Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 5.1e-134 481.9 421 100.0
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 8.8e-118 427.9 421 92.2
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 2.1e-111 406.8 430 90.0
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 7.4e-109 398.3 423 81.6
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 5.9e-106 388.7 428 87.4
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 2.1e-103 380.2 423 88.4
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 8.0e-103 378.3 441 84.4
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 8.8e-102 374.8 422 86.0
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 1.7e-97 360.5 422 71.3
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 2.2e-92 343.6 422 70.6
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 8.2e-92 341.7 424 73.3
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 5.3e-91 339.0 424 70.3
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 5.9e-90 335.5 424 72.4
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 1.3e-89 334.3 421 69.6
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 1.0e-86 324.7 440 81.6
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 5.7e-85 318.9 434 80.2
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 6.3e-84 315.5 442 81.4
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 3.1e-83 313.2 442 75.3
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 5.0e-81 305.8 424 70.5
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 2.1e-79 300.4 424 69.1
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 2.6e-77 293.5 424 46.2
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 4.9e-76 289.3 182 86.3
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 4.1e-75 286.2 187 85.6
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 1.2e-74 284.6 424 53.5
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 1.2e-74 284.6 419 65.4
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 4.5e-74 282.7 447 72.9
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 7.8e-74 282.0 429 75.5
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 1.3e-73 281.2 157 91.1
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 1.7e-73 280.8 425 65.4
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 3.8e-73 279.6 182 86.8
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 1.5e-72 277.7 453 71.3
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 9.5e-72 275.0 454 71.1
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 2.8e-71 273.5 420 77.1
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 8.0e-71 271.9 457 67.4
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 1.4e-70 271.2 417 66.4
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 1.8e-70 270.8 458 67.5
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 5.2e-70 269.2 419 73.0
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 5.2e-70 269.2 425 72.5
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 6.8e-70 268.9 417 71.5
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 6.8e-70 268.9 420 50.0
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 8.9e-70 268.5 419 72.1
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 8.9e-70 268.5 425 71.3
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 2.0e-69 267.3 180 82.8
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 2.0e-69 267.3 180 82.8
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 2.6e-69 266.9 425 75.1
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 2.6e-69 266.9 426 66.2
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 3.4e-69 266.5 432 76.4
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 5.8e-69 265.8 413 76.8
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 7.5e-69 265.4 423 71.6
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 7.5e-69 265.4 407 71.3
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 1.3e-68 264.6 434 68.2
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 1.7e-68 264.2 428 76.2
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 2.9e-68 263.5 444 75.9
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 2.9e-68 263.5 429 73.4
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 2.9e-68 263.5 434 68.2
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 2.9e-68 263.5 434 70.7
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 8.3e-68 261.9 134 97.0
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 8.3e-68 261.9 427 70.3
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 1.9e-67 260.8 417 66.2
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 1.9e-67 260.8 426 73.9
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 2.4e-67 260.4 134 97.0
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 3.2e-67 260.0 436 68.1
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 4.1e-67 259.6 419 65.6
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 4.1e-67 259.6 427 65.3
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 7.0e-67 258.8 427 61.6
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 1.6e-66 257.7 421 72.4
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 2.0e-66 257.3 442 69.7
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 3.5e-66 256.5 410 58.8
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 4.6e-66 256.1 426 67.8
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 1.0e-65 255.0 409 75.1
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 1.7e-65 254.2 413 65.4
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 1.7e-65 254.2 432 68.3
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 2.3e-65 253.8 442 74.4
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 2.3e-65 253.8 421 70.1
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 5.0e-65 252.7 184 72.8
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 5.0e-65 252.7 182 75.3
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 6.6e-65 252.3 421 73.2
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 8.6e-65 251.9 442 63.8
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 1.1e-64 251.5 184 74.5
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 1.9e-64 250.8 134 93.3
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 1.9e-64 250.8 186 73.1
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 1.9e-64 250.8 421 73.2
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 2.5e-64 250.4 187 75.4
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 2.5e-64 250.4 422 69.9
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 3.3e-64 250.0 427 62.3
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 3.3e-64 250.0 408 64.7
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 5.6e-64 249.2 184 71.2
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 5.6e-64 249.2 185 74.6
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 7.3e-64 248.8 181 76.2
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 7.3e-64 248.8 415 67.5
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 9.5e-64 248.4 458 64.2
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 9.5e-64 248.4 425 72.7
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 1.2e-63 248.1 162 80.2
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 2.8e-63 246.9 460 63.3
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.8e-63 246.9 426 72.3
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 3.6e-63 246.5 463 66.3
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 3.6e-63 246.5 172 77.3
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 4.7e-63 246.1 172 75.0
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 6.2e-63 245.7 184 72.8
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 6.2e-63 245.7 452 60.6
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 6.2e-63 245.7 441 66.0
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 8.0e-63 245.4 177 74.6
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 1.4e-62 244.6 180 75.6
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 1.4e-62 244.6 182 72.0
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 3.1e-62 243.4 427 61.1
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 3.1e-62 243.4 188 72.9
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 3.1e-62 243.4 188 73.4
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 3.1e-62 243.4 188 73.4
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 4.0e-62 243.0 160 79.4
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 4.0e-62 243.0 161 78.3
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 4.0e-62 243.0 178 73.0
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 4.0e-62 243.0 450 72.0
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 4.0e-62 243.0 419 70.2
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 1.2e-61 241.5 424 72.9
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 1.2e-61 241.5 448 65.8
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 2.6e-61 240.4 181 72.4
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 3.4e-61 240.0 423 72.1
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 3.4e-61 240.0 159 78.0
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 4.4e-61 239.6 166 75.3
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 5.8e-61 239.2 165 77.0
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 5.8e-61 239.2 171 74.9
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 9.8e-61 238.4 165 77.0
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 1.7e-60 237.7 462 67.7
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 2.2e-60 237.3 184 71.2
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 4.9e-60 236.1 433 73.7
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 6.4e-60 235.7 462 69.5
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 8.3e-60 235.3 177 73.4
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 1.9e-59 234.2 413 72.2
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 2.4e-59 233.8 185 70.8
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 1.2e-58 231.5 162 73.5
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 1.6e-58 231.1 162 73.5
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 2.1e-58 230.7 412 69.4
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 2.7e-58 230.3 454 58.1
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 7.8e-58 228.8 146 80.1
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.3e-57 228.0 409 72.1
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 3.9e-57 226.5 454 59.5
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 9.5e-56 221.9 182 68.1
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 9.5e-56 221.9 430 51.9
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 2.3e-54 217.2 391 72.6
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 2.9e-52 210.3 133 80.5
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 1.1e-48 198.4 133 79.7
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 1.9e-48 197.6 153 73.9
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 3.3e-48 196.8 419 53.2
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 1.2e-47 194.9 105 92.4
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 2.2e-44 184.1 167 63.5
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 3.9e-41 173.3 187 56.1
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 1.1e-40 171.8 130 74.6
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 3.3e-40 170.2 86 98.8
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 8.1e-39 165.6 106 78.3
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 1.1e-38 165.2 140 67.1
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 1.8e-38 164.5 103 83.5
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 2.4e-38 164.1 86 95.3
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 1.2e-37 161.8 153 60.1
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 2.6e-37 160.6 389 62.2
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 4.9e-36 156.4 107 72.0
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 2.4e-35 154.1 87 88.5
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 7.1e-35 152.5 87 87.4
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 2.5e-32 144.1 159 51.6
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 2.6e-29 134.0 169 49.1
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 7.6e-29 132.5 70 95.7
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 4.9e-28 129.8 70 94.3
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 8.4e-28 129.0 167 47.9
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 3.5e-26 123.6 70 85.7
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 6.0e-26 122.9 69 91.3
BraA09t40883Z Brassica rapa HOM05D003848 ORTHO05D004616 6.0e-26 122.9 93 76.3
C03p93060 Brassica napus HOM05D003848 ORTHO05D004616 2.8e-23 114.0 87 70.1
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 9.9e-21 105.5 65 80.0
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 6.4e-20 102.8 177 45.2
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 4.2e-19 100.1 58 79.3
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.7e-18 97.4 332 69.3
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 1.0e-17 95.5 56 87.5
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 9.6e-16 89.0 56 80.4
BolC3t21614H Brassica oleracea HOM05D003848 ORTHO05D004616 1.6e-15 88.2 71 64.8
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 7.6e-13 79.3 55 72.7
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 1.1e-11 75.5 188 37.8
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 9.3e-11 72.4 70 60.0
BNapus_Darmor_BZH_scaffold_38p02420 Brassica napus HOM05D003848 ORTHO05D004616 3.9e-09 67.0 34 91.2
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 1.9e-08 64.7 87 52.9


User provided reference genes

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