Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g09330 Schrenkiella parvula HOM05D001663 ORTHO05D005717 7.2e-270 933.3 475 100.0
Thhalv10028627m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 2.1e-253 878.6 475 93.5
A09p30170 Brassica napus HOM05D001663 ORTHO05D005717 7.5e-251 870.2 475 92.2
BcaC04g20910 Brassica carinata HOM05D001663 ORTHO05D005717 9.8e-251 869.8 475 92.4
C09p38040 Brassica napus HOM05D001663 ORTHO05D005717 9.8e-251 869.8 475 92.4
BolC9t56640H Brassica oleracea HOM05D001663 ORTHO05D005717 9.8e-251 869.8 475 92.4
BcaB01g01352 Brassica carinata HOM05D001663 ORTHO05D005717 1.3e-247 859.4 475 91.8
CARHR259570 Cardamine hirsuta HOM05D001663 ORTHO05D005717 5.1e-239 830.9 475 88.8
AT4G08540 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 2.8e-237 825.1 475 88.4
Carub.0006s2708 Capsella rubella HOM05D001663 ORTHO05D005717 1.0e-231 806.6 475 86.9
Aa31LG9G14450 Aethionema arabicum HOM05D001663 ORTHO05D005717 5.1e-231 804.3 478 86.2
BraA09t38581Z Brassica rapa HOM05D001663 ORTHO05D005717 3.8e-226 788.1 575 74.3
AL6G42350 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 5.1e-215 751.1 476 83.0
THA.LOC104816946 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 8.4e-210 733.8 480 78.5
THA.LOC104813136 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 2.4e-209 732.3 477 78.0
Ciclev10001001m.g Citrus clementina HOM05D001663 ORTHO05D005717 1.3e-197 693.3 480 74.2
Dinv44724 Davidia involucrata HOM05D001663 ORTHO05D005717 1.6e-197 693.0 480 74.0
COL.COLO4_16510 Corchorus olitorius HOM05D001663 ORTHO05D005717 6.3e-197 691.0 480 74.2
Ca_26536_v3 Cicer arietinum L. HOM05D001663 ORTHO05D005717 1.4e-196 689.9 477 73.4
FvH4_5g38340 Fragaria vesca HOM05D001663 ORTHO05D005717 4.1e-196 688.3 478 74.1
Phvul.008G169200 Phaseolus vulgaris HOM05D001663 ORTHO05D005717 1.2e-195 686.8 478 73.2
Thecc.08G114700 Theobroma cacao HOM05D001663 ORTHO05D005717 1.2e-195 686.8 480 74.0
Manes.18G101600 Manihot esculenta HOM05D001663 ORTHO05D005717 3.4e-195 685.3 480 73.5
TPR.G30426 Trifolium pratense HOM05D001663 ORTHO05D005717 3.4e-195 685.3 477 74.0
FAN18G1299 Fragaria x ananassa HOM05D001663 ORTHO05D005717 4.5e-195 684.9 473 74.4
Prupe.1G508500 Prunus persica HOM05D001663 ORTHO05D005717 5.9e-195 684.5 480 72.5
Medtr5g061040 Medicago truncatula HOM05D001663 ORTHO05D005717 7.6e-195 684.1 474 73.4
Lj1g0004140 Lotus japonicus HOM05D001663 ORTHO05D005717 1.0e-194 683.7 477 73.2
FAN08G2783 Fragaria x ananassa HOM05D001663 ORTHO05D005717 2.2e-194 682.6 473 74.4
Duzib041G0602 Durio zibethinus HOM05D001663 ORTHO05D005717 1.1e-193 680.2 480 72.9
Sabra02G0071900 Salix brachista HOM05D001663 ORTHO05D005717 1.2e-192 676.8 496 70.0
Duzib093G0504 Durio zibethinus HOM05D001663 ORTHO05D005717 1.6e-192 676.4 480 72.5
FAN04G0194 Fragaria x ananassa HOM05D001663 ORTHO05D005717 2.1e-192 676.0 475 73.3
Lalb_Chr10g0102081 Lupinus albus HOM05D001663 ORTHO05D005717 2.7e-192 675.6 477 72.5
Gorai.005G092500 Gossypium raimondii HOM05D001663 ORTHO05D005717 7.9e-192 674.1 480 72.1
Gohir.D05G269900 Gossypium hirsutum HOM05D001663 ORTHO05D005717 3.0e-191 672.2 480 72.1
Gorai.009G282600 Gossypium raimondii HOM05D001663 ORTHO05D005717 3.9e-191 671.8 480 72.1
Gohir.A02G075400 Gossypium hirsutum HOM05D001663 ORTHO05D005717 5.7e-190 667.9 480 71.5
Potri.002G090900 Populus trichocarpa HOM05D001663 ORTHO05D005717 2.2e-189 666.0 479 72.0
Lalb_Chr04g0253241 Lupinus albus HOM05D001663 ORTHO05D005717 3.7e-189 665.2 477 71.3
TAR376G0684 Trochodendron aralioides HOM05D001663 ORTHO05D005717 3.7e-189 665.2 479 71.2
Rhsim07G0199300 Rhododendron simsii HOM05D001663 ORTHO05D005717 1.1e-188 663.7 479 73.3
Nn5g28968 Nelumbo nucifera HOM05D001663 ORTHO05D005717 2.4e-188 662.5 480 70.8
GSVIVG01008963001 Vitis vinifera HOM05D001663 ORTHO05D005717 5.3e-188 661.4 480 71.5
vmacro04774 Vaccinium macrocarpon HOM05D001663 ORTHO05D005717 6.9e-188 661.0 516 67.8
Cpa.g.sc1782.1 Carica papaya HOM05D001663 ORTHO05D005717 3.4e-187 658.7 480 70.8
CSS0006833 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 5.9e-187 657.9 478 72.0
MD08G1174500 Malus domestica HOM05D001663 ORTHO05D005717 6.5e-186 654.4 479 71.0
RhsimUnG0073000 Rhododendron simsii HOM05D001663 ORTHO05D005717 6.5e-186 654.4 479 72.9
MD15G1361100 Malus domestica HOM05D001663 ORTHO05D005717 7.2e-185 651.0 480 71.5
Glyma.13G085400 Glycine max HOM05D001663 ORTHO05D005717 1.6e-184 649.8 477 70.0
arahy.Tifrunner.gnm1.ann1.7M6WCL Arachis hypogaea HOM05D001663 ORTHO05D005717 2.7e-184 649.0 477 69.6
TWI12G1423 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 6.1e-184 647.9 481 70.7
Nn1g05239 Nelumbo nucifera HOM05D001663 ORTHO05D005717 3.9e-183 645.2 480 69.2
Gohir.D02G082500 Gossypium hirsutum HOM05D001663 ORTHO05D005717 5.1e-183 644.8 480 69.8
Eucgr.H00930 Eucalyptus grandis HOM05D001663 ORTHO05D005717 2.6e-182 642.5 480 69.4
TWI56G1202 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 5.7e-182 641.3 480 68.5
Hma1.2p1_0529F.1_g173150 Hydrangea macrophylla HOM05D001663 ORTHO05D005717 6.3e-181 637.9 481 69.9
QL12p035556 Quercus lobata HOM05D001663 ORTHO05D005717 6.3e-181 637.9 476 70.6
HanXRQChr05g0162261 Helianthus annuus HOM05D001663 ORTHO05D005717 1.1e-180 637.1 479 68.1
Cc10_g06030 Coffea canephora HOM05D001663 ORTHO05D005717 1.4e-180 636.7 478 68.6
PSO210G6007 Papaver somniferum HOM05D001663 ORTHO05D005717 6.9e-180 634.4 479 67.8
Migut.C00211 Erythranthe guttata HOM05D001663 ORTHO05D005717 1.5e-179 633.3 478 68.8
Nitab4.5_0001915g0140 Nicotiana tabacum HOM05D001663 ORTHO05D005717 1.3e-178 630.2 481 68.2
PSO447G0047 Papaver somniferum HOM05D001663 ORTHO05D005717 2.2e-178 629.4 479 67.2
CiPaw.05G231300 Carya illinoinensis HOM05D001663 ORTHO05D005717 3.8e-178 628.6 478 69.9
PGSC0003DMG400027563 Solanum tuberosum HOM05D001663 ORTHO05D005717 3.8e-178 628.6 485 66.6
CANSAT25G1457 Cannabis sativa HOM05D001663 ORTHO05D005717 1.4e-177 626.7 479 68.7
Nitab4.5_0004952g0050 Nicotiana tabacum HOM05D001663 ORTHO05D005717 1.4e-177 626.7 477 68.6
Sopen04g028600 Solanum pennellii HOM05D001663 ORTHO05D005717 1.4e-177 626.7 485 66.8
CAN.G617.5 Capsicum annuum HOM05D001663 ORTHO05D005717 4.2e-177 625.2 485 66.6
Solyc04g072440.4 Solanum lycopersicum HOM05D001663 ORTHO05D005717 4.2e-177 625.2 485 66.6
EL10Ac8g18308 Beta vulgaris HOM05D001663 ORTHO05D005717 2.0e-174 616.3 476 65.8
RcHm_v2.0_Chr7g0240361 Rosa chinensis HOM05D001663 ORTHO05D005717 3.3e-174 615.5 422 74.6
Aqoxy3G00244 Aquilegia oxysepala HOM05D001663 ORTHO05D005717 7.4e-174 614.4 511 63.4
Haze_00550 Corylus avellana HOM05D001663 ORTHO05D005717 1.1e-172 610.5 477 68.3
ECA246G3782 Erigeron canadensis HOM05D001663 ORTHO05D005717 2.4e-172 609.4 475 65.9
Ah.09g230050 Amaranthus hybridus HOM05D001663 ORTHO05D005717 3.1e-172 609.0 478 66.5
DCAR_003554 Daucus carota HOM05D001663 ORTHO05D005717 5.3e-172 608.2 471 67.9
Glyma.14G167200 Glycine max HOM05D001663 ORTHO05D005717 5.3e-172 608.2 408 74.8
PGR042G1550 Punica granatum HOM05D001663 ORTHO05D005717 9.1e-172 607.4 478 66.5
MSTRG.24955 Avicennia marina HOM05D001663 ORTHO05D005717 2.6e-171 605.9 478 66.7
Cfa015941 Carpinus fangiana HOM05D001663 ORTHO05D005717 1.3e-162 577.0 474 66.2
SalBow7G1241 Salvia bowleyana HOM05D001663 ORTHO05D005717 1.3e-162 577.0 534 59.7
Lsat_1_v5_gn_6_102021 Lactuca sativa HOM05D001663 ORTHO05D005717 3.2e-161 572.4 487 61.6
AUR62033240 Chenopodium quinoa HOM05D001663 ORTHO05D005717 1.2e-160 570.5 423 68.1
CsaV3_2G033570 Cucumis sativus L. HOM05D001663 ORTHO05D005717 3.6e-160 568.9 478 63.8
MELO3C008130.2 Cucumis melo HOM05D001663 ORTHO05D005717 4.7e-160 568.5 477 63.7
MSTRG.947 Avicennia marina HOM05D001663 ORTHO05D005717 1.0e-159 567.4 475 63.4
Sed0003415 Sechium edule HOM05D001663 ORTHO05D005717 8.3e-157 557.8 475 62.7
Psat2g076640 Pisum sativum HOM05D001663 ORTHO05D005717 1.4e-156 557.0 409 71.4
SGA_v2.0_scaffold48G18009 Striga asiatica HOM05D001663 ORTHO05D005717 1.4e-156 557.0 477 61.8
Atru.chr13.1295 Acer truncatum HOM05D001663 ORTHO05D005717 4.1e-156 555.4 376 75.8
FAN13G3230 Fragaria x ananassa HOM05D001663 ORTHO05D005717 9.1e-156 554.3 476 63.2
ClCG11G008030 Citrullus lanatus HOM05D001663 ORTHO05D005717 2.7e-155 552.7 497 61.0
CSS0003227 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 4.5e-155 552.0 376 74.5
Peaxi162Scf00756g00434 Petunia axillaris HOM05D001663 ORTHO05D005717 4.7e-152 542.0 483 59.8
Lj6A263G20 Lonicera japonica HOM05D001663 ORTHO05D005717 7.0e-148 528.1 480 60.4
Hund26324 Selenicereus undatus HOM05D001663 ORTHO05D005717 3.5e-147 525.8 383 70.2
Sc18g0007560 Simmondsia chinensis HOM05D001663 ORTHO05D005717 8.6e-146 521.2 377 68.7
Actinidia29571 Actinidia chinensis HOM05D001663 ORTHO05D005717 3.3e-145 519.2 443 64.8
ATR0564G349 Amborella trichopoda HOM05D001663 ORTHO05D005717 1.7e-138 496.9 484 55.8
Dinv13062 Davidia involucrata HOM05D001663 ORTHO05D005717 8.0e-136 488.0 339 72.0
AUR62021323 Chenopodium quinoa HOM05D001663 ORTHO05D005717 1.3e-133 480.7 477 55.3
Gohir.A05G268300 Gossypium hirsutum HOM05D001663 ORTHO05D005717 5.1e-122 442.2 314 72.3
HPP92_009232 Vanilla planifolia HOM05D001663 ORTHO05D005717 2.8e-120 436.4 376 58.8
MBI02_g34272_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 9.9e-118 427.9 311 70.7
CDE05G2350 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 2.1e-112 410.2 346 62.1
Oeu035400.3 Olea europaea HOM05D001663 ORTHO05D005717 3.6e-112 409.5 810 36.0
unitig_747.g21547 Utricularia gibba HOM05D001663 ORTHO05D005717 2.9e-109 399.8 477 48.6
AL2G38170 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 1.4e-108 397.5 458 49.3
Carub.0002s2479 Capsella rubella HOM05D001663 ORTHO05D005717 5.4e-108 395.6 451 49.9
AT1G77890 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 2.5e-105 386.7 458 48.5
BolC6t40206H Brassica oleracea HOM05D001663 ORTHO05D005717 2.5e-105 386.7 453 49.0
CARHR071380 Cardamine hirsuta HOM05D001663 ORTHO05D005717 9.6e-105 384.8 455 47.9
BraA07t31838Z Brassica rapa HOM05D001663 ORTHO05D005717 1.6e-104 384.0 453 48.8
Sp5g33060 Schrenkiella parvula HOM05D001663 ORTHO05D005717 8.1e-104 381.7 450 48.9
Aa31LG4G7980 Aethionema arabicum HOM05D001663 ORTHO05D005717 3.2e-100 369.8 472 46.2
BcaB03g15913 Brassica carinata HOM05D001663 ORTHO05D005717 6.7e-98 362.1 454 48.0
A07p43160 Brassica napus HOM05D001663 ORTHO05D005717 1.1e-97 361.3 371 53.1
C06p51850 Brassica napus HOM05D001663 ORTHO05D005717 1.9e-97 360.5 372 53.0
Zm00001eb109770 Zea mays HOM05D001663 ORTHO05D005717 1.9e-97 360.5 405 50.6
Zm00001eb327970 Zea mays HOM05D001663 ORTHO05D005717 1.1e-95 354.8 444 47.5
Os07g0626300 Oryza sativa ssp. japonica HOM05D001663 ORTHO05D005717 9.0e-95 351.7 405 49.9
arahy.Tifrunner.gnm1.ann1.8X036G Arachis hypogaea HOM05D001663 ORTHO05D005717 5.5e-92 342.4 247 70.4
VMungo0647G1200 Vigna mungo HOM05D001663 ORTHO05D005717 1.6e-91 340.9 228 74.1
Pp3c5_11170 Physcomitrium patens HOM05D001663 ORTHO05D005717 4.9e-85 319.3 495 42.2
arahy.Tifrunner.gnm1.ann1.ZLN6KV Arachis hypogaea HOM05D001663 ORTHO05D005717 2.1e-83 313.9 240 67.5
Thhalv10018451m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 1.9e-81 307.4 455 44.6
Actinidia33165 Actinidia chinensis HOM05D001663 ORTHO05D005717 3.3e-73 280.0 250 60.0
Mapoly0103s0077 Marchantia polymorpha HOM05D001663 ORTHO05D005717 1.7e-69 267.7 493 36.1
SEGI_08259 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 5.0e-53 213.0 324 43.2
MBI02_g34271_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 8.0e-51 205.7 186 59.1
SEGI_31098 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 2.3e-50 204.1 213 53.5
BcaC08g47627 Brassica carinata HOM05D001663 ORTHO05D005717 8.0e-43 179.1 205 47.3
AagrBONN_evm.TU.Sc2ySwM_344.1096 Anthoceros agrestis HOM05D001663 ORTHO05D005717 8.8e-42 175.6 450 30.4
CBR_g4197 Chara braunii HOM05D001663 ORTHO05D005717 3.8e-37 160.2 510 29.4
Atru.chr13.1296 Acer truncatum HOM05D001663 ORTHO05D005717 2.0e-25 121.3 102 63.7
Actinidia33166 Actinidia chinensis HOM05D001663 ORTHO05D005717 3.0e-21 107.5 106 57.5
Zm00001eb031630 Zea mays HOM05D001663 ORTHO05D005717 4.0e-18 97.1 144 38.9
CDE05G1781 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 3.2e-15 87.4 90 51.1
PRCOL_00005117 Prasinoderma coloniale HOM05D001663 ORTHO05D005717 7.5e-09 66.2 302 25.8
Dinv13063 Davidia involucrata HOM05D001663 ORTHO05D005717 7.8e-06 56.2 59 59.3


User provided reference genes

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