Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g06680 Schrenkiella parvula HOM05D003086 ORTHO05D003347 2.4e-27 125.2 85 100.0
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 4.6e-26 120.9 85 78.8
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 7.9e-26 120.2 85 77.6
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 2.3e-25 118.6 85 77.6
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 6.7e-25 117.1 85 76.5
Thhalv10029101m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 1.6e-23 112.5 85 80.0
BcaB05g23876 Brassica carinata HOM05D003086 ORTHO05D003347 2.1e-23 112.1 85 80.0
Aa31LG9G11270 Aethionema arabicum HOM05D003086 ORTHO05D003347 2.6e-21 105.1 85 75.3
BcaB05g23875 Brassica carinata HOM05D003086 ORTHO05D003347 2.6e-21 105.1 86 77.9
A02p26470 Brassica napus HOM05D003086 ORTHO05D003347 1.3e-20 102.8 86 75.6
BraA02t07650Z Brassica rapa HOM05D003086 ORTHO05D003347 1.3e-20 102.8 86 75.6
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 1.7e-20 102.4 85 69.4
BcaB01g02737 Brassica carinata HOM05D003086 ORTHO05D003347 5.1e-17 90.9 88 69.3
BcaC01g04661 Brassica carinata HOM05D003086 ORTHO05D003347 5.1e-17 90.9 88 69.3
C03p35200 Brassica napus HOM05D003086 ORTHO05D003347 5.1e-17 90.9 88 69.3
BolC3t15831H Brassica oleracea HOM05D003086 ORTHO05D003347 5.1e-17 90.9 88 69.3
A03p29280 Brassica napus HOM05D003086 ORTHO05D003347 6.7e-17 90.5 89 68.5
BraA03t12124Z Brassica rapa HOM05D003086 ORTHO05D003347 6.7e-17 90.5 89 68.5
Thhalv10026968m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 1.1e-16 89.7 63 74.6
C09p35950 Brassica napus HOM05D003086 ORTHO05D003347 1.9e-16 89.0 86 69.8
BolC9t56428H Brassica oleracea HOM05D003086 ORTHO05D003347 1.9e-16 89.0 86 69.8
BcaNung01108 Brassica carinata HOM05D003086 ORTHO05D003347 5.7e-16 87.4 63 69.8
BcaC05g27913 Brassica carinata HOM05D003086 ORTHO05D003347 7.4e-16 87.0 86 68.6
C05p39210 Brassica napus HOM05D003086 ORTHO05D003347 7.4e-16 87.0 86 68.6
BolC5t32654H Brassica oleracea HOM05D003086 ORTHO05D003347 7.4e-16 87.0 86 68.6
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 2.8e-15 85.1 58 67.2
BcaC09g50920 Brassica carinata HOM05D003086 ORTHO05D003347 3.7e-15 84.7 63 68.3
C01p19250 Brassica napus HOM05D003086 ORTHO05D003347 3.7e-15 84.7 63 68.3
BolC1t01850H Brassica oleracea HOM05D003086 ORTHO05D003347 3.7e-15 84.7 63 68.3
BraA01t01474Z Brassica rapa HOM05D003086 ORTHO05D003347 3.7e-15 84.7 63 68.3
BraA08t32861Z Brassica rapa HOM05D003086 ORTHO05D003347 3.7e-15 84.7 63 68.3
AT4G24026 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 1.2e-13 79.7 87 59.8
A09p28400 Brassica napus HOM05D003086 ORTHO05D003347 1.2e-13 79.7 86 64.0
AL7G29250 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 1.5e-13 79.3 88 59.1
BraA09t38405Z Brassica rapa HOM05D003086 ORTHO05D003347 1.5e-13 79.3 85 63.5
BcaNung06471 Brassica carinata HOM05D003086 ORTHO05D003347 4.5e-13 77.8 85 56.5
C07p53320 Brassica napus HOM05D003086 ORTHO05D003347 4.5e-13 77.8 85 56.5
BolC7t45826H Brassica oleracea HOM05D003086 ORTHO05D003347 4.5e-13 77.8 85 56.5
Thhalv10015091m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 4.5e-13 77.8 62 66.1
Carub.0007s1706 Capsella rubella HOM05D003086 ORTHO05D003347 1.0e-12 76.6 88 58.0
Atru.chr9.1962 Acer truncatum HOM05D003086 ORTHO05D003347 3.8e-12 74.7 60 70.0
BcaNung05697 Brassica carinata HOM05D003086 ORTHO05D003347 3.8e-12 74.7 87 52.9
A03p54930 Brassica napus HOM05D003086 ORTHO05D003347 4.2e-11 71.2 86 58.1
BraA03t14558Z Brassica rapa HOM05D003086 ORTHO05D003347 4.2e-11 71.2 86 58.1
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 5.5e-11 70.9 59 55.9
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 5.5e-11 70.9 59 55.9
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 9.4e-11 70.1 53 62.3
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 6.1e-10 67.4 58 53.4
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 6.1e-10 67.4 50 62.0
Ciclev10023176m.g Citrus clementina HOM05D003086 ORTHO05D003347 7.9e-10 67.0 62 66.1
Ciclev10033638m.g Citrus clementina HOM05D003086 ORTHO05D003347 7.9e-10 67.0 62 66.1
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 7.9e-10 67.0 50 66.0
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 1.0e-09 66.6 57 57.9
Aa31LG2G1580 Aethionema arabicum HOM05D000001 ORTHO05D000003 1.4e-09 66.2 57 66.7
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 1.4e-09 66.2 59 61.0
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 1.4e-09 66.2 55 56.4
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 1.8e-09 65.9 53 64.2
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 2.3e-09 65.5 57 56.1
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 3.0e-09 65.1 50 62.0
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 3.0e-09 65.1 53 62.3
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 3.9e-09 64.7 58 55.2
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 3.9e-09 64.7 55 60.0
Potri.001G087200 Populus trichocarpa HOM05D003086 ORTHO05D003347 3.9e-09 64.7 55 56.4
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 5.1e-09 64.3 51 62.7
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 5.1e-09 64.3 51 64.7
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 6.7e-09 63.9 47 63.8
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 6.7e-09 63.9 50 60.0
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 6.7e-09 63.9 50 60.0
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 6.7e-09 63.9 50 60.0
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 6.7e-09 63.9 51 62.7
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 6.7e-09 63.9 51 58.8
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 8.8e-09 63.5 58 62.1
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 8.8e-09 63.5 56 57.1
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 8.8e-09 63.5 56 55.4
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 8.8e-09 63.5 55 58.2
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 1.1e-08 63.2 59 57.6
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 1.1e-08 63.2 51 60.8
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 1.5e-08 62.8 53 60.4
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 1.5e-08 62.8 50 62.0
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 1.5e-08 62.8 59 47.5
SEGI_15730 Sequoiadendron giganteum HOM05D003086 ORTHO05D003347 1.5e-08 62.8 53 62.3
THA.LOC109116607 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 1.5e-08 62.8 53 58.5
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.5e-08 62.8 50 60.0
FvH4_5g11470 Fragaria vesca HOM05D003086 ORTHO05D003347 1.9e-08 62.4 56 64.3
FAN08G3604 Fragaria x ananassa HOM05D003086 ORTHO05D003347 1.9e-08 62.4 58 51.7
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 1.9e-08 62.4 51 60.8
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 1.9e-08 62.4 50 58.0
QL02p028382 Quercus lobata HOM05D003086 ORTHO05D003347 1.9e-08 62.4 46 65.2
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 2.5e-08 62.0 51 58.8
FAN13G3255 Fragaria x ananassa HOM05D003086 ORTHO05D003347 2.5e-08 62.0 56 55.4
FAN18G2695 Fragaria x ananassa HOM05D003086 ORTHO05D003347 2.5e-08 62.0 56 55.4
RcHm_v2.0_Chr7g0186341 Rosa chinensis HOM05D003086 ORTHO05D003347 2.5e-08 62.0 58 62.1
Manes.02G005600 Manihot esculenta HOM05D003086 ORTHO05D003347 3.3e-08 61.6 62 53.2
Sabra01G0063400 Salix brachista HOM05D003086 ORTHO05D003347 3.3e-08 61.6 55 54.5
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 4.3e-08 61.2 60 55.0
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 4.3e-08 61.2 52 57.7
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 4.3e-08 61.2 52 57.7
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 5.7e-08 60.8 51 64.7
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 7.4e-08 60.5 52 57.7
FAN04G2505 Fragaria x ananassa HOM05D003086 ORTHO05D003347 7.4e-08 60.5 58 51.7
Gorai.004G131100 Gossypium raimondii HOM05D003086 ORTHO05D003347 7.4e-08 60.5 77 48.1
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 7.4e-08 60.5 50 58.0
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 9.7e-08 60.1 57 52.6
Migut.N01532 Erythranthe guttata HOM05D003086 ORTHO05D003347 9.7e-08 60.1 56 62.5
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 9.7e-08 60.1 60 50.0
CANSAT21G0721 Cannabis sativa HOM05D003086 ORTHO05D003347 1.3e-07 59.7 55 60.0
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 1.3e-07 59.7 51 54.9
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 1.7e-07 59.3 53 56.6
CAN.G481.40 Capsicum annuum HOM05D003086 ORTHO05D003347 1.7e-07 59.3 51 70.6
Gohir.A08G111400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.2e-07 58.9 77 46.8
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 2.2e-07 58.9 54 53.7
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 2.8e-07 58.5 49 59.2
Glyma.07G054300 Glycine max HOM05D003086 ORTHO05D003347 3.7e-07 58.2 55 54.5
Gohir.D08G124400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 3.7e-07 58.2 77 46.8
MD06G1113400 Malus domestica HOM05D003086 ORTHO05D003347 3.7e-07 58.2 61 52.5
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 3.7e-07 58.2 53 52.8
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 4.8e-07 57.8 53 54.7
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 4.8e-07 57.8 48 62.5
CiPaw.12G080100 Carya illinoinensis HOM05D003086 ORTHO05D003347 6.3e-07 57.4 59 49.2
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 6.3e-07 57.4 53 50.9
Manes.01G053400 Manihot esculenta HOM05D003086 ORTHO05D003347 6.3e-07 57.4 62 48.4
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 8.2e-07 57.0 47 59.6
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 8.2e-07 57.0 47 57.4
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 8.2e-07 57.0 51 54.9
Sabra14G0073900 Salix brachista HOM05D003086 ORTHO05D003347 8.2e-07 57.0 55 50.9
CARHR046350 Cardamine hirsuta HOM05D003086 ORTHO05D003347 1.1e-06 56.6 55 54.5
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 1.1e-06 56.6 50 54.0
COL.COLO4_16806 Corchorus olitorius HOM05D003086 ORTHO05D003347 1.1e-06 56.6 45 62.2
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 1.1e-06 56.6 50 58.0
Sopen03g022700 Solanum pennellii HOM05D003086 ORTHO05D003347 1.4e-06 56.2 52 67.3
PGSC0003DMG400018543 Solanum tuberosum HOM05D003086 ORTHO05D003347 1.4e-06 56.2 52 67.3
TWI60G1451 Tripterygium wilfordii HOM05D003086 ORTHO05D003347 1.4e-06 56.2 48 64.6
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.8e-06 55.8 56 44.6
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 1.8e-06 55.8 52 53.8
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 2.4e-06 55.5 51 52.9
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 2.4e-06 55.5 56 48.2
Phvul.010G115200 Phaseolus vulgaris HOM05D003086 ORTHO05D003347 2.4e-06 55.5 56 51.8
Thecc.03G202500 Theobroma cacao HOM05D003086 ORTHO05D003347 2.4e-06 55.5 45 60.0
MD14G1134500 Malus domestica HOM05D003086 ORTHO05D003347 3.1e-06 55.1 34 76.5
Manes.01G039600 Manihot esculenta HOM05D003086 ORTHO05D003347 3.1e-06 55.1 39 64.1
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 3.1e-06 55.1 48 60.4
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 3.1e-06 55.1 52 53.8
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 5.3e-06 54.3 51 52.9
Lj3g0004362 Lotus japonicus HOM05D003086 ORTHO05D003347 5.3e-06 54.3 58 50.0
Sc23g0002030 Simmondsia chinensis HOM05D003086 ORTHO05D003347 5.3e-06 54.3 48 54.2
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 5.3e-06 54.3 51 52.9
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 5.3e-06 54.3 51 52.9
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 5.3e-06 54.3 51 52.9
EL10Ac3g05245 Beta vulgaris HOM05D003086 ORTHO05D003347 6.9e-06 53.9 56 50.0
Nitab4.5_0007100g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 6.9e-06 53.9 60 60.0
Nitab4.5_0002780g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 9.1e-06 53.5 51 66.7
RcHm_v2.0_Chr1g0381731 Rosa chinensis HOM05D003086 ORTHO05D003347 9.1e-06 53.5 45 60.0


User provided reference genes

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