Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 1.3e-196 689.5 337 100.0
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 1.2e-173 613.2 328 89.9
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 2.2e-172 609.0 338 87.9
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 4.9e-172 607.8 335 88.1
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 2.1e-167 592.4 338 86.4
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 3.2e-163 578.6 337 84.3
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 1.7e-151 539.7 329 80.5
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 8.2e-151 537.3 329 79.3
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 1.1e-150 537.0 329 79.0
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 1.4e-147 526.6 330 77.9
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 2.5e-147 525.8 330 77.9
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 3.9e-145 518.5 315 79.4
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 2.6e-144 515.8 333 76.6
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 3.3e-144 515.4 334 74.6
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 4.4e-136 488.4 337 69.7
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 5.7e-136 488.0 337 69.4
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 7.4e-136 487.6 337 69.4
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 1.3e-135 486.9 331 71.0
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.7e-135 486.5 337 69.4
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 3.7e-135 485.3 328 71.0
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 3.7e-135 485.3 334 68.9
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 3.7e-135 485.3 331 70.1
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 4.8e-135 485.0 338 68.0
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 1.4e-134 483.4 335 68.4
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 1.8e-134 483.0 338 68.0
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 4.1e-134 481.9 329 68.7
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 5.3e-134 481.5 338 69.2
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 9.1e-134 480.7 338 68.0
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 3.5e-133 478.8 337 68.2
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 4.5e-133 478.4 329 68.1
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 4.5e-133 478.4 331 69.8
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 7.7e-133 477.6 333 67.6
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 1.7e-132 476.5 334 67.4
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 2.9e-132 475.7 338 68.3
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 2.9e-132 475.7 337 68.0
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 3.8e-132 475.3 333 70.3
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 3.8e-132 475.3 329 69.6
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 3.8e-132 475.3 342 66.7
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 8.5e-132 474.2 338 67.2
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 1.5e-131 473.4 337 65.9
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 1.9e-131 473.0 333 69.7
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 1.9e-131 473.0 328 67.7
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 4.2e-131 471.9 338 68.0
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 1.2e-130 470.3 338 67.5
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 6.1e-130 468.0 328 68.0
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 6.1e-130 468.0 339 65.8
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 6.1e-130 468.0 332 68.1
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 1.0e-129 467.2 328 69.2
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 1.0e-129 467.2 340 68.5
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 4.0e-129 465.3 340 64.7
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 4.0e-129 465.3 335 67.8
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 5.2e-129 464.9 338 64.5
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 1.2e-128 463.8 333 67.0
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 1.5e-128 463.4 335 66.6
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 2.0e-128 463.0 333 67.0
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 2.6e-128 462.6 328 68.0
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 3.4e-128 462.2 338 66.3
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 5.7e-128 461.5 328 66.5
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 9.8e-128 460.7 338 65.7
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 1.7e-127 459.9 329 66.9
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 3.7e-127 458.8 333 65.5
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 8.3e-127 457.6 340 66.2
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 8.3e-127 457.6 331 67.1
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 1.1e-126 457.2 331 65.9
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.1e-126 457.2 329 66.9
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 4.1e-126 455.3 328 67.7
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 4.1e-126 455.3 341 64.5
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 5.4e-126 454.9 328 66.8
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 9.1e-126 454.1 338 65.4
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 9.1e-126 454.1 330 65.8
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 1.2e-125 453.8 334 63.2
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 1.6e-125 453.4 329 66.9
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 2.0e-125 453.0 334 64.4
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 3.5e-125 452.2 333 64.9
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 5.9e-125 451.4 329 65.7
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 7.7e-125 451.1 332 65.4
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 1.0e-124 450.7 328 64.6
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 1.0e-124 450.7 334 65.0
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 1.3e-124 450.3 329 65.3
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 1.3e-124 450.3 329 65.3
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 1.7e-124 449.9 333 62.5
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 1.7e-124 449.9 338 63.3
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 1.7e-124 449.9 329 65.3
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 2.2e-124 449.5 332 64.5
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 2.2e-124 449.5 331 65.3
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 6.5e-124 448.0 331 65.3
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 4.2e-123 445.3 338 66.3
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 7.2e-123 444.5 329 66.3
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 1.2e-122 443.7 336 64.3
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 1.6e-122 443.4 340 62.4
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 2.1e-122 443.0 338 63.9
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 2.1e-122 443.0 338 61.8
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 2.1e-122 443.0 331 64.7
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 2.7e-122 442.6 329 64.7
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 4.7e-122 441.8 338 62.1
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 6.1e-122 441.4 332 64.2
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 3.4e-120 435.6 330 63.6
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 7.5e-120 434.5 337 61.7
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 9.8e-120 434.1 333 63.4
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 1.1e-118 430.6 346 61.6
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 1.4e-118 430.3 329 62.6
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 7.0e-118 427.9 331 63.4
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 2.7e-117 426.0 282 78.0
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 8.6e-116 421.0 333 62.8
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 1.5e-115 420.2 328 59.1
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 9.5e-115 417.5 337 60.8
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 1.2e-114 417.2 337 60.8
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 4.0e-113 412.1 331 62.2
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 5.2e-113 411.8 334 59.9
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 9.8e-112 407.5 319 62.4
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 5.4e-110 401.7 330 60.6
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 9.2e-110 401.0 302 64.2
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 9.5e-107 391.0 324 57.4
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 2.8e-106 389.4 292 63.7
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 1.0e-105 387.5 290 65.9
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 2.2e-103 379.8 382 50.0
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 1.2e-101 374.0 328 57.3
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 2.5e-99 366.3 336 55.7
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 7.8e-93 344.7 257 65.4
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 6.6e-92 341.7 257 65.0
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 7.8e-85 318.2 346 48.6
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 3.3e-83 312.8 343 46.6
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 4.3e-83 312.4 218 71.6
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 8.1e-82 308.1 341 47.8
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 3.1e-81 306.2 377 44.8
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 5.2e-81 305.4 210 70.0
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 4.2e-78 295.8 315 52.4
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 3.4e-72 276.2 328 46.0
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 5.8e-72 275.4 276 52.2
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 6.4e-71 271.9 404 39.6
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 4.2e-70 269.2 251 53.4
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 3.5e-61 239.6 192 59.4
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 7.6e-56 221.9 188 51.1
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 4.2e-54 216.1 375 36.8
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 9.3e-54 214.9 207 51.2
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 1.2e-45 188.0 155 58.1
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 1.5e-43 181.0 247 40.1
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 7.4e-43 178.7 143 60.1
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 1.8e-41 174.1 328 35.7
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 2.0e-40 170.6 153 53.6
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 1.0e-39 168.3 123 66.7
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 7.2e-38 162.2 137 56.9
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 7.2e-38 162.2 137 56.9
Glyma.02G261300 Glycine max HOM05D004754 ORTHO05D005566 5.1e-28 129.4 81 74.1
Psat5g233560 Pisum sativum HOM05D004754 ORTHO05D005566 8.8e-28 128.6 112 59.8
Glyma.02G261200 Glycine max HOM05D004754 ORTHO05D005566 5.3e-25 119.4 90 57.8
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 9.1e-25 118.6 152 44.1
Cre07.g312100 Chlamydomonas reinhardtii HOM05D004754 ORTHO05D005566 3.0e-20 103.6 406 24.6
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 5.5e-14 82.8 75 52.0
Lj6C128T1 Lonicera japonica HOM05D004754 ORTHO05D005566 4.7e-13 79.7 75 48.0
Lju897C0T7 Lonicera japonica HOM05D004754 ORTHO05D005566 9.8e-11 72.0 75 45.3
Potri.006G050600 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.2e-08 65.1 51 66.7
Potri.017G049500 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.6e-08 64.7 38 71.1
Lju897C2T5 Lonicera japonica HOM05D004754 ORTHO05D005566 8.5e-07 58.9 67 41.8
HPP92_027352 Vanilla planifolia HOM05D004754 ORTHO05D005566 2.5e-06 57.4 71 38.0


User provided reference genes

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