Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 7.3e-173 610.5 321 100.0
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.8e-91 340.1 335 64.2
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 2.9e-89 332.8 329 62.0
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 2.9e-89 332.8 328 63.4
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 3.2e-88 329.3 333 63.1
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 3.2e-88 329.3 333 63.1
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 2.3e-86 323.2 321 62.0
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 1.4e-83 313.9 358 58.7
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 1.4e-83 313.9 358 58.7
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 1.4e-83 313.9 357 57.7
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.9e-80 303.5 371 54.2
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 6.8e-78 295.0 329 58.4
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.2e-69 267.7 378 51.1
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 7.2e-64 248.4 322 54.0
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 7.2e-64 248.4 322 54.0
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 7.2e-64 248.4 322 54.0
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.6e-63 247.3 370 46.5
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 1.0e-62 244.6 325 52.0
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 2.0e-61 240.4 326 51.2
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 3.4e-61 239.6 329 50.8
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.2e-55 221.1 340 45.9
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 8.6e-49 198.4 279 50.2
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 2.8e-39 166.8 356 37.1
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 2.3e-38 163.7 339 39.2
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 3.1e-38 163.3 359 37.6
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 5.2e-38 162.5 376 36.2
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 5.2e-38 162.5 349 38.1
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 6.8e-38 162.2 343 38.5
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 7.6e-37 158.7 335 36.4
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 8.3e-36 155.2 350 37.1
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 1.1e-35 154.8 342 36.3
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 2.4e-35 153.7 365 35.6
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 2.4e-35 153.7 365 35.6
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 2.4e-35 153.7 328 33.5
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 3.2e-35 153.3 342 37.4
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 5.4e-35 152.5 388 34.8
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 7.1e-35 152.1 381 33.1
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 7.1e-35 152.1 340 37.1
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 9.2e-35 151.8 352 36.4
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 1.6e-34 151.0 331 35.6
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 3.5e-34 149.8 344 35.8
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 7.8e-34 148.7 367 33.5
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 7.8e-34 148.7 331 35.3
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 1.0e-33 148.3 364 34.1
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 1.7e-33 147.5 356 36.2
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.3e-33 147.1 324 35.2
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 3.0e-33 146.7 333 35.4
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 8.6e-33 145.2 363 34.4
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 1.1e-32 144.8 357 34.7
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 3.3e-32 143.3 342 36.5
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 5.6e-32 142.5 344 34.0
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 5.6e-32 142.5 342 32.2
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 1.2e-31 141.4 340 33.8
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 1.2e-31 141.4 362 35.9
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 2.1e-31 140.6 346 35.0
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 8.1e-31 138.7 344 33.4
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 8.1e-31 138.7 365 32.6
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 1.1e-30 138.3 348 34.2
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 2.4e-30 137.1 342 31.9
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 4.0e-30 136.3 173 46.8
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 8.9e-30 135.2 138 54.3
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 8.9e-30 135.2 130 54.6
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 1.5e-29 134.4 354 35.3
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 2.0e-29 134.0 330 33.9
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 3.4e-29 133.3 331 32.6
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 3.4e-29 133.3 398 31.7
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 4.4e-29 132.9 340 32.4
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 4.4e-29 132.9 340 33.2
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 4.4e-29 132.9 356 33.7
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 4.4e-29 132.9 335 33.4
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 5.8e-29 132.5 360 32.5
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 7.6e-29 132.1 330 33.0
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 7.6e-29 132.1 330 35.5
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 7.6e-29 132.1 340 35.3
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 9.9e-29 131.7 357 32.8
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.3e-28 131.3 349 31.5
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.7e-28 131.0 330 32.7
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 2.2e-28 130.6 337 33.5
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 2.2e-28 130.6 345 32.2
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 2.9e-28 130.2 136 51.5
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 4.9e-28 129.4 335 32.8
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 8.4e-28 128.6 163 46.0
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 8.4e-28 128.6 349 35.0
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 8.4e-28 128.6 353 31.7
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 1.1e-27 128.3 377 30.8
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.4e-27 127.9 144 50.7
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 1.9e-27 127.5 320 33.4
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 1.9e-27 127.5 326 33.7
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 2.4e-27 127.1 362 33.1
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 4.2e-27 126.3 337 34.7
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 7.1e-27 125.6 255 36.9
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.2e-26 124.8 330 32.1
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.2e-26 124.8 352 32.7
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.2e-26 124.8 360 33.3
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 1.6e-26 124.4 324 34.6
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.6e-26 124.4 357 30.3
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 2.1e-26 124.0 328 32.3
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 2.7e-26 123.6 156 44.2
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 3.5e-26 123.2 331 32.3
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 3.5e-26 123.2 132 51.5
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 3.5e-26 123.2 148 47.3
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 4.6e-26 122.9 334 35.6
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 4.6e-26 122.9 369 32.2
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 6.0e-26 122.5 157 45.9
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 7.8e-26 122.1 336 33.9
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 1.0e-25 121.7 370 31.9
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 1.0e-25 121.7 398 30.7
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.3e-25 121.3 202 42.1
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.7e-25 120.9 227 38.8
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 2.3e-25 120.6 373 31.9
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 3.0e-25 120.2 366 33.3
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 5.1e-25 119.4 334 33.2
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 5.1e-25 119.4 112 51.8
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 5.1e-25 119.4 295 35.9
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.1e-24 118.2 371 30.2
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 1.1e-24 118.2 225 38.7
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 1.5e-24 117.9 350 32.6
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 1.5e-24 117.9 397 29.5
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 5.6e-24 115.9 332 29.8
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 5.6e-24 115.9 124 50.0
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.6e-23 114.4 360 31.9
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 2.8e-23 113.6 253 36.4
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 8.1e-23 112.1 170 45.3
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 1.4e-22 111.3 176 41.5
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.4e-22 111.3 365 29.6
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.4e-22 111.3 143 44.8
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 1.4e-22 111.3 332 32.8
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 2.4e-22 110.5 176 41.5
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 4.0e-22 109.8 169 45.0
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 7.6e-21 105.5 342 32.7
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 7.6e-21 105.5 342 32.7
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 9.9e-21 105.1 112 49.1
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 9.9e-21 105.1 112 49.1
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 1.3e-20 104.8 342 32.5
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 1.7e-20 104.4 106 53.8
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 3.8e-20 103.2 213 37.6
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 1.1e-19 101.7 169 40.8
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 1.9e-19 100.9 239 35.1
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 3.2e-19 100.1 125 45.6
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 3.2e-19 100.1 222 35.6
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 1.2e-18 98.2 331 31.1
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 1.6e-18 97.8 167 32.9
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 2.7e-18 97.1 108 49.1
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 2.7e-18 97.1 156 37.8
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 7.8e-18 95.5 332 27.4
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 1.7e-17 94.4 128 46.1
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 5.1e-17 92.8 160 40.0
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.5e-16 91.3 281 29.9
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 3.3e-16 90.1 285 32.3
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 3.3e-16 90.1 285 32.3
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 4.3e-16 89.7 192 35.4
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 7.3e-16 89.0 195 35.4
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.8e-15 87.0 73 64.4
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 3.6e-15 86.7 115 36.5
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 6.2e-15 85.9 242 30.6
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 1.4e-14 84.7 73 63.0
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 9.0e-14 82.0 108 45.4
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.0e-13 80.9 327 29.4
BolC1t02621H Brassica oleracea HOM05D000032 ORTHO05D024508 4.5e-13 79.7 66 68.2
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 5.8e-13 79.3 184 34.8
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 1.7e-12 77.8 283 29.3
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 6.4e-12 75.9 219 28.3
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 3.2e-11 73.6 184 31.5
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 4.2e-11 73.2 207 29.5
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 1.6e-10 71.2 212 29.7
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 4.6e-10 69.7 219 32.4
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 4.6e-10 69.7 190 31.6
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 3.9e-09 66.6 324 25.0
BcaC07g37962 Brassica carinata HOM05D003874 ORTHO05D004545 1.1e-06 58.5 226 37.2
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 9.0e-06 55.5 43 67.4


User provided reference genes

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