Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g08590 Schrenkiella parvula HOM05D004240 ORTHO05D005082 1.1e-47 193.0 94 100.0
BcaC04g20940 Brassica carinata HOM05D004240 ORTHO05D005082 5.8e-46 187.2 94 95.7
A09p29740 Brassica napus HOM05D004240 ORTHO05D005082 5.8e-46 187.2 94 95.7
C09p37710 Brassica napus HOM05D004240 ORTHO05D005082 5.8e-46 187.2 94 95.7
BolC9t56602H Brassica oleracea HOM05D004240 ORTHO05D005082 5.8e-46 187.2 94 95.7
BraA09t38538Z Brassica rapa HOM05D004240 ORTHO05D005082 5.8e-46 187.2 94 95.7
Thhalv10029093m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 1.4e-44 182.6 94 93.6
BcaB01g01378 Brassica carinata HOM05D004240 ORTHO05D005082 4.2e-44 181.0 94 92.6
BcaC01g04739 Brassica carinata HOM05D004240 ORTHO05D005082 2.1e-43 178.7 94 92.6
C03p34300 Brassica napus HOM05D004240 ORTHO05D005082 2.1e-43 178.7 94 92.6
AL6G41500 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 3.5e-43 177.9 94 91.5
A03p28370 Brassica napus HOM05D004240 ORTHO05D005082 3.9e-42 174.5 90 90.0
BraA03t12042Z Brassica rapa HOM05D004240 ORTHO05D005082 3.9e-42 174.5 90 90.0
BcaB01g02826 Brassica carinata HOM05D004240 ORTHO05D005082 8.7e-42 173.3 94 90.4
BolC3t15739H Brassica oleracea HOM05D004240 ORTHO05D005082 1.1e-41 172.9 94 90.4
Thhalv10028005m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 2.5e-41 171.8 94 89.4
AT5G40080 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 1.3e-40 169.5 91 91.2
AT5G39800 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 1.6e-40 169.1 91 90.1
Carub.0006s2760 Capsella rubella HOM05D004240 ORTHO05D005082 2.8e-40 168.3 94 87.2
Carub.0007s3595 Capsella rubella HOM05D004240 ORTHO05D005082 6.9e-39 163.7 91 87.9
CARHR262430 Cardamine hirsuta HOM05D004240 ORTHO05D005082 1.2e-38 162.9 86 88.4
AL7G50490 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 2.6e-38 161.8 91 87.9
Aa31LG9G14690 Aethionema arabicum HOM05D004240 ORTHO05D005082 3.2e-36 154.8 94 83.0
Manes.18G063900 Manihot esculenta HOM05D004240 ORTHO05D005082 1.2e-35 152.9 94 79.8
PGR031G0804 Punica granatum HOM05D004240 ORTHO05D005082 1.6e-35 152.5 94 76.6
Manes.02G149200 Manihot esculenta HOM05D004240 ORTHO05D005082 2.1e-35 152.1 94 78.7
ClCG09G002640 Citrullus lanatus HOM05D004240 ORTHO05D005082 4.6e-35 151.0 93 76.3
Psat2g132800 Pisum sativum HOM05D004240 ORTHO05D005082 6.0e-35 150.6 91 78.0
Psat4g105040 Pisum sativum HOM05D004240 ORTHO05D005082 6.0e-35 150.6 91 78.0
QL06p048114 Quercus lobata HOM05D004240 ORTHO05D005082 6.0e-35 150.6 93 79.6
FAN15G0929 Fragaria x ananassa HOM05D004240 ORTHO05D005082 7.9e-35 150.2 94 78.7
FAN18G4030 Fragaria x ananassa HOM05D004240 ORTHO05D005082 7.9e-35 150.2 94 78.7
Potri.006G070700 Populus trichocarpa HOM05D004240 ORTHO05D005082 1.0e-34 149.8 94 77.7
THA.LOC104813109 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 1.0e-34 149.8 94 78.7
Ca_06044_v3 Cicer arietinum L. HOM05D004240 ORTHO05D005082 1.3e-34 149.4 94 74.5
MELO3C023395.2 Cucumis melo HOM05D004240 ORTHO05D005082 1.3e-34 149.4 93 75.3
RcHm_v2.0_Chr3g0492081 Rosa chinensis HOM05D004240 ORTHO05D005082 1.3e-34 149.4 94 77.7
Peaxi162Scf00030g02315 Petunia axillaris HOM05D004240 ORTHO05D005082 1.8e-34 149.1 92 76.1
Peaxi162Scf00074g01332 Petunia axillaris HOM05D004240 ORTHO05D005082 1.8e-34 149.1 92 76.1
Sed0017764 Sechium edule HOM05D004240 ORTHO05D005082 1.8e-34 149.1 84 82.1
GSVIVG01009082001 Vitis vinifera HOM05D004240 ORTHO05D005082 1.8e-34 149.1 93 77.4
FvH4_2g10720 Fragaria vesca HOM05D004240 ORTHO05D005082 2.3e-34 148.7 94 77.7
FAN20G0937 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.3e-34 148.7 94 77.7
PGR004G1351 Punica granatum HOM05D004240 ORTHO05D005082 2.3e-34 148.7 94 77.7
Cfa002500 Carpinus fangiana HOM05D004240 ORTHO05D005082 3.0e-34 148.3 94 76.6
FvH4_5g36580 Fragaria vesca HOM05D004240 ORTHO05D005082 3.0e-34 148.3 94 77.7
FAN13G1462 Fragaria x ananassa HOM05D004240 ORTHO05D005082 3.0e-34 148.3 94 77.7
QL12p001007 Quercus lobata HOM05D004240 ORTHO05D005082 3.9e-34 147.9 93 77.4
Sed0022777 Sechium edule HOM05D004240 ORTHO05D005082 3.9e-34 147.9 94 73.4
Cpa.g.sc79.33 Carica papaya HOM05D004240 ORTHO05D005082 5.1e-34 147.5 94 76.6
RcHm_v2.0_Chr7g0242281 Rosa chinensis HOM05D004240 ORTHO05D005082 5.1e-34 147.5 94 76.6
Haze_24725 Corylus avellana HOM05D004240 ORTHO05D005082 6.7e-34 147.1 94 76.6
CsaV3_7G032690 Cucumis sativus L. HOM05D004240 ORTHO05D005082 6.7e-34 147.1 93 74.2
FAN24G1588 Fragaria x ananassa HOM05D004240 ORTHO05D005082 6.7e-34 147.1 94 76.6
Sabra06G0052600 Salix brachista HOM05D004240 ORTHO05D005082 6.7e-34 147.1 93 76.3
Glyma.04G099100 Glycine max HOM05D004240 ORTHO05D005082 8.7e-34 146.7 91 75.8
Gohir.A06G033500 Gossypium hirsutum HOM05D004240 ORTHO05D005082 8.7e-34 146.7 94 76.6
Gohir.D06G034400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 8.7e-34 146.7 94 76.6
Gorai.010G037900 Gossypium raimondii HOM05D004240 ORTHO05D005082 8.7e-34 146.7 94 76.6
MD02G1257900 Malus domestica HOM05D004240 ORTHO05D005082 8.7e-34 146.7 94 77.7
PSO700G0162 Papaver somniferum HOM05D004240 ORTHO05D005082 8.7e-34 146.7 94 77.7
CiPaw.04G103700 Carya illinoinensis HOM05D004240 ORTHO05D005082 1.1e-33 146.4 94 75.5
Phvul.009G033000 Phaseolus vulgaris HOM05D004240 ORTHO05D005082 1.1e-33 146.4 91 75.8
THA.LOC104816621 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 1.1e-33 146.4 95 76.8
DCAR_014024 Daucus carota HOM05D004240 ORTHO05D005082 1.5e-33 146.0 94 74.5
Eucgr.F00376 Eucalyptus grandis HOM05D004240 ORTHO05D005082 1.5e-33 146.0 94 75.5
FAN04G0949 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.5e-33 146.0 94 75.5
Sc20g0000280 Simmondsia chinensis HOM05D004240 ORTHO05D005082 1.9e-33 145.6 94 73.4
TWI36G0317 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 1.9e-33 145.6 94 76.6
Rhsim10G0001600 Rhododendron simsii HOM05D004240 ORTHO05D005082 2.5e-33 145.2 94 74.5
AUR62004912 Chenopodium quinoa HOM05D004240 ORTHO05D005082 3.3e-33 144.8 92 76.1
Hma1.2p1_1613F.1_g293659 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 3.3e-33 144.8 91 73.6
CSS0016123 Camellia sinensis var. sinensis HOM05D004240 ORTHO05D005082 4.3e-33 144.4 93 72.0
DCAR_010173 Daucus carota HOM05D004240 ORTHO05D005082 4.3e-33 144.4 94 74.5
Rhsim02G0249800 Rhododendron simsii HOM05D004240 ORTHO05D005082 4.3e-33 144.4 94 74.5
Solyc04g074690.3 Solanum lycopersicum HOM05D004240 ORTHO05D005082 4.3e-33 144.4 93 74.2
Sopen04g029660 Solanum pennellii HOM05D004240 ORTHO05D005082 4.3e-33 144.4 93 74.2
MD08G1188400 Malus domestica HOM05D004240 ORTHO05D005082 5.6e-33 144.1 94 76.6
Thecc.08G102200 Theobroma cacao HOM05D004240 ORTHO05D005082 5.6e-33 144.1 94 75.5
TAR628G1673 Trochodendron aralioides HOM05D004240 ORTHO05D005082 5.6e-33 144.1 94 74.5
vmacro18578 Vaccinium macrocarpon HOM05D004240 ORTHO05D005082 5.6e-33 144.1 94 73.4
Aqoxy2G03827 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 7.4e-33 143.7 92 73.9
Cc06_g04150 Coffea canephora HOM05D004240 ORTHO05D005082 7.4e-33 143.7 95 73.7
Dinv08862 Davidia involucrata HOM05D004240 ORTHO05D005082 7.4e-33 143.7 94 74.5
FAN08G1894 Fragaria x ananassa HOM05D004240 ORTHO05D005082 7.4e-33 143.7 82 80.5
Glyma.06G100800 Glycine max HOM05D004240 ORTHO05D005082 7.4e-33 143.7 83 79.5
Potri.005G161600 Populus trichocarpa HOM05D004240 ORTHO05D005082 9.6e-33 143.3 94 73.4
Medtr5g045910 Medicago truncatula HOM05D000029 ORTHO05D002519 1.3e-32 142.9 93 77.4
Nn1g05456 Nelumbo nucifera HOM05D004240 ORTHO05D005082 1.3e-32 142.9 94 74.5
PSO447G0232 Papaver somniferum HOM05D004240 ORTHO05D005082 1.3e-32 142.9 94 75.5
COL.COLO4_12008 Corchorus olitorius HOM05D004240 ORTHO05D005082 1.6e-32 142.5 94 73.4
PSO541G3534 Papaver somniferum HOM05D004240 ORTHO05D005082 1.6e-32 142.5 94 73.4
PSO675G3208 Papaver somniferum HOM05D004240 ORTHO05D005082 1.6e-32 142.5 94 73.4
Rhsim08G0013500 Rhododendron simsii HOM05D004240 ORTHO05D005082 1.6e-32 142.5 94 73.4
unitig_32.g11785 Utricularia gibba HOM05D004240 ORTHO05D005082 1.6e-32 142.5 81 81.5
Prupe.1G522900 Prunus persica HOM05D004240 ORTHO05D005082 2.1e-32 142.1 94 75.5
SalBow8G1434 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.1e-32 142.1 86 73.3
SalBow8G1852 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.1e-32 142.1 86 73.3
Ciclev10013208m.g Citrus clementina HOM05D004240 ORTHO05D005082 2.8e-32 141.7 93 75.3
Prupe.6G102500 Prunus persica HOM05D004240 ORTHO05D005082 2.8e-32 141.7 92 73.9
Hund06956 Selenicereus undatus HOM05D004240 ORTHO05D005082 2.8e-32 141.7 94 73.4
TAR381G0524 Trochodendron aralioides HOM05D004240 ORTHO05D005082 2.8e-32 141.7 94 74.5
arahy.Tifrunner.gnm1.ann1.29DKEH Arachis hypogaea HOM05D004240 ORTHO05D005082 3.7e-32 141.4 94 73.4
AUR62011808 Chenopodium quinoa HOM05D004240 ORTHO05D005082 3.7e-32 141.4 92 73.9
TWI12G0685 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 3.7e-32 141.4 94 73.4
arahy.Tifrunner.gnm1.ann1.US6JCC Arachis hypogaea HOM05D004240 ORTHO05D005082 4.8e-32 141.0 88 75.0
Dinv44804 Davidia involucrata HOM05D004240 ORTHO05D005082 6.2e-32 140.6 94 72.3
SalBow1G5590 Salvia bowleyana HOM05D004240 ORTHO05D005082 6.2e-32 140.6 81 77.8
arahy.Tifrunner.gnm1.ann1.CGL9LR Arachis hypogaea HOM05D004240 ORTHO05D005082 8.1e-32 140.2 94 73.4
arahy.Tifrunner.gnm1.ann1.LFKE78 Arachis hypogaea HOM05D004240 ORTHO05D005082 8.1e-32 140.2 94 73.4
Ah.06g187980 Amaranthus hybridus HOM05D004240 ORTHO05D005082 1.1e-31 139.8 90 71.1
CANSAT01G1074 Cannabis sativa HOM05D004240 ORTHO05D005082 1.1e-31 139.8 94 72.3
Duzib093G0975 Durio zibethinus HOM05D004240 ORTHO05D005082 1.1e-31 139.8 94 73.4
Migut.H02239 Erythranthe guttata HOM05D004240 ORTHO05D005082 1.4e-31 139.4 82 78.0
CDE10G0460 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 2.6e-30 135.2 89 71.9
ECA247G1074 Erigeron canadensis HOM05D004240 ORTHO05D005082 3.4e-30 134.8 94 68.1
ECA246G1644 Erigeron canadensis HOM05D004240 ORTHO05D005082 4.5e-30 134.4 94 69.1
Lsat_1_v5_gn_6_104280 Lactuca sativa HOM05D004240 ORTHO05D005082 7.6e-30 133.7 89 70.8
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 7.6e-30 133.7 82 75.6
CDE10G1133 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 9.9e-30 133.3 89 70.8
Lalb_Chr23g0270361 Lupinus albus HOM05D004240 ORTHO05D005082 2.2e-29 132.1 90 66.7
HanXRQChr10g0278161 Helianthus annuus HOM05D004240 ORTHO05D005082 3.8e-29 131.3 94 70.2
Zm00001eb211130 Zea mays HOM05D004240 ORTHO05D005082 4.9e-29 131.0 94 67.0
SalBow1G7711 Salvia bowleyana HOM05D004240 ORTHO05D005082 8.4e-29 130.2 90 68.9
HanXRQChr05g0163111 Helianthus annuus HOM05D004240 ORTHO05D005082 7.1e-28 127.1 93 68.8
HPP92_003085 Vanilla planifolia HOM05D000111 ORTHO05D000134 1.6e-27 125.9 73 78.1
Peaxi162Scf00701g00514 Petunia axillaris HOM05D004240 ORTHO05D005082 1.3e-26 122.9 94 62.8
Ah.06g192140 Amaranthus hybridus HOM05D004240 ORTHO05D005082 1.8e-26 122.5 122 54.1
Oeu048963.1 Olea europaea HOM05D004240 ORTHO05D005082 3.0e-26 121.7 83 67.5
Sabra05G0122300 Salix brachista HOM05D004240 ORTHO05D005082 3.9e-26 121.3 71 78.9
Oeu009430.2 Olea europaea HOM05D004240 ORTHO05D005082 8.7e-26 120.2 70 78.6
CAN.G857.13 Capsicum annuum HOM05D004240 ORTHO05D005082 1.9e-25 119.0 71 77.5
Atru.chr8.235 Acer truncatum HOM05D004240 ORTHO05D005082 2.5e-25 118.6 70 80.0
Nn5g30001 Nelumbo nucifera HOM05D004240 ORTHO05D005082 2.5e-25 118.6 94 64.9
EL10Ac6g15351 Beta vulgaris HOM05D004240 ORTHO05D005082 5.6e-25 117.5 70 78.6
AUR62041013 Chenopodium quinoa HOM05D004240 ORTHO05D005082 5.6e-25 117.5 71 77.5
Nitab4.5_0000786g0040 Nicotiana tabacum HOM05D004240 ORTHO05D005082 5.6e-25 117.5 71 76.1
Duzib041G0743 Durio zibethinus HOM05D004240 ORTHO05D005082 7.4e-25 117.1 70 77.1
Nitab4.5_0003599g0030 Nicotiana tabacum HOM05D004240 ORTHO05D005082 7.4e-25 117.1 70 77.1
PGSC0003DMG400030836 Solanum tuberosum HOM05D004240 ORTHO05D005082 7.4e-25 117.1 70 77.1
Nitab4.5_0002632g0100 Nicotiana tabacum HOM05D004240 ORTHO05D005082 6.2e-24 114.0 117 53.0
AUR62043370 Chenopodium quinoa HOM05D004240 ORTHO05D005082 4.5e-22 107.8 71 71.8
Aqoxy2G00790 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 1.7e-21 105.9 71 71.8
Zm00001eb032040 Zea mays HOM05D004240 ORTHO05D005082 8.4e-21 103.6 96 57.3
CAN.G900.47 Capsicum annuum HOM05D004240 ORTHO05D005082 1.1e-20 103.2 68 67.6
Atru.chr13.1119 Acer truncatum HOM05D004240 ORTHO05D005082 2.7e-19 98.6 70 71.4
Gohir.D05G226400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 3.5e-19 98.2 96 55.2
Actinidia06540 Actinidia chinensis HOM05D004240 ORTHO05D005082 6.0e-19 97.4 61 73.8
Cc03_g14470 Coffea canephora HOM05D004240 ORTHO05D005082 1.0e-18 96.7 71 63.4
Mapoly0032s0009 Marchantia polymorpha HOM05D004240 ORTHO05D005082 1.5e-17 92.8 90 51.1
AT4G09012 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 1.9e-17 92.4 48 91.7
Pp3c24_110 Physcomitrium patens HOM05D004240 ORTHO05D005082 3.3e-17 91.7 84 52.4
Gorai.009G234000 Gossypium raimondii HOM05D004240 ORTHO05D005082 2.4e-15 85.5 92 55.4
SalBow1G1735 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.0e-14 82.4 51 70.6
SalBow1G5084 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.0e-14 82.4 51 70.6
SalBow1G6918 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.0e-14 82.4 51 70.6
SalBow1G8490 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.0e-14 82.4 51 70.6
Nitab4.5_0000101g0440 Nicotiana tabacum HOM05D004240 ORTHO05D005082 4.5e-14 81.3 99 47.5
SalBow1G3565 Salvia bowleyana HOM05D004240 ORTHO05D005082 5.9e-14 80.9 49 73.5
Hma1.2p1_1148F.1_g261590 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 1.4e-12 76.3 49 73.5
SalBow1G1053 Salvia bowleyana HOM05D004240 ORTHO05D005082 5.5e-12 74.3 47 66.0
SalBow5G4864 Salvia bowleyana HOM05D004240 ORTHO05D005082 7.2e-12 73.9 49 67.3
AagrBONN_evm.TU.Sc2ySwM_368.1442 Anthoceros agrestis HOM05D004240 ORTHO05D005082 9.4e-12 73.6 63 52.4
PRCOL_00003521 Prasinoderma coloniale HOM05D004240 ORTHO05D005082 1.4e-10 69.7 56 57.1
HanXRQChr02g0058081 Helianthus annuus HOM05D004240 ORTHO05D005082 4.3e-09 64.7 53 56.6
MBI04_g21152_MAGBIO Magnolia biondii HOM05D004240 ORTHO05D005082 4.1e-07 58.2 42 64.3


User provided reference genes

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