Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g07600 Schrenkiella parvula HOM05D000786 ORTHO05D006216 7.3e-43 176.8 88 100.0
AT4G09890 Arabidopsis thaliana HOM05D000786 ORTHO05D006216 4.0e-41 171.0 88 96.6
AL6G43590 Arabidopsis lyrata HOM05D000786 ORTHO05D006216 9.0e-41 169.9 88 95.5
Carub.0006s2842 Capsella rubella HOM05D000786 ORTHO05D006216 9.0e-41 169.9 88 95.5
BcaC04g20992 Brassica carinata HOM05D000786 ORTHO05D006216 1.3e-39 166.0 88 93.2
BcaB01g01430 Brassica carinata HOM05D000786 ORTHO05D006216 2.2e-39 165.2 88 93.2
CARHR260880 Cardamine hirsuta HOM05D000786 ORTHO05D006216 2.9e-39 164.9 88 92.0
Thhalv10029196m.g Eutrema salsugineum HOM05D000786 ORTHO05D006216 1.4e-38 162.5 88 89.8
Aa31LG9G12090 Aethionema arabicum HOM05D000786 ORTHO05D006216 2.1e-34 148.7 88 86.4
THA.LOC109116395 Tarenaya hassleriana HOM05D000786 ORTHO05D006216 1.1e-27 126.3 87 77.0
Cpa.g.sc49.82 Carica papaya HOM05D000786 ORTHO05D006216 2.3e-20 102.1 94 57.4
Manes.18G094200 Manihot esculenta HOM05D000786 ORTHO05D006216 3.0e-20 101.7 95 61.1
CANSAT25G1840 Cannabis sativa HOM05D000786 ORTHO05D006216 1.3e-18 96.3 91 57.1
Duzib116G0195 Durio zibethinus HOM05D000786 ORTHO05D006216 3.7e-18 94.7 94 58.5
Potri.005G195800 Populus trichocarpa HOM05D000786 ORTHO05D006216 4.8e-18 94.4 94 57.4
RcHm_v2.0_Chr6g0274371 Rosa chinensis HOM05D000786 ORTHO05D006216 2.4e-17 92.0 94 57.4
QL02p038248 Quercus lobata HOM05D000786 ORTHO05D006216 3.1e-17 91.7 94 57.4
Thecc.08G158200 Theobroma cacao HOM05D000786 ORTHO05D006216 4.1e-17 91.3 94 56.4
Potri.002G065200 Populus trichocarpa HOM05D000786 ORTHO05D006216 6.9e-17 90.5 83 60.2
Cfa018290 Carpinus fangiana HOM05D000786 ORTHO05D006216 1.5e-16 89.4 94 55.3
COL.COLO4_03364 Corchorus olitorius HOM05D000786 ORTHO05D006216 1.5e-16 89.4 83 59.0
Haze_17797 Corylus avellana HOM05D000786 ORTHO05D006216 1.5e-16 89.4 94 55.3
Atru.chr13.2022 Acer truncatum HOM05D000786 ORTHO05D006216 2.6e-16 88.6 83 59.0
Aqoxy5G02027 Aquilegia oxysepala HOM05D000786 ORTHO05D006216 3.4e-16 88.2 88 54.5
Aqoxy5G02029 Aquilegia oxysepala HOM05D000786 ORTHO05D006216 3.4e-16 88.2 88 54.5
Ciclev10003573m.g Citrus clementina HOM05D000786 ORTHO05D006216 3.4e-16 88.2 83 61.4
Dinv41045 Davidia involucrata HOM05D000786 ORTHO05D006216 3.4e-16 88.2 89 53.9
FvH4_2g13100 Fragaria vesca HOM05D000786 ORTHO05D006216 3.4e-16 88.2 94 56.4
FAN15G3470 Fragaria x ananassa HOM05D000786 ORTHO05D006216 3.4e-16 88.2 94 56.4
FAN20G2557 Fragaria x ananassa HOM05D000786 ORTHO05D006216 3.4e-16 88.2 94 56.4
FAN24G2413 Fragaria x ananassa HOM05D000786 ORTHO05D006216 3.4e-16 88.2 94 56.4
FAN27G0158 Fragaria x ananassa HOM05D000786 ORTHO05D006216 3.4e-16 88.2 94 56.4
CiPaw.15G013200 Carya illinoinensis HOM05D000786 ORTHO05D006216 4.5e-16 87.8 94 55.3
Prupe.8G039100 Prunus persica HOM05D000786 ORTHO05D006216 5.9e-16 87.4 94 54.3
Medtr1g098310 Medicago truncatula HOM05D000786 ORTHO05D006216 1.0e-15 86.7 94 55.3
Gohir.A02G063100 Gossypium hirsutum HOM05D000786 ORTHO05D006216 1.3e-15 86.3 95 51.6
ClCG08G003150 Citrullus lanatus HOM05D000786 ORTHO05D006216 2.2e-15 85.5 94 54.3
Dinv25892 Davidia involucrata HOM05D000786 ORTHO05D006216 2.2e-15 85.5 84 58.3
Gohir.D02G068800 Gossypium hirsutum HOM05D000786 ORTHO05D006216 2.2e-15 85.5 94 52.1
TWI34G1146 Tripterygium wilfordii HOM05D000786 ORTHO05D006216 2.2e-15 85.5 94 52.1
Glyma.20G169300 Glycine max HOM05D000786 ORTHO05D006216 2.9e-15 85.1 94 53.2
Lj5g0026860 Lotus japonicus HOM05D000786 ORTHO05D006216 2.9e-15 85.1 94 51.1
MELO3C024975.2 Cucumis melo HOM05D000786 ORTHO05D006216 3.8e-15 84.7 94 54.3
CsaV3_6G002840 Cucumis sativus L. HOM05D000786 ORTHO05D006216 3.8e-15 84.7 94 54.3
GSVIVG01034575001 Vitis vinifera HOM05D000786 ORTHO05D006216 3.8e-15 84.7 93 52.7
CSS0042693 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D006216 5.0e-15 84.3 94 54.3
Glyma.10G222300 Glycine max HOM05D000786 ORTHO05D006216 5.0e-15 84.3 94 53.2
Gorai.005G077700 Gossypium raimondii HOM05D000786 ORTHO05D006216 5.0e-15 84.3 83 55.4
Peaxi162Scf00360g10014 Petunia axillaris HOM05D000786 ORTHO05D006216 5.0e-15 84.3 94 50.0
PGSC0003DMG400025091 Solanum tuberosum HOM05D000786 ORTHO05D006216 5.0e-15 84.3 93 51.6
Nn5g28813 Nelumbo nucifera HOM05D000786 ORTHO05D006216 1.1e-14 83.2 94 51.1
CSS0019732 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D006216 1.4e-14 82.8 84 52.4
TAR381G0907 Trochodendron aralioides HOM05D000786 ORTHO05D006216 1.4e-14 82.8 94 50.0
Nn1g06009 Nelumbo nucifera HOM05D000786 ORTHO05D006216 1.9e-14 82.4 94 47.9
Sabra05G0149300 Salix brachista HOM05D000786 ORTHO05D006216 1.9e-14 82.4 83 55.4
Cc10_g15160 Coffea canephora HOM05D000786 ORTHO05D006216 2.5e-14 82.0 83 55.4
Phvul.007G082800 Phaseolus vulgaris HOM05D000786 ORTHO05D006216 2.5e-14 82.0 94 52.1
TPR.G10805 Trifolium pratense HOM05D000786 ORTHO05D006216 2.5e-14 82.0 94 53.2
CAN.G495.6 Capsicum annuum HOM05D000786 ORTHO05D006216 4.2e-14 81.3 95 50.5
MBI16_g14985_MAGBIO Magnolia biondii HOM05D000786 ORTHO05D006216 7.2e-14 80.5 83 51.8
Atru.chr4.724 Acer truncatum HOM05D000786 ORTHO05D006216 9.4e-14 80.1 84 51.2
Eucgr.F02688 Eucalyptus grandis HOM05D000786 ORTHO05D006216 9.4e-14 80.1 93 50.5
ATR0800G011 Amborella trichopoda HOM05D000786 ORTHO05D006216 1.2e-13 79.7 79 57.0
PGR119G2557 Punica granatum HOM05D000786 ORTHO05D006216 1.6e-13 79.3 83 55.4
Actinidia17774 Actinidia chinensis HOM05D000786 ORTHO05D006216 2.1e-13 79.0 84 53.6
Lalb_Chr06g0161691 Lupinus albus HOM05D000786 ORTHO05D006216 2.1e-13 79.0 82 53.7
Manes.12G145200 Manihot esculenta HOM05D000786 ORTHO05D006216 2.1e-13 79.0 86 50.0
Nitab4.5_0000099g0130 Nicotiana tabacum HOM05D000786 ORTHO05D006216 2.1e-13 79.0 92 51.1
Glyma.02G079500 Glycine max HOM05D000786 ORTHO05D006216 2.7e-13 78.6 89 48.3
Lsat_1_v5_gn_4_138400 Lactuca sativa HOM05D000786 ORTHO05D006216 2.7e-13 78.6 81 50.6
MD10G1033400 Malus domestica HOM05D000786 ORTHO05D006216 3.6e-13 78.2 82 53.7
Phvul.004G091400 Phaseolus vulgaris HOM05D000786 ORTHO05D006216 4.6e-13 77.8 89 50.6
Lsat_1_v5_gn_9_42040 Lactuca sativa HOM05D000786 ORTHO05D006216 7.9e-13 77.0 89 52.8
Sed0000205 Sechium edule HOM05D000786 ORTHO05D006216 7.9e-13 77.0 94 51.1
DCAR_011463 Daucus carota HOM05D000786 ORTHO05D006216 1.0e-12 76.6 78 51.3
Nitab4.5_0005070g0010 Nicotiana tabacum HOM05D000786 ORTHO05D006216 1.0e-12 76.6 93 49.5
HanXRQChr15g0493541 Helianthus annuus HOM05D000786 ORTHO05D006216 1.4e-12 76.3 76 51.3
Ah.05g168150 Amaranthus hybridus HOM05D000786 ORTHO05D006216 1.8e-12 75.9 80 55.0
Ciclev10026866m.g Citrus clementina HOM05D000786 ORTHO05D006216 1.8e-12 75.9 85 51.8
Migut.L00056 Erythranthe guttata HOM05D000786 ORTHO05D006216 1.8e-12 75.9 84 54.8
Rhsim10G0146600 Rhododendron simsii HOM05D000786 ORTHO05D006216 2.3e-12 75.5 86 52.3
Rhsim10G0147300 Rhododendron simsii HOM05D000786 ORTHO05D006216 2.3e-12 75.5 86 52.3
MSTRG.3817 Avicennia marina HOM05D000786 ORTHO05D006216 3.0e-12 75.1 77 51.9
Glyma.16G163900 Glycine max HOM05D000786 ORTHO05D006216 3.9e-12 74.7 82 51.2
Lj2g0013103 Lotus japonicus HOM05D000786 ORTHO05D006216 3.9e-12 74.7 88 46.6
Sc16g0004100 Simmondsia chinensis HOM05D000786 ORTHO05D006216 3.9e-12 74.7 81 48.1
Hma1.2p1_0529F.1_g173260 Hydrangea macrophylla HOM05D000786 ORTHO05D006216 5.1e-12 74.3 85 54.1
Oeu028354.1 Olea europaea HOM05D000786 ORTHO05D006216 5.1e-12 74.3 85 55.3
Sed0024174 Sechium edule HOM05D000786 ORTHO05D006216 5.1e-12 74.3 83 53.0
HanXRQChr09g0254011 Helianthus annuus HOM05D000786 ORTHO05D006216 6.7e-12 73.9 76 48.7
Cc07_g16650 Coffea canephora HOM05D000786 ORTHO05D006216 8.8e-12 73.6 76 51.3
Potri.007G077500 Populus trichocarpa HOM05D000786 ORTHO05D006216 8.8e-12 73.6 87 46.0
ClCG01G015870 Citrullus lanatus HOM05D000786 ORTHO05D006216 1.1e-11 73.2 81 50.6
Os06g0686600 Oryza sativa ssp. japonica HOM05D000786 ORTHO05D006216 1.1e-11 73.2 57 61.4
VMungo0720G1602 Vigna mungo HOM05D000786 ORTHO05D006216 1.1e-11 73.2 69 56.5
CSS0001280 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D006216 1.5e-11 72.8 78 51.3
unitig_0.g1746 Utricularia gibba HOM05D000786 ORTHO05D006216 1.5e-11 72.8 79 48.1
Lalb_Chr08g0238761 Lupinus albus HOM05D000786 ORTHO05D006216 3.3e-11 71.6 83 50.6
Prupe.6G166900 Prunus persica HOM05D000786 ORTHO05D006216 3.3e-11 71.6 86 48.8
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 5.7e-11 70.9 89 43.8
AUR62034855 Chenopodium quinoa HOM05D000786 ORTHO05D006216 9.7e-11 70.1 89 48.3
AUR62044756 Chenopodium quinoa HOM05D000786 ORTHO05D006216 9.7e-11 70.1 89 48.3
SalBow5G2955 Salvia bowleyana HOM05D000786 ORTHO05D006216 9.7e-11 70.1 77 51.9
CAN.G1248.27 Capsicum annuum HOM05D000786 ORTHO05D006216 1.3e-10 69.7 76 46.1
FAN19G0145 Fragaria x ananassa HOM05D000786 ORTHO05D006216 1.7e-10 69.3 88 44.3
Lalb_Chr19g0130081 Lupinus albus HOM05D000786 ORTHO05D006216 1.7e-10 69.3 82 48.8
MD15G1335800 Malus domestica HOM05D000786 ORTHO05D006216 1.7e-10 69.3 86 46.5
FvH4_1g23170 Fragaria vesca HOM05D000786 ORTHO05D006216 2.2e-10 68.9 88 44.3
FAN23G1700 Fragaria x ananassa HOM05D000786 ORTHO05D006216 2.2e-10 68.9 88 44.3
HPP92_027891 Vanilla planifolia HOM05D000786 ORTHO05D006216 2.2e-10 68.9 83 49.4
Cfa002784 Carpinus fangiana HOM05D000786 ORTHO05D006216 2.8e-10 68.6 85 48.2
COL.COLO4_03470 Corchorus olitorius HOM05D000786 ORTHO05D006216 2.8e-10 68.6 88 46.6
QL06p031416 Quercus lobata HOM05D000786 ORTHO05D006216 2.8e-10 68.6 84 47.6
Solyc04g051470.1 Solanum lycopersicum HOM05D000786 ORTHO05D006216 2.8e-10 68.6 76 47.4
Sopen04g022850 Solanum pennellii HOM05D000786 ORTHO05D006216 2.8e-10 68.6 76 47.4
SalBow6G2838 Salvia bowleyana HOM05D000786 ORTHO05D006216 3.7e-10 68.2 94 44.7
HPP92_018298 Vanilla planifolia HOM05D000786 ORTHO05D006216 3.7e-10 68.2 83 49.4
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 4.8e-10 67.8 86 45.3
FAN26G3223 Fragaria x ananassa HOM05D000786 ORTHO05D006216 4.8e-10 67.8 88 43.2
FAN28G3029 Fragaria x ananassa HOM05D000786 ORTHO05D006216 4.8e-10 67.8 88 43.2
MBI19_g15944_MAGBIO Magnolia biondii HOM05D000786 ORTHO05D006216 6.3e-10 67.4 84 48.8
PGSC0003DMG402019696 Solanum tuberosum HOM05D000786 ORTHO05D006216 6.3e-10 67.4 76 46.1
Haze_25081 Corylus avellana HOM05D000786 ORTHO05D006216 8.2e-10 67.0 85 47.1
Migut.N03203 Erythranthe guttata HOM05D000786 ORTHO05D006216 8.2e-10 67.0 82 47.6
SGA_v2.0_scaffold34G13633 Striga asiatica HOM05D000786 ORTHO05D006216 8.2e-10 67.0 78 48.7
unitig_747.g21813 Utricularia gibba HOM05D000786 ORTHO05D006216 8.2e-10 67.0 78 46.2
CsaV3_6G042150 Cucumis sativus L. HOM05D000786 ORTHO05D006216 1.1e-09 66.6 81 48.1
RcHm_v2.0_Chr2g0117891 Rosa chinensis HOM05D000786 ORTHO05D006216 1.1e-09 66.6 88 43.2
CDE04G0685 Ceratophyllum demersum HOM05D000786 ORTHO05D006216 2.4e-09 65.5 82 46.3
Oeu015843.1 Olea europaea HOM05D000786 ORTHO05D006216 2.4e-09 65.5 77 46.8
MELO3C007453.2 Cucumis melo HOM05D000786 ORTHO05D006216 4.1e-09 64.7 81 46.9
Zm00001eb225670 Zea mays HOM05D000786 ORTHO05D006216 4.1e-09 64.7 76 44.7
Glyma.06G148000 Glycine max HOM05D000786 ORTHO05D006216 9.1e-09 63.5 83 44.6
SMO172G0046 Selaginella moellendorffii HOM05D000786 ORTHO05D000779 9.1e-09 63.5 78 47.4
CiPaw.03G131800 Carya illinoinensis HOM05D000786 ORTHO05D006216 1.2e-08 63.2 100 42.0
Sabra05G0071600 Salix brachista HOM05D000786 ORTHO05D006216 1.2e-08 63.2 86 43.0
PSO541G3255 Papaver somniferum HOM05D000786 ORTHO05D006216 2.6e-08 62.0 86 47.7
Sabra07G0065500 Salix brachista HOM05D000786 ORTHO05D006216 2.6e-08 62.0 86 44.2
CiPaw.16G009100 Carya illinoinensis HOM05D000786 ORTHO05D006216 7.7e-08 60.5 66 53.0
Dinv02076 Davidia involucrata HOM05D000786 ORTHO05D000779 3.8e-07 58.2 45 55.6
Peaxi162Scf00025g00337 Petunia axillaris HOM05D000786 ORTHO05D006216 1.1e-06 56.6 76 44.7
Glyma.04G217900 Glycine max HOM05D000786 ORTHO05D006216 2.5e-06 55.5 83 45.8
Mapoly0050s0122 Marchantia polymorpha HOM05D000786 ORTHO05D000779 2.5e-06 55.5 38 60.5
AagrBONN_evm.TU.Sc2ySwM_228.2913 Anthoceros agrestis HOM05D000786 ORTHO05D000779 3.2e-06 55.1 74 41.9
Actinidia15584 Actinidia chinensis HOM05D001250 ORTHO05D000627 5.5e-06 54.3 39 59.0
Actinidia32163 Actinidia chinensis HOM05D000250 ORTHO05D000625 5.5e-06 54.3 52 51.9
DCAR_028271 Daucus carota HOM05D000786 ORTHO05D000779 5.5e-06 54.3 55 43.6
Lalb_Chr24g0396521 Lupinus albus HOM05D000786 ORTHO05D000779 5.5e-06 54.3 51 51.0
Thecc.09G085500 Theobroma cacao HOM05D000786 ORTHO05D000779 5.5e-06 54.3 59 49.2
CSS0019123 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D000779 7.2e-06 53.9 38 60.5
Duzib138G1722 Durio zibethinus HOM05D000786 ORTHO05D000779 7.2e-06 53.9 39 59.0
Glyma.13G348000 Glycine max HOM05D000786 ORTHO05D000779 9.4e-06 53.5 39 56.4
Lsat_1_v5_gn_5_143041 Lactuca sativa HOM05D000786 ORTHO05D000779 9.4e-06 53.5 74 37.8
Pp3c2_8840 Physcomitrium patens HOM05D000786 ORTHO05D000779 9.4e-06 53.5 43 53.5
VMungo1309G1255 Vigna mungo HOM05D000786 ORTHO05D000779 9.4e-06 53.5 39 53.8
Zm00001eb273520 Zea mays HOM05D000786 ORTHO05D006216 9.4e-06 53.5 49 49.0


User provided reference genes

Program Settings