Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 1.5e-113 412.9 217 100.0
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 2.7e-94 349.0 218 86.2
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 6.8e-90 334.3 217 84.8
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 3.4e-89 332.0 218 85.3
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 5.4e-87 324.7 217 84.3
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 1.2e-81 307.0 225 78.7
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 5.8e-81 304.7 220 80.0
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 1.6e-78 296.6 240 74.6
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 8.6e-77 290.8 220 76.4
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 3.3e-76 288.9 223 75.3
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 1.5e-60 236.9 275 56.7
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 4.6e-46 188.7 123 87.8
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 5.5e-39 165.2 222 53.6
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 6.7e-37 158.3 216 49.5
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 9.6e-36 154.5 217 49.3
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 1.1e-34 151.0 211 47.4
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 1.8e-34 150.2 224 49.6
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 5.3e-34 148.7 217 51.6
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 5.3e-34 148.7 222 47.3
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 7.6e-33 144.8 207 49.8
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 1.0e-32 144.4 206 48.1
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 1.0e-32 144.4 195 50.3
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 1.3e-32 144.1 218 48.6
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 1.3e-32 144.1 176 52.8
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.3e-32 144.1 207 48.3
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 3.8e-32 142.5 207 49.3
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 3.8e-32 142.5 213 49.3
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 4.9e-32 142.1 209 47.8
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 4.9e-32 142.1 180 52.8
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 8.4e-32 141.4 218 48.2
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 1.9e-31 140.2 208 47.6
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 3.2e-31 139.4 208 48.1
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 4.2e-31 139.0 211 48.3
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 4.2e-31 139.0 211 48.3
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 4.2e-31 139.0 207 47.3
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 7.1e-31 138.3 223 46.2
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 7.1e-31 138.3 207 48.3
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 7.1e-31 138.3 214 50.0
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 9.3e-31 137.9 201 48.3
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 1.2e-30 137.5 192 51.0
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.6e-30 137.1 207 48.3
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 2.1e-30 136.7 208 48.1
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 4.6e-30 135.6 196 52.0
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 6.0e-30 135.2 245 43.7
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 7.9e-30 134.8 190 50.5
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 1.0e-29 134.4 177 49.2
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 1.3e-29 134.0 192 51.0
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 2.3e-29 133.3 200 50.0
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 3.0e-29 132.9 207 46.4
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 5.1e-29 132.1 210 47.1
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.5e-28 130.6 209 46.4
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 1.5e-28 130.6 176 49.4
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 1.5e-28 130.6 210 46.2
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 1.9e-28 130.2 217 48.4
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 4.3e-28 129.0 180 50.0
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 7.4e-28 128.3 175 51.4
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 7.4e-28 128.3 217 43.8
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 9.6e-28 127.9 233 45.9
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 9.6e-28 127.9 175 51.4
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 9.6e-28 127.9 174 50.6
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 1.3e-27 127.5 205 43.4
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 2.1e-27 126.7 207 44.9
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 2.1e-27 126.7 205 46.3
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 3.7e-27 125.9 201 45.3
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 6.3e-27 125.2 235 40.9
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 6.3e-27 125.2 212 46.7
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 1.1e-26 124.4 178 48.9
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 1.1e-26 124.4 178 48.9
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 1.1e-26 124.4 206 44.7
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 1.8e-26 123.6 185 51.4
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 4.1e-26 122.5 186 51.1
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 5.3e-26 122.1 174 48.3
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 6.9e-26 121.7 220 46.4
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 9.0e-26 121.3 201 46.3
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 1.5e-25 120.6 210 46.7
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 2.0e-25 120.2 275 38.9
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 2.6e-25 119.8 181 48.1
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 2.6e-25 119.8 220 45.9
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 4.5e-25 119.0 166 47.0
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 5.9e-25 118.6 209 45.0
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 5.9e-25 118.6 175 47.4
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 5.9e-25 118.6 234 41.0
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 5.9e-25 118.6 211 44.1
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 5.9e-25 118.6 192 45.3
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 7.6e-25 118.2 211 45.5
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.3e-24 117.5 220 45.9
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.3e-24 117.5 220 45.9
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 1.7e-24 117.1 206 44.7
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 2.2e-24 116.7 215 41.9
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.4e-23 114.0 119 58.8
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.4e-23 114.0 119 58.8
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 1.4e-23 114.0 203 41.4
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 2.5e-23 113.2 126 57.1
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 3.2e-23 112.8 193 45.1
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 4.2e-23 112.5 189 46.6
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 9.3e-23 111.3 215 41.9
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 3.6e-22 109.4 274 36.5
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 3.6e-22 109.4 274 36.5
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 4.6e-22 109.0 232 39.2
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 6.1e-22 108.6 119 56.3
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 6.1e-22 108.6 218 39.4
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 1.0e-21 107.8 119 55.5
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 6.7e-21 105.1 126 53.2
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 6.7e-21 105.1 119 55.5
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 1.1e-20 104.4 121 53.7
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 2.5e-20 103.2 126 52.4
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 4.3e-20 102.4 114 55.3
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 9.7e-20 101.3 126 53.2
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 1.6e-19 100.5 122 51.6
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 2.2e-19 100.1 125 52.8
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 2.2e-19 100.1 120 55.0
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 2.2e-19 100.1 210 42.4
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 2.8e-19 99.8 194 43.8
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 8.2e-19 98.2 258 36.4
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 1.1e-18 97.8 116 51.7
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 1.4e-18 97.4 98 57.1
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 1.8e-18 97.1 161 43.5
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.8e-18 97.1 121 49.6
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 2.4e-18 96.7 204 44.1
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 1.5e-17 94.0 133 48.1
BcaB01g01572 Brassica carinata HOM05D005115 ORTHO05D005703 7.7e-17 91.7 64 76.6
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 2.2e-16 90.1 175 45.7
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 2.5e-15 86.7 209 33.0
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 7.2e-15 85.1 253 34.8
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 6.1e-14 82.0 180 37.2
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 3.0e-13 79.7 97 51.5
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 2.0e-12 77.0 105 46.7
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 5.7e-12 75.5 96 45.8
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 5.7e-12 75.5 295 31.2
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 1.3e-11 74.3 123 41.5
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 2.2e-11 73.6 101 52.5
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 2.0e-09 67.0 184 36.4
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 7.7e-09 65.1 74 54.1
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 6.5e-08 62.0 66 51.5
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 6.5e-08 62.0 111 40.5
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 6.5e-08 62.0 111 40.5
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 6.5e-08 62.0 111 40.5
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 2.7e-06 56.6 102 42.2
BcaC04g21094 Brassica carinata HOM05D000749 ORTHO05D032201 6.1e-06 55.5 42 73.8
C09p35740 Brassica napus HOM05D000749 ORTHO05D032201 6.1e-06 55.5 42 73.8


User provided reference genes

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