Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g03760 Schrenkiella parvula HOM05D003286 ORTHO05D002463 1.1e-31 139.4 74 100.0
Thhalv10029386m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 8.4e-16 86.7 76 67.1
BcaC04g21387 Brassica carinata HOM05D003286 ORTHO05D002463 3.2e-15 84.7 76 67.1
C09p32410 Brassica napus HOM05D003286 ORTHO05D002463 3.2e-15 84.7 76 67.1
BolC9t56086H Brassica oleracea HOM05D003286 ORTHO05D002463 3.2e-15 84.7 76 67.1
CARHR252330 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.8e-13 79.0 66 68.2
A09p25500 Brassica napus HOM05D003286 ORTHO05D002463 3.0e-13 78.2 76 61.8
BraA09t38125Z Brassica rapa HOM05D003286 ORTHO05D002463 3.0e-13 78.2 76 61.8
Carub.0006s3413 Capsella rubella HOM05D003286 ORTHO05D002463 3.0e-13 78.2 65 67.7
BraA08t33672Z Brassica rapa HOM05D003286 ORTHO05D002463 3.9e-13 77.8 76 60.5
Carub.0006s3317 Capsella rubella HOM05D003286 ORTHO05D002463 3.9e-13 77.8 76 59.2
AL6G48830 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 1.1e-12 76.3 65 67.7
BcaB01g01895 Brassica carinata HOM05D003286 ORTHO05D002463 1.1e-12 76.3 76 59.2
CARHR251320 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.5e-12 75.9 65 66.2
AT4G05230 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 1.9e-12 75.5 65 66.2
CSS0013854 Camellia sinensis var. sinensis HOM05D003286 ORTHO05D002463 4.3e-12 74.3 65 64.6
PGR042G2119 Punica granatum HOM05D003286 ORTHO05D002463 4.3e-12 74.3 73 56.2
Thhalv10028963m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 5.6e-12 73.9 76 60.5
BcaC01g00928 Brassica carinata HOM05D003286 ORTHO05D002463 1.3e-11 72.8 65 63.1
A08p17100 Brassica napus HOM05D003286 ORTHO05D002463 1.3e-11 72.8 78 59.0
C03p86020 Brassica napus HOM05D003286 ORTHO05D002463 1.3e-11 72.8 65 63.1
BolC3t20894H Brassica oleracea HOM05D003286 ORTHO05D002463 1.3e-11 72.8 65 63.1
Sp6g02990 Schrenkiella parvula HOM05D003286 ORTHO05D002463 2.1e-11 72.0 65 63.1
CiPaw.09G087100 Carya illinoinensis HOM05D003286 ORTHO05D002463 2.8e-11 71.6 74 56.8
Hma1.2p1_0158F.1_g069790 Hydrangea macrophylla HOM05D003286 ORTHO05D002463 6.2e-11 70.5 65 61.5
Aa31sc199G10 Aethionema arabicum HOM05D003286 ORTHO05D002463 8.1e-11 70.1 72 54.2
Manes.17G035100 Manihot esculenta HOM05D003286 ORTHO05D002463 8.1e-11 70.1 70 55.7
Medtr3g080180 Medicago truncatula HOM05D003286 ORTHO05D002463 8.1e-11 70.1 66 60.6
Cpa.g.sc198.10 Carica papaya HOM05D003286 ORTHO05D002463 1.8e-10 68.9 65 58.5
Manes.17G035200 Manihot esculenta HOM05D003286 ORTHO05D002463 1.8e-10 68.9 70 54.3
Glyma.13G153900 Glycine max HOM05D003286 ORTHO05D002463 2.4e-10 68.6 65 56.9
Lalb_Chr10g0101691 Lupinus albus HOM05D003286 ORTHO05D002463 2.4e-10 68.6 65 58.5
QL05p075142 Quercus lobata HOM05D003286 ORTHO05D002463 2.4e-10 68.6 66 56.1
QL93p0073_0716 Quercus lobata HOM05D003286 ORTHO05D002463 2.4e-10 68.6 66 56.1
Ca_16278_v3 Cicer arietinum L. HOM05D000120 ORTHO05D002463 3.1e-10 68.2 64 59.4
FAN24G2961 Fragaria x ananassa HOM05D003286 ORTHO05D002463 3.1e-10 68.2 76 53.9
Solyc11g011900.1 Solanum lycopersicum HOM05D003286 ORTHO05D002463 3.1e-10 68.2 68 54.4
C02p39730 Brassica napus HOM05D003286 ORTHO05D002463 5.3e-10 67.4 66 60.6
TPR.G34503 Trifolium pratense HOM05D003286 ORTHO05D002463 6.9e-10 67.0 66 56.1
Gohir.D10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 9.0e-10 66.6 65 58.5
Gorai.011G016700 Gossypium raimondii HOM05D003286 ORTHO05D002463 9.0e-10 66.6 65 58.5
RcHm_v2.0_Chr5g0003951 Rosa chinensis HOM05D003286 ORTHO05D002463 9.0e-10 66.6 76 55.3
THA.LOC104806256 Tarenaya hassleriana HOM05D003286 ORTHO05D002463 9.0e-10 66.6 70 54.3
COL.COLO4_31727 Corchorus olitorius HOM05D003286 ORTHO05D002463 1.2e-09 66.2 75 50.7
Duzib235G0679 Durio zibethinus HOM05D003286 ORTHO05D002463 1.2e-09 66.2 70 52.9
FvH4_3g02641 Fragaria vesca HOM05D000218 ORTHO05D000125 1.2e-09 66.2 69 56.5
Glyma.U031417 Glycine max HOM05D003286 ORTHO05D002463 1.5e-09 65.9 71 50.7
Cfa000701 Carpinus fangiana HOM05D003286 ORTHO05D002463 2.0e-09 65.5 60 60.0
Peaxi162Scf00063g00244 Petunia axillaris HOM05D003286 ORTHO05D002463 2.0e-09 65.5 68 51.5
Thecc.06G214200 Theobroma cacao HOM05D003286 ORTHO05D002463 2.0e-09 65.5 74 55.4
FAN15G1751 Fragaria x ananassa HOM05D003286 ORTHO05D002463 2.6e-09 65.1 76 51.3
Phvul.002G250900 Phaseolus vulgaris HOM05D003286 ORTHO05D002463 2.6e-09 65.1 66 56.1
FAN27G1731 Fragaria x ananassa HOM05D003286 ORTHO05D002463 3.4e-09 64.7 77 49.4
VMungo0251G0596 Vigna mungo HOM05D003286 ORTHO05D002463 3.4e-09 64.7 66 56.1
FvH4_2g19820 Fragaria vesca HOM05D003286 ORTHO05D002463 5.8e-09 63.9 70 54.3
Potri.004G022400 Populus trichocarpa HOM05D003286 ORTHO05D002463 5.8e-09 63.9 73 52.1
Gohir.A10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 7.6e-09 63.5 65 56.9
Manes.16G012200 Manihot esculenta HOM05D003286 ORTHO05D002463 1.0e-08 63.2 69 52.2
Psat5g122680 Pisum sativum HOM05D003286 ORTHO05D002463 1.3e-08 62.8 66 54.5
BolC9t53168H Brassica oleracea HOM05D003286 ORTHO05D002463 1.7e-08 62.4 72 54.2
Gohir.A10G211300 Gossypium hirsutum HOM05D003286 ORTHO05D002463 2.9e-08 61.6 62 56.5
Lj2g0008596 Lotus japonicus HOM05D003286 ORTHO05D002463 2.9e-08 61.6 73 53.4
Psat6g165560 Pisum sativum HOM05D003286 ORTHO05D002463 2.9e-08 61.6 66 53.0
CAN.G222.170 Capsicum annuum HOM05D003286 ORTHO05D002463 3.8e-08 61.2 62 51.6
MBI02_g21870_MAGBIO Magnolia biondii HOM05D003286 ORTHO05D002463 3.8e-08 61.2 66 51.5
Nn1g08164 Nelumbo nucifera HOM05D003286 ORTHO05D002463 4.9e-08 60.8 67 49.3
Prupe.4G026000 Prunus persica HOM05D003286 ORTHO05D002463 4.9e-08 60.8 64 53.1
A09p02270 Brassica napus HOM05D003286 ORTHO05D002463 6.5e-08 60.5 76 50.0
BraA09t35876Z Brassica rapa HOM05D003286 ORTHO05D002463 6.5e-08 60.5 76 50.0
Ciclev10018056m.g Citrus clementina HOM05D003286 ORTHO05D002463 6.5e-08 60.5 65 50.8
Cc07_g12950 Coffea canephora HOM05D003286 ORTHO05D002463 6.5e-08 60.5 73 46.6
Duzib160G0656 Durio zibethinus HOM05D003286 ORTHO05D002463 6.5e-08 60.5 70 50.0
Lj1P1225T26 Lonicera japonica HOM05D003286 ORTHO05D002463 6.5e-08 60.5 59 59.3
Cfa000276 Carpinus fangiana HOM05D003286 ORTHO05D002463 8.4e-08 60.1 65 49.2
Dinv20018 Davidia involucrata HOM05D000218 ORTHO05D000125 1.1e-07 59.7 43 67.4
MELO3C007371.2 Cucumis melo HOM05D003286 ORTHO05D002463 1.4e-07 59.3 70 48.6
DCAR_030615 Daucus carota HOM05D003286 ORTHO05D002463 1.4e-07 59.3 73 46.6
Nn1g03635 Nelumbo nucifera HOM05D003286 ORTHO05D002463 1.4e-07 59.3 67 47.8
CsaV3_6G049250 Cucumis sativus L. HOM05D003286 ORTHO05D002463 1.9e-07 58.9 70 48.6
Eucgr.E03707 Eucalyptus grandis HOM05D003286 ORTHO05D002463 1.9e-07 58.9 67 50.7
Sed0004843 Sechium edule HOM05D003286 ORTHO05D002463 1.9e-07 58.9 64 53.1
GSVIVG01012631001 Vitis vinifera HOM05D003286 ORTHO05D002463 1.9e-07 58.9 75 46.7
Lj1g0012071 Lotus japonicus HOM05D003286 ORTHO05D002463 2.5e-07 58.5 58 56.9
C09p02370 Brassica napus HOM05D003286 ORTHO05D002463 3.2e-07 58.2 62 54.8
Thecc.10G122300 Theobroma cacao HOM05D003286 ORTHO05D002463 5.5e-07 57.4 73 47.9
Sabra04G0012200 Salix brachista HOM05D003286 ORTHO05D002463 1.6e-06 55.8 65 49.2
Aqoxy1G02958 Aquilegia oxysepala HOM05D003286 ORTHO05D002463 3.5e-06 54.7 74 41.9
ClCG01G022170 Citrullus lanatus HOM05D003286 ORTHO05D002463 3.5e-06 54.7 66 47.0
PSO675G8889 Papaver somniferum HOM05D003286 ORTHO05D002463 4.6e-06 54.3 70 44.3
Oeu009440.1 Olea europaea HOM05D003286 ORTHO05D002463 6.0e-06 53.9 73 39.7


User provided reference genes

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