Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g08080 Schrenkiella parvula HOM05D004624 ORTHO05D005357 8.2e-29 129.8 70 100.0
AL6G43100 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 1.7e-26 122.1 70 91.4
AT4G09550 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 2.2e-26 121.7 69 91.3
CARHR260420 Cardamine hirsuta HOM05D004624 ORTHO05D005357 6.5e-26 120.2 70 90.0
Carub.0006s2800 Capsella rubella HOM05D004624 ORTHO05D005357 5.5e-25 117.1 70 88.6
THA.LOC109116606 Tarenaya hassleriana HOM05D004624 ORTHO05D005357 4.4e-22 107.5 63 88.9
Aa31LG4G10460 Aethionema arabicum HOM05D004624 ORTHO05D005357 1.7e-21 105.5 67 79.1
Thhalv10019414m.g Eutrema salsugineum HOM05D004624 ORTHO05D005357 1.4e-20 102.4 59 89.8
BcaB03g15084 Brassica carinata HOM05D004624 ORTHO05D005357 1.8e-20 102.1 59 89.8
Ah.13g077180 Amaranthus hybridus HOM05D004624 ORTHO05D005357 2.4e-20 101.7 66 80.3
BcaB03g15728 Brassica carinata HOM05D004624 ORTHO05D005357 3.1e-20 101.3 59 88.1
C06p33840 Brassica napus HOM05D004624 ORTHO05D005357 3.1e-20 101.3 59 88.1
BraA07t30607Z Brassica rapa HOM05D004624 ORTHO05D005357 4.1e-20 100.9 59 88.1
AUR62018375 Chenopodium quinoa HOM05D004624 ORTHO05D005357 5.3e-20 100.5 63 82.5
PGR142G2854 Punica granatum HOM05D004624 ORTHO05D005357 5.3e-20 100.5 70 78.6
Sp5g28970 Schrenkiella parvula HOM05D004624 ORTHO05D005357 6.9e-20 100.1 59 86.4
arahy.Tifrunner.gnm1.ann1.Q8D3CZ Arachis hypogaea HOM05D004624 ORTHO05D005357 9.1e-20 99.8 69 75.4
vmacro08998 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 9.1e-20 99.8 68 77.9
arahy.Tifrunner.gnm1.ann1.QE2DSJ Arachis hypogaea HOM05D004624 ORTHO05D005357 1.2e-19 99.4 69 76.8
BcaC08g46798 Brassica carinata HOM05D004624 ORTHO05D005357 1.2e-19 99.4 59 86.4
C06p47930 Brassica napus HOM05D004624 ORTHO05D005357 1.2e-19 99.4 59 86.4
BolC6t39828H Brassica oleracea HOM05D004624 ORTHO05D005357 1.2e-19 99.4 59 86.4
BraA07t31513Z Brassica rapa HOM05D004624 ORTHO05D005357 1.2e-19 99.4 59 86.4
BcaC08g45622 Brassica carinata HOM05D004624 ORTHO05D005357 1.5e-19 99.0 59 86.4
Carub.0002s2054 Capsella rubella HOM05D004624 ORTHO05D005357 1.5e-19 99.0 65 78.5
AUR62030290 Chenopodium quinoa HOM05D004624 ORTHO05D005357 1.5e-19 99.0 68 77.9
Cc03_g11260 Coffea canephora HOM05D004624 ORTHO05D005357 1.5e-19 99.0 69 73.9
Lalb_Chr19g0128161 Lupinus albus HOM05D004624 ORTHO05D005357 1.5e-19 99.0 71 76.1
CSS0023921 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 2.0e-19 98.6 69 76.8
CSS0026932 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 2.0e-19 98.6 69 76.8
MD03G1113900 Malus domestica HOM05D004624 ORTHO05D005357 2.0e-19 98.6 61 78.7
AL2G33600 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 2.6e-19 98.2 67 79.1
AT1G73790 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 2.6e-19 98.2 67 79.1
COL.COLO4_05868 Corchorus olitorius HOM05D004624 ORTHO05D005357 2.6e-19 98.2 69 75.4
DCAR_020589 Daucus carota HOM05D004624 ORTHO05D005357 3.4e-19 97.8 69 78.3
Glyma.01G100100 Glycine max HOM05D004624 ORTHO05D005357 3.4e-19 97.8 71 74.6
Glyma.03G068900 Glycine max HOM05D004624 ORTHO05D005357 3.4e-19 97.8 71 74.6
Gorai.001G127500 Gossypium raimondii HOM05D004624 ORTHO05D005357 3.4e-19 97.8 69 72.5
Gorai.008G288400 Gossypium raimondii HOM05D004624 ORTHO05D005357 3.4e-19 97.8 69 73.9
HanXRQChr11g0352301 Helianthus annuus HOM05D004624 ORTHO05D005357 3.4e-19 97.8 69 75.4
vmacro17426 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 4.5e-19 97.4 69 75.4
GSVIVG01025772001 Vitis vinifera HOM05D004624 ORTHO05D005357 4.5e-19 97.4 70 77.1
Atru.chr12.1276 Acer truncatum HOM05D004624 ORTHO05D005357 5.9e-19 97.1 71 76.1
CSS0035187 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 5.9e-19 97.1 69 76.8
Cpa.g.sc116.84 Carica papaya HOM05D004624 ORTHO05D005357 5.9e-19 97.1 68 73.5
Cfa010947 Carpinus fangiana HOM05D004624 ORTHO05D005357 5.9e-19 97.1 58 84.5
Gohir.D07G118600 Gossypium hirsutum HOM05D004624 ORTHO05D005357 5.9e-19 97.1 69 72.5
Psat0s1206g0080 Pisum sativum HOM05D004624 ORTHO05D005357 5.9e-19 97.1 72 70.8
MELO3C008583.2 Cucumis melo HOM05D004624 ORTHO05D005357 7.7e-19 96.7 69 72.5
Lj1g0004051 Lotus japonicus HOM05D004624 ORTHO05D005357 7.7e-19 96.7 71 73.2
Lalb_Chr19g0128151 Lupinus albus HOM05D004624 ORTHO05D005357 7.7e-19 96.7 71 73.2
Sc13g0000990 Simmondsia chinensis HOM05D004624 ORTHO05D005357 7.7e-19 96.7 72 70.8
Thecc.03G049000 Theobroma cacao HOM05D004624 ORTHO05D005357 7.7e-19 96.7 69 73.9
Ciclev10010500m.g Citrus clementina HOM05D004624 ORTHO05D005357 1.0e-18 96.3 67 73.1
Gohir.A07G114500 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.0e-18 96.3 69 72.5
Gohir.D12G268300 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.0e-18 96.3 69 72.5
Medtr2g008230 Medicago truncatula HOM05D004624 ORTHO05D005357 1.0e-18 96.3 72 70.8
Medtr4g124060 Medicago truncatula HOM05D004624 ORTHO05D005357 1.0e-18 96.3 72 70.8
Eucgr.K01650 Eucalyptus grandis HOM05D004624 ORTHO05D005357 1.3e-18 95.9 58 82.8
Manes.10G062600 Manihot esculenta HOM05D004624 ORTHO05D005357 1.3e-18 95.9 70 74.3
PSO675G0528 Papaver somniferum HOM05D004624 ORTHO05D005357 1.3e-18 95.9 67 74.6
Potri.006G035900 Populus trichocarpa HOM05D004624 ORTHO05D005357 1.3e-18 95.9 68 72.1
Rhsim13G0121200 Rhododendron simsii HOM05D004624 ORTHO05D005357 1.3e-18 95.9 69 72.5
Sabra16G0036900 Salix brachista HOM05D004624 ORTHO05D005357 1.3e-18 95.9 68 75.0
PGSC0003DMG400026480 Solanum tuberosum HOM05D004624 ORTHO05D005357 1.3e-18 95.9 67 74.6
TPR.G12609 Trifolium pratense HOM05D004624 ORTHO05D005357 1.3e-18 95.9 64 71.9
CARHR066880 Cardamine hirsuta HOM05D004624 ORTHO05D005357 1.7e-18 95.5 67 77.6
CiPaw.10G042300 Carya illinoinensis HOM05D004624 ORTHO05D005357 1.7e-18 95.5 69 72.5
Duzib205G0906 Durio zibethinus HOM05D004624 ORTHO05D005357 1.7e-18 95.5 69 73.9
ECA248G3900 Erigeron canadensis HOM05D004624 ORTHO05D005357 1.7e-18 95.5 71 73.2
Nitab4.5_0000021g0900 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.7e-18 95.5 72 72.2
PSO541G4755 Papaver somniferum HOM05D004624 ORTHO05D005357 1.7e-18 95.5 67 74.6
Potri.016G034200 Populus trichocarpa HOM05D004624 ORTHO05D005357 1.7e-18 95.5 63 76.2
GSVIVG01021751001 Vitis vinifera HOM05D004624 ORTHO05D005357 1.7e-18 95.5 58 82.8
CsaV3_2G010390 Cucumis sativus L. HOM05D004624 ORTHO05D005357 2.2e-18 95.1 66 74.2
Dinv15634 Davidia involucrata HOM05D004624 ORTHO05D005357 2.2e-18 95.1 68 75.0
Aqoxy3G00212 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 2.9e-18 94.7 69 73.9
CANSAT78G0048 Cannabis sativa HOM05D004624 ORTHO05D005357 2.9e-18 94.7 66 72.7
CANSAT78G2147 Cannabis sativa HOM05D004624 ORTHO05D005357 2.9e-18 94.7 66 72.7
ECA238G3634 Erigeron canadensis HOM05D000185 ORTHO05D000105 2.9e-18 94.7 68 69.1
Nn7g37680 Nelumbo nucifera HOM05D004624 ORTHO05D005357 2.9e-18 94.7 66 75.8
Peaxi162Scf00516g00035 Petunia axillaris HOM05D004624 ORTHO05D005357 2.9e-18 94.7 73 71.2
TWI53G0657 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 2.9e-18 94.7 69 73.9
DCAR_028787 Daucus carota HOM05D004624 ORTHO05D005357 3.8e-18 94.4 58 84.5
Hma1.2p1_0223F.1_g094210 Hydrangea macrophylla HOM05D004624 ORTHO05D005357 3.8e-18 94.4 69 71.0
Prupe.8G075600 Prunus persica HOM05D004624 ORTHO05D005357 3.8e-18 94.4 61 77.0
Sabra06G0024000 Salix brachista HOM05D004624 ORTHO05D005357 3.8e-18 94.4 68 70.6
Sed0025002 Sechium edule HOM05D004624 ORTHO05D005357 3.8e-18 94.4 65 73.8
TWI74G0338 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 3.8e-18 94.4 58 82.8
Ca_07684_v3 Cicer arietinum L. HOM05D004624 ORTHO05D005357 5.0e-18 94.0 61 77.0
Phvul.001G120800 Phaseolus vulgaris HOM05D004624 ORTHO05D005357 5.0e-18 94.0 68 72.1
QL07p012089 Quercus lobata HOM05D004624 ORTHO05D005357 5.0e-18 94.0 58 82.8
TPR.G16719 Trifolium pratense HOM05D004624 ORTHO05D005357 5.0e-18 94.0 64 70.3
Haze_02997 Corylus avellana HOM05D004624 ORTHO05D005357 6.5e-18 93.6 72 70.8
Migut.J01633 Erythranthe guttata HOM05D004624 ORTHO05D005357 6.5e-18 93.6 64 71.9
FvH4_5g29300 Fragaria vesca HOM05D004624 ORTHO05D005357 6.5e-18 93.6 61 77.0
FAN13G0550 Fragaria x ananassa HOM05D004624 ORTHO05D005357 6.5e-18 93.6 61 77.0
FAN18G4513 Fragaria x ananassa HOM05D004624 ORTHO05D005357 6.5e-18 93.6 61 77.0
Cfa019982 Carpinus fangiana HOM05D004624 ORTHO05D005357 8.5e-18 93.2 69 68.1
Lj4g0019310 Lotus japonicus HOM05D004624 ORTHO05D005357 8.5e-18 93.2 71 71.8
Nitab4.5_0003447g0020 Nicotiana tabacum HOM05D004624 ORTHO05D005357 8.5e-18 93.2 59 79.7
Rhsim04G0113600 Rhododendron simsii HOM05D004624 ORTHO05D005357 8.5e-18 93.2 66 74.2
TAR633G0121 Trochodendron aralioides HOM05D004624 ORTHO05D005357 8.5e-18 93.2 69 68.1
COL.COLO4_37401 Corchorus olitorius HOM05D004624 ORTHO05D005357 1.1e-17 92.8 59 79.7
Haze_20251 Corylus avellana HOM05D004624 ORTHO05D005357 1.1e-17 92.8 69 68.1
PSO063G3723 Papaver somniferum HOM05D004624 ORTHO05D005357 1.1e-17 92.8 67 73.1
RcHm_v2.0_Chr1g0330241 Rosa chinensis HOM05D004624 ORTHO05D005357 1.4e-17 92.4 61 73.8
RcHm_v2.0_Chr7g0222161 Rosa chinensis HOM05D004624 ORTHO05D005357 1.4e-17 92.4 61 75.4
Sopen03g028160 Solanum pennellii HOM05D004624 ORTHO05D005357 1.4e-17 92.4 69 72.5
Nitab4.5_0002193g0050 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.9e-17 92.0 71 71.8
Actinidia05484 Actinidia chinensis HOM05D004624 ORTHO05D005357 2.5e-17 91.7 68 73.5
ClCG11G007400 Citrullus lanatus HOM05D004624 ORTHO05D005357 2.5e-17 91.7 69 71.0
Sabra16G0054100 Salix brachista HOM05D004624 ORTHO05D005357 2.5e-17 91.7 63 76.2
Thecc.05G198400 Theobroma cacao HOM05D004624 ORTHO05D005357 4.2e-17 90.9 59 78.0
CAN.G732.25 Capsicum annuum HOM05D004624 ORTHO05D005357 5.5e-17 90.5 57 77.2
FAN08G1983 Fragaria x ananassa HOM05D004624 ORTHO05D005357 5.5e-17 90.5 61 75.4
Sopen06g029060 Solanum pennellii HOM05D004624 ORTHO05D005357 5.5e-17 90.5 73 68.5
Aqoxy3G02929 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 7.2e-17 90.1 68 70.6
Manes.15G024800 Manihot esculenta HOM05D004624 ORTHO05D005357 7.2e-17 90.1 69 69.6
Nitab4.5_0000645g0040 Nicotiana tabacum HOM05D004624 ORTHO05D005357 7.2e-17 90.1 71 69.0
Peaxi162Scf00815g00038 Petunia axillaris HOM05D004624 ORTHO05D005357 7.2e-17 90.1 71 67.6
CAN.G65.122 Capsicum annuum HOM05D004624 ORTHO05D005357 9.4e-17 89.7 71 70.4
Nitab4.5_0006185g0060 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.2e-16 89.4 71 67.6
Cpa.g.sc883.1 Carica papaya HOM05D004624 ORTHO05D005357 1.6e-16 89.0 58 77.6
Nitab4.5_0006270g0030 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.6e-16 89.0 71 70.4
SHI11762 Sapria himalayana HOM05D004624 ORTHO05D005357 1.6e-16 89.0 67 70.1
Migut.J01336 Erythranthe guttata HOM05D004624 ORTHO05D005357 2.1e-16 88.6 59 74.6
Migut.J01335 Erythranthe guttata HOM05D004624 ORTHO05D005357 2.7e-16 88.2 59 74.6
QL04p073121 Quercus lobata HOM05D004624 ORTHO05D005357 3.6e-16 87.8 55 81.8
CDE05G2943 Ceratophyllum demersum HOM05D004624 ORTHO05D005357 6.1e-16 87.0 69 65.2
MBI17_g08328_MAGBIO Magnolia biondii HOM05D004624 ORTHO05D005357 8.0e-16 86.7 54 81.5
TAR627G0533 Trochodendron aralioides HOM05D004624 ORTHO05D005357 1.5e-14 82.4 66 65.2
EL10Ac4g09929 Beta vulgaris HOM05D004624 ORTHO05D005357 4.4e-14 80.9 55 74.5
Pp3c13_4560 Physcomitrium patens HOM05D004624 ORTHO05D005357 5.7e-14 80.5 61 70.5
Os03g0435900 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 7.4e-14 80.1 68 61.8
Os11g0368172 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 7.4e-14 80.1 68 61.8
Os03g0824000 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 9.7e-14 79.7 68 60.3
unitig_746.g26892 Utricularia gibba HOM05D004624 ORTHO05D005357 2.2e-13 78.6 57 66.7
MD11G1133700 Malus domestica HOM05D004624 ORTHO05D005357 6.3e-13 77.0 43 88.4
Zm00001eb062930 Zea mays HOM05D004624 ORTHO05D005357 6.3e-13 77.0 65 64.6
Atru.chr12.1164 Acer truncatum HOM05D004624 ORTHO05D005357 1.8e-12 75.5 51 78.4
Pp3c12_8260 Physcomitrium patens HOM05D004624 ORTHO05D005357 2.4e-12 75.1 67 62.7
AagrBONN_evm.TU.Sc2ySwM_340.447 Anthoceros agrestis HOM05D004624 ORTHO05D005357 3.1e-12 74.7 59 61.0
PRCOL_00005147 Prasinoderma coloniale HOM05D004624 ORTHO05D005357 4.1e-12 74.3 58 63.8
SalBow6G5026 Salvia bowleyana HOM05D004624 ORTHO05D005357 1.6e-11 72.4 52 73.1
FvH4_2g13790 Fragaria vesca HOM05D004624 ORTHO05D005357 4.5e-11 70.9 56 66.1
FAN24G0569 Fragaria x ananassa HOM05D004624 ORTHO05D005357 4.5e-11 70.9 56 66.1
Solyc03g097400.1 Solanum lycopersicum HOM05D004624 ORTHO05D005357 5.9e-11 70.5 49 73.5
CBR_g23420 Chara braunii HOM05D004624 ORTHO05D005357 7.7e-11 70.1 59 57.6
SMO172G0211 Selaginella moellendorffii HOM05D004624 ORTHO05D005357 7.7e-11 70.1 51 68.6
HPP92_018529 Vanilla planifolia HOM05D004624 ORTHO05D005357 5.0e-10 67.4 53 58.5
Mapoly0109s0047 Marchantia polymorpha HOM05D004624 ORTHO05D005357 8.5e-10 66.6 66 53.0
MCO02G029 Micromonas commoda HOM05D004624 ORTHO05D005357 1.9e-09 65.5 59 54.2
Solyc06g072690.3 Solanum lycopersicum HOM05D004624 ORTHO05D005357 4.2e-09 64.3 55 65.5
Lsat_1_v5_gn_1_43120 Lactuca sativa HOM05D004624 ORTHO05D005357 5.2e-07 57.4 32 87.5
Cre14.g610000 Chlamydomonas reinhardtii HOM05D004624 ORTHO05D005357 1.5e-06 55.8 48 52.1


User provided reference genes

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