium wilfordii HOM05D006323 ORTHO05D007827 3.7e-116 422.5 448 50.4
Gohir.D05G213700 Gossypium hirsutum HOM05D006323 ORTHO05D007827 3.1e-115 419.5 441 52.6
Sabra02G0092600 Salix brachista HOM05D006323 ORTHO05D007827 3.1e-115 419.5 434 51.4
Gohir.A05G210400 Gossypium hirsutum HOM05D006323 ORTHO05D007827 9.1e-115 417.9 442 52.0
Atru.chr13.839 Acer truncatum HOM05D006323 ORTHO05D007827 2.2e-113 413.3 435 50.6
CSS0010458 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 2.9e-113 412.9 458 48.7
Aqoxy6G02596 Aquilegia oxysepala HOM05D006323 ORTHO05D007827 5.0e-113 412.1 456 48.5
CSS0050369 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 5.0e-113 412.1 456 49.8
Nitab4.5_0003725g0070 Nicotiana tabacum HOM05D006323 ORTHO05D007827 8.5e-113 411.4 440 50.2
Sed0007452 Sechium edule HOM05D006323 ORTHO05D007827 1.5e-112 410.6 449 48.8
HanXRQChr10g0298611 Helianthus annuus HOM05D006323 ORTHO05D007827 1.9e-112 410.2 441 50.6
TPR.G13155 Trifolium pratense HOM05D006323 ORTHO05D007827 2.7e-111 406.4 464 47.2
Prupe.1G422100 Prunus persica HOM05D006323 ORTHO05D007827 8.0e-111 404.8 449 48.1
PSO675G0675 Papaver somniferum HOM05D006323 ORTHO05D007827 6.7e-110 401.7 458 47.6
CANSAT25G0442 Cannabis sativa HOM05D006323 ORTHO05D007827 1.2e-109 401.0 453 49.9
Ca_13213_v3 Cicer arietinum L. HOM05D006323 ORTHO05D007827 1.2e-109 401.0 453 48.6
Lj5g0017088 Lotus japonicus HOM05D006323 ORTHO05D007827 1.2e-109 401.0 448 48.0
PSO541G5960 Papaver somniferum HOM05D006323 ORTHO05D007827 1.2e-109 401.0 458 47.4
Migut.N02786 Erythranthe guttata HOM05D006323 ORTHO05D007827 1.5e-109 400.6 438 47.9
Eucgr.F00088 Eucalyptus grandis HOM05D006323 ORTHO05D007827 4.4e-109 399.1 443 47.6
Medtr1g017940 Medicago truncatula HOM05D006323 ORTHO05D007827 5.7e-109 398.7 449 47.2
Nitab4.5_0000497g0170 Nicotiana tabacum HOM05D006323 ORTHO05D007827 5.7e-109 398.7 440 48.2
Oeu016579.1 Olea europaea HOM05D006323 ORTHO05D007827 5.7e-109 398.7 436 47.7
vmacro22049 Vaccinium macrocarpon HOM05D006323 ORTHO05D007827 9.7e-109 397.9 463 49.2
Sopen04g031380 Solanum pennellii HOM05D006323 ORTHO05D007827 2.2e-108 396.7 437 48.7
Psat6g018000 Pisum sativum HOM05D006323 ORTHO05D007827 1.1e-107 394.4 459 47.3
Hund05295 Selenicereus undatus HOM05D006323 ORTHO05D007827 1.8e-107 393.7 432 47.2
FvH4_2g32960 Fragaria vesca HOM05D006323 ORTHO05D007827 3.1e-107 392.9 442 48.4
FAN24G0652 Fragaria x ananassa HOM05D006323 ORTHO05D007827 4.1e-107 392.5 442 48.4
FAN20G1244 Fragaria x ananassa HOM05D006323 ORTHO05D007827 2.7e-106 389.8 444 47.7
PGSC0003DMG400010620 Solanum tuberosum HOM05D006323 ORTHO05D007827 3.5e-106 389.4 437 48.3
RcHm_v2.0_Chr6g0309741 Rosa chinensis HOM05D006323 ORTHO05D007827 4.5e-106 389.0 450 46.9
CAN.G724.32 Capsicum annuum HOM05D006323 ORTHO05D007827 5.9e-106 388.7 439 46.7
PGR083G0013 Punica granatum HOM05D006323 ORTHO05D007827 5.9e-106 388.7 441 47.6
arahy.Tifrunner.gnm1.ann1.JK4I75 Arachis hypogaea HOM05D006323 ORTHO05D007827 2.2e-105 386.7 471 44.4
Lalb_Chr14g0368151 Lupinus albus HOM05D006323 ORTHO05D007827 6.5e-105 385.2 472 47.0
FAN15G2783 Fragaria x ananassa HOM05D006323 ORTHO05D007827 1.5e-104 384.0 447 47.7
EL10Ac1g02373 Beta vulgaris HOM05D006323 ORTHO05D007827 2.5e-104 383.3 440 46.8
FAN27G3326 Fragaria x ananassa HOM05D006323 ORTHO05D007827 3.2e-104 382.9 444 47.3
Rhsim07G0219300 Rhododendron simsii HOM05D006323 ORTHO05D007827 2.7e-103 379.8 452 47.8
Phvul.001G028300 Phaseolus vulgaris HOM05D006323 ORTHO05D007827 4.7e-103 379.0 444 47.5
Lsat_1_v5_gn_1_1301 Lactuca sativa HOM05D006323 ORTHO05D007827 1.4e-102 377.5 443 47.4
SGA_v2.0_scaffold28G11834 Striga asiatica HOM05D006323 ORTHO05D007827 1.7e-100 370.5 446 46.2
Glyma.17G234600 Glycine max HOM05D006323 ORTHO05D007827 4.8e-100 369.0 452 45.4
Glyma.14G089027 Glycine max HOM05D006323 ORTHO05D007827 5.9e-98 362.1 446 46.2
SalBow2G0555 Salvia bowleyana HOM05D006323 ORTHO05D007827 9.5e-96 354.8 451 43.0
VMungo0647G1220 Vigna mungo HOM05D006323 ORTHO05D007827 2.1e-95 353.6 444 44.4
CDE04G3275 Ceratophyllum demersum HOM05D006323 ORTHO05D007827 6.8e-94 348.6 452 42.7
GSVIVG01009337001 Vitis vinifera HOM05D006323 ORTHO05D007827 3.7e-92 342.8 451 43.0
ATR0739G201 Amborella trichopoda HOM05D006323 ORTHO05D007827 1.8e-91 340.5 484 40.7
HPP92_013407 Vanilla planifolia HOM05D006323 ORTHO05D007827 1.2e-90 337.8 431 42.9
TAR625G0711 Trochodendron aralioides HOM05D006323 ORTHO05D007827 5.0e-89 332.4 423 43.7
AUR62022472 Chenopodium quinoa HOM05D006323 ORTHO05D007827 1.5e-88 330.9 439 42.1
Ah.05g167080 Amaranthus hybridus HOM05D006323 ORTHO05D007827 2.5e-88 330.1 433 42.5
arahy.Tifrunner.gnm1.ann1.694GR7 Arachis hypogaea HOM05D006323 ORTHO05D007827 2.0e-85 320.5 427 42.2
QL05p065459 Quercus lobata HOM05D006323 ORTHO05D007827 9.2e-83 311.6 297 56.6
Sc26g0004210 Simmondsia chinensis HOM05D006323 ORTHO05D007827 1.7e-81 307.4 403 44.2
CAN.G724.31 Capsicum annuum HOM05D006323 ORTHO05D007827 6.8e-78 295.4 421 40.9
AUR62037416 Chenopodium quinoa HOM05D006323 ORTHO05D007827 6.0e-74 282.3 429 38.0
Mapoly0007s0129 Marchantia polymorpha HOM05D006323 ORTHO05D007827 6.8e-70 268.9 485 35.5
HPP92_013383 Vanilla planifolia HOM05D006323 ORTHO05D007827 5.8e-69 265.8 352 41.5
Lj4A71T64 Lonicera japonica HOM05D006323 ORTHO05D007827 2.7e-66 256.9 313 45.4
ECA247G3150 Erigeron canadensis HOM05D006323 ORTHO05D007827 1.3e-57 228.0 301 45.5
TAR628G0857 Trochodendron aralioides HOM05D006323 ORTHO05D007827 1.2e-55 221.5 276 47.8
SEGI_30290 Sequoiadendron giganteum HOM05D006323 ORTHO05D007827 2.0e-53 214.2 318 39.3
Pp3c15_12240 Physcomitrium patens HOM05D006323 ORTHO05D007827 2.6e-53 213.8 518 30.7
COL.COLO4_28496 Corchorus olitorius HOM05D006323 ORTHO05D007827 1.4e-51 208.0 238 48.3
Cc10_g05020 Coffea canephora HOM05D006323 ORTHO05D007827 8.7e-49 198.7 271 43.9
Os12g0511000 Oryza sativa ssp. japonica HOM05D006323 ORTHO05D007827 2.6e-45 187.2 425 31.1
unitig_8.g4874 Utricularia gibba HOM05D006323 ORTHO05D007827 1.9e-40 171.0 221 45.2
AagrBONN_evm.TU.Sc2ySwM_362.2944 Anthoceros agrestis HOM05D006323 ORTHO05D007827 1.1e-35 155.2 450 25.8
TAR623G1714 Trochodendron aralioides HOM05D006323 ORTHO05D007827 8.2e-31 139.0 102 59.8
CBR_g25752 Chara braunii HOM05D006323 ORTHO05D007827 1.0e-28 132.1 425 25.4
HPP92_013381 Vanilla planifolia HOM05D006323 ORTHO05D007827 2.5e-27 127.5 194 41.2
Eucgr.L02719 Eucalyptus grandis HOM05D006323 ORTHO05D007827 7.9e-26 122.5 149 43.6
FvH4_3g44630 Fragaria vesca HOM05D006323 ORTHO05D007827 3.3e-24 117.1 98 58.2
COL.COLO4_28497 Corchorus olitorius HOM05D006323 ORTHO05D007827 5.7e-24 116.3 129 46.5
unitig_8.g4875 Utricularia gibba HOM05D006323 ORTHO05D007827 2.2e-23 114.4 98 54.1
Zm00001eb264620 Zea mays HOM05D006323 ORTHO05D007827 1.2e-18 98.6 221 33.0
TAR623G1335 Trochodendron aralioides HOM05D006323 ORTHO05D007827 3.9e-17 93.6 74 55.4
MD08G1081200 Malus domestica HOM05D006323 ORTHO05D007827 6.3e-15 86.3 117 42.7
Eucgr.C01112 Eucalyptus grandis HOM05D006323 ORTHO05D007827 1.3e-12 78.6 88 46.6
Lj1P1160T24 Lonicera japonica HOM05D006323 ORTHO05D007827 1.9e-11 74.7 63 61.9
QL04p027551 Quercus lobata HOM05D006323 ORTHO05D007827 1.2e-10 72.0 91 46.2
Lj5P501T7 Lonicera japonica HOM05D006323 ORTHO05D007827 2.7e-10 70.9 58 56.9
SEGI_04434 Sequoiadendron giganteum HOM05D006323 ORTHO05D007827 1.0e-09 68.9 160 31.2


User provided reference genes

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