Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 3.0e-243 844.7 426 100.0
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 5.9e-130 468.4 418 65.6
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.9e-108 396.4 428 54.7
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.8e-102 377.1 428 54.7
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 4.0e-102 375.9 252 79.8
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.0e-97 361.3 430 50.5
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 1.7e-97 360.5 408 52.7
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 1.2e-95 354.4 424 50.5
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 6.2e-95 352.1 430 50.7
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 8.1e-95 351.7 425 51.1
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 3.1e-94 349.7 445 49.0
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 5.2e-94 349.0 427 50.8
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 8.9e-94 348.2 435 49.4
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 1.5e-93 347.4 419 49.2
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 3.7e-92 342.8 435 49.2
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 5.4e-91 339.0 424 50.0
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.2e-90 337.8 435 48.7
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.2e-90 337.8 427 48.9
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 4.6e-90 335.9 425 46.8
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 3.9e-89 332.8 423 49.4
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 5.1e-89 332.4 425 46.4
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 6.6e-89 332.0 418 46.9
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 6.2e-87 325.5 421 48.2
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 3.1e-86 323.2 428 47.2
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 3.1e-86 323.2 428 47.7
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 4.0e-86 322.8 427 48.2
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 6.8e-86 322.0 441 45.6
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 6.8e-86 322.0 404 49.5
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 8.4e-84 315.1 421 47.3
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 7.1e-83 312.0 421 47.0
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 7.8e-82 308.5 418 48.8
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 1.9e-80 303.9 424 45.0
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 7.3e-80 302.0 416 47.1
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 6.2e-79 298.9 428 46.5
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 2.0e-77 293.9 452 44.0
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 4.4e-77 292.7 396 47.0
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 1.3e-76 291.2 363 49.3
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 2.3e-73 280.4 417 45.8
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 6.9e-70 268.9 370 45.7
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 8.4e-68 261.9 422 40.0
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 1.4e-67 261.2 419 43.9
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 2.1e-66 257.3 423 39.7
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 3.5e-66 256.5 462 37.9
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 4.6e-66 256.1 429 39.6
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 1.0e-65 255.0 451 37.9
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.3e-65 254.6 429 39.6
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 1.3e-65 254.6 410 41.7
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 3.0e-65 253.4 444 39.4
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 3.9e-65 253.1 429 39.2
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 3.9e-65 253.1 429 39.4
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 3.9e-65 253.1 429 39.4
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 5.1e-65 252.7 390 40.8
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 5.1e-65 252.7 390 40.8
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 1.1e-64 251.5 431 39.2
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.9e-64 250.8 390 40.5
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 3.3e-64 250.0 453 38.4
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 7.4e-64 248.8 390 40.5
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 1.3e-63 248.1 418 39.0
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 1.3e-63 248.1 454 37.4
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 1.6e-63 247.7 437 37.1
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 2.8e-63 246.9 447 38.0
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 4.8e-63 246.1 381 41.7
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 4.8e-63 246.1 438 38.1
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 6.2e-63 245.7 416 40.6
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 6.2e-63 245.7 406 38.4
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 6.2e-63 245.7 390 41.5
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 6.2e-63 245.7 454 36.8
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 1.1e-62 245.0 424 38.4
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 1.8e-62 244.2 454 37.2
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 1.8e-62 244.2 406 40.9
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 2.4e-62 243.8 428 38.3
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 2.4e-62 243.8 390 39.7
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 3.1e-62 243.4 450 38.2
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 4.0e-62 243.0 435 37.5
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 5.3e-62 242.7 432 38.4
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 6.9e-62 242.3 390 41.5
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 6.9e-62 242.3 442 36.9
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 2.0e-61 240.7 414 38.6
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 3.4e-61 240.0 448 37.1
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 3.4e-61 240.0 447 36.7
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 5.8e-61 239.2 384 42.4
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 7.6e-61 238.8 403 41.2
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.3e-60 238.0 391 39.6
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 2.9e-60 236.9 424 38.9
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 3.8e-60 236.5 451 36.8
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 4.9e-60 236.1 403 40.0
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 1.1e-59 235.0 424 37.7
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.9e-59 234.2 372 41.7
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 1.9e-59 234.2 464 38.4
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 1.9e-59 234.2 431 36.2
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 3.2e-59 233.4 421 37.5
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 3.2e-59 233.4 413 38.7
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 3.2e-59 233.4 420 37.1
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 5.5e-59 232.6 454 36.3
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 9.3e-59 231.9 454 36.1
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 1.6e-58 231.1 408 37.5
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 1.6e-58 231.1 409 39.4
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 2.7e-58 230.3 390 39.7
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 3.5e-58 229.9 439 36.7
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 6.0e-58 229.2 460 35.0
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 6.0e-58 229.2 432 36.3
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 7.9e-58 228.8 165 74.5
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 1.0e-57 228.4 373 41.0
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 3.0e-57 226.9 291 47.4
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 3.0e-57 226.9 403 38.2
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 3.9e-57 226.5 390 38.7
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 6.7e-57 225.7 456 35.5
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 8.7e-57 225.3 457 35.4
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 2.1e-55 220.7 464 35.8
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 2.1e-55 220.7 398 37.9
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 1.4e-54 218.0 387 37.0
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 1.4e-54 218.0 426 34.3
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 4.0e-54 216.5 387 38.5
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 2.6e-53 213.8 378 38.1
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 1.0e-52 211.8 382 37.4
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 8.4e-52 208.8 357 40.9
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 1.4e-51 208.0 458 35.2
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 2.5e-51 207.2 488 32.6
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 2.1e-50 204.1 389 33.4
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 3.0e-49 200.3 363 37.7
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 3.0e-49 200.3 386 37.6
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 4.8e-47 193.0 258 45.0
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 3.8e-44 183.3 258 45.3
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 6.5e-44 182.6 332 39.5
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 2.7e-42 177.2 132 74.2
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 3.6e-42 176.8 415 33.0
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 1.8e-41 174.5 403 33.3
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 3.3e-40 170.2 469 32.6
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 1.3e-39 168.3 354 36.2
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 6.7e-33 146.0 297 35.0
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 8.8e-33 145.6 307 35.2
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 8.8e-33 145.6 154 54.5
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 3.7e-31 140.2 363 30.9
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 4.8e-31 139.8 285 34.4
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 1.1e-30 138.7 279 34.8
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 4.5e-29 133.3 199 39.7
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 5.9e-29 132.9 201 42.8
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 5.9e-29 132.9 326 31.0
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 7.2e-27 125.9 116 58.6
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 6.3e-23 112.8 389 30.8
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 3.1e-22 110.5 339 27.4
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 7.0e-22 109.4 268 35.4
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 1.5e-19 101.7 132 40.9
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 5.5e-19 99.8 243 32.9
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.2e-18 98.6 147 41.5
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 2.0e-16 91.3 99 44.4
BcaB05g23891 Brassica carinata HOM05D003798 ORTHO05D004652 1.3e-15 88.6 122 42.6
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 2.8e-15 87.4 95 44.2
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 2.8e-15 87.4 133 45.1
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 1.8e-14 84.7 174 37.4
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 3.1e-14 84.0 127 36.2
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 7.0e-14 82.8 259 29.7
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 1.2e-13 82.0 285 26.3
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 1.6e-13 81.6 274 27.4
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 5.9e-13 79.7 174 36.8
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.5e-11 75.1 109 43.1
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 3.2e-11 73.9 116 37.9
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 4.2e-11 73.6 114 41.2
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 9.4e-11 72.4 143 34.3
CARHR251120 Cardamine hirsuta HOM05D003798 ORTHO05D004652 6.1e-10 69.7 69 56.5
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 1.4e-09 68.6 120 37.5
arahy.Tifrunner.gnm1.ann1.FYU6J1 Arachis hypogaea HOM05D000331 ORTHO05D021523 1.5e-08 65.1 61 50.8
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 5.7e-08 63.2 60 48.3
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 7.5e-08 62.8 81 46.9
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 7.5e-08 62.8 58 51.7
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.1e-06 58.9 61 49.2
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.4e-06 57.8 91 42.9
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 2.4e-06 57.8 79 49.4
C06p11990 Brassica napus HOM05D003798 ORTHO05D004652 7.0e-06 56.2 86 45.3
AL1G36770 Arabidopsis lyrata HOM05D003496 ORTHO05D023659 9.1e-06 55.8 128 26.6


User provided reference genes

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