Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g02470 Schrenkiella parvula HOM05D002567 ORTHO05D006538 0.0e+00 1713.4 936 100.0
BcaB05g23644 Brassica carinata HOM05D002567 ORTHO05D006538 0.0e+00 1446.8 979 81.1
Carub.0006s3458 Capsella rubella HOM05D002567 ORTHO05D006538 0.0e+00 1411.4 943 81.0
AL6G50490 Arabidopsis lyrata HOM05D002567 ORTHO05D006538 0.0e+00 1406.0 955 81.9
AT4G02560 Arabidopsis thaliana HOM05D002567 ORTHO05D006538 0.0e+00 1402.1 957 81.5
CARHR250850 Cardamine hirsuta HOM05D002567 ORTHO05D006538 0.0e+00 1395.6 946 80.7
A02p24870 Brassica napus HOM05D002567 ORTHO05D006538 0.0e+00 1389.4 962 80.8
BraA02t07474Z Brassica rapa HOM05D002567 ORTHO05D006538 0.0e+00 1389.4 962 80.8
C02p39290 Brassica napus HOM05D002567 ORTHO05D006538 0.0e+00 1386.7 962 80.8
BolC2t09940H Brassica oleracea HOM05D002567 ORTHO05D006538 0.0e+00 1386.7 962 80.8
Thhalv10028403m.g Eutrema salsugineum HOM05D002567 ORTHO05D006538 0.0e+00 1378.6 948 81.5
BcaC03g16147 Brassica carinata HOM05D002567 ORTHO05D006538 0.0e+00 1371.7 946 81.5
Aa31LG5G2190 Aethionema arabicum HOM05D002567 ORTHO05D006538 0.0e+00 1096.6 1017 65.5
THA.LOC104815934 Tarenaya hassleriana HOM05D002567 ORTHO05D006538 4.9e-302 1041.2 987 61.3
Cpa.g.sc9.189 Carica papaya HOM05D002567 ORTHO05D006538 7.4e-210 734.9 1069 45.4
Thecc.01G293900 Theobroma cacao HOM05D002567 ORTHO05D006538 1.8e-208 730.3 858 51.6
Prupe.8G255600 Prunus persica HOM05D002567 ORTHO05D006538 1.7e-201 707.2 989 46.4
Duzib138G0932 Durio zibethinus HOM05D002567 ORTHO05D006538 1.8e-200 703.7 1081 45.1
COL.COLO4_07998 Corchorus olitorius HOM05D002567 ORTHO05D006538 2.4e-200 703.4 844 51.1
CiPaw.07G103600 Carya illinoinensis HOM05D002567 ORTHO05D006538 1.7e-198 697.2 861 50.3
Gorai.004G088100 Gossypium raimondii HOM05D002567 ORTHO05D006538 3.0e-195 686.4 1064 44.8
TWI14G0289 Tripterygium wilfordii HOM05D002567 ORTHO05D006538 5.2e-195 685.6 1035 44.6
Gohir.D08G083700 Gossypium hirsutum HOM05D002567 ORTHO05D006538 1.5e-194 684.1 1043 45.0
QL12p030584 Quercus lobata HOM05D002567 ORTHO05D006538 1.7e-193 680.6 1018 44.7
Gohir.A08G074400 Gossypium hirsutum HOM05D002567 ORTHO05D006538 1.8e-192 677.2 1064 44.5
Potri.002G209216 Populus trichocarpa HOM05D002567 ORTHO05D006538 1.6e-191 674.1 942 46.0
MD11G1302000 Malus domestica HOM05D002567 ORTHO05D006538 2.8e-188 663.3 1002 45.5
Sabra02G0150900 Salix brachista HOM05D002567 ORTHO05D006538 1.5e-186 657.5 941 45.2
MD03G1284300 Malus domestica HOM05D002567 ORTHO05D006538 3.4e-186 656.4 1005 44.5
CANSAT25G2282 Cannabis sativa HOM05D002567 ORTHO05D006538 5.7e-186 655.6 837 47.8
TWI59G0117 Tripterygium wilfordii HOM05D002567 ORTHO05D006538 8.3e-185 651.7 876 46.8
Atru.chr5.1232 Acer truncatum HOM05D002567 ORTHO05D006538 1.4e-184 651.0 1058 43.2
Potri.014G132800 Populus trichocarpa HOM05D002567 ORTHO05D006538 2.1e-180 637.1 953 44.2
Ciclev10018617m.g Citrus clementina HOM05D002567 ORTHO05D006538 1.4e-179 634.4 1080 42.7
Dinv33021 Davidia involucrata HOM05D002567 ORTHO05D006538 5.2e-179 632.5 1037 43.5
Cc01_g20510 Coffea canephora HOM05D002567 ORTHO05D006538 6.8e-179 632.1 839 47.6
Glyma.19G208700 Glycine max HOM05D002567 ORTHO05D006538 1.2e-178 631.3 1088 41.2
RcHm_v2.0_Chr6g0293161 Rosa chinensis HOM05D002567 ORTHO05D006538 3.4e-178 629.8 947 44.8
Glyma.03G211500 Glycine max HOM05D002567 ORTHO05D006538 7.5e-178 628.6 810 48.0
GSVIVG01010967001 Vitis vinifera HOM05D002567 ORTHO05D006538 4.9e-177 625.9 804 48.8
CsaV3_7G028930 Cucumis sativus L. HOM05D002567 ORTHO05D006538 6.4e-177 625.5 873 47.2
Haze_04858 Corylus avellana HOM05D002567 ORTHO05D006538 1.8e-176 624.0 1048 42.1
FvH4_2g25100 Fragaria vesca HOM05D002567 ORTHO05D006538 1.8e-176 624.0 1002 42.8
Lsat_1_v5_gn_8_54500 Lactuca sativa HOM05D002567 ORTHO05D006538 1.6e-175 620.9 929 45.0
Lalb_Chr15g0078671 Lupinus albus HOM05D002567 ORTHO05D006538 4.6e-175 619.4 980 43.4
MELO3C016045.2 Cucumis melo HOM05D002567 ORTHO05D006538 1.3e-174 617.8 1112 40.5
Lj1g0027200 Lotus japonicus HOM05D002567 ORTHO05D006538 1.1e-173 614.8 945 43.1
ClCG09G006200 Citrullus lanatus HOM05D002567 ORTHO05D006538 1.9e-173 614.0 1016 43.5
ECA236G0908 Erigeron canadensis HOM05D002567 ORTHO05D006538 2.5e-173 613.6 807 47.7
Nn5g30059 Nelumbo nucifera HOM05D002567 ORTHO05D006538 4.7e-172 609.4 750 51.3
HanXRQChr04g0118111 Helianthus annuus HOM05D002567 ORTHO05D006538 6.8e-171 605.5 989 42.2
Phvul.001G204600 Phaseolus vulgaris HOM05D002567 ORTHO05D006538 1.2e-170 604.7 969 41.8
Ca_09134_v3 Cicer arietinum L. HOM05D002567 ORTHO05D006538 4.4e-170 602.8 1058 41.3
FAN24G0094 Fragaria x ananassa HOM05D002567 ORTHO05D006538 9.8e-170 601.7 1106 39.4
Medtr7g108390 Medicago truncatula HOM05D002567 ORTHO05D006538 2.2e-169 600.5 958 43.3
TAR362G0158 Trochodendron aralioides HOM05D002567 ORTHO05D006538 2.2e-169 600.5 779 48.3
Nitab4.5_0001697g0140 Nicotiana tabacum HOM05D002567 ORTHO05D006538 3.7e-169 599.7 844 44.5
PGR119G0460 Punica granatum HOM05D002567 ORTHO05D006538 3.7e-169 599.7 1001 43.5
Nn3g21405 Nelumbo nucifera HOM05D002567 ORTHO05D006538 6.4e-169 599.0 787 46.5
Sed0021907 Sechium edule HOM05D002567 ORTHO05D006538 3.2e-168 596.7 921 45.5
VMungo1383G1965 Vigna mungo HOM05D002567 ORTHO05D006538 1.6e-167 594.3 970 42.2
CAN.G1562.7 Capsicum annuum HOM05D002567 ORTHO05D006538 6.0e-167 592.4 1016 40.0
Sopen09g029570 Solanum pennellii HOM05D002567 ORTHO05D006538 2.3e-166 590.5 1030 40.6
MBI19_g12821_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 8.6e-166 588.6 758 47.4
TPR.G9283 Trifolium pratense HOM05D002567 ORTHO05D006538 6.2e-164 582.4 1140 37.7
EL10Ac7g17517 Beta vulgaris HOM05D002567 ORTHO05D006538 2.2e-161 573.9 1028 39.9
FAN20G1419 Fragaria x ananassa HOM05D002567 ORTHO05D006538 2.9e-161 573.5 933 42.2
DCAR_018344 Daucus carota HOM05D002567 ORTHO05D006538 6.4e-161 572.4 1006 41.1
Dinv19733 Davidia involucrata HOM05D002567 ORTHO05D006538 4.1e-160 569.7 647 53.2
arahy.Tifrunner.gnm1.ann1.B3NEVG Arachis hypogaea HOM05D002567 ORTHO05D006538 9.2e-160 568.5 777 47.5
Aqoxy5G00702 Aquilegia oxysepala HOM05D002567 ORTHO05D006538 1.3e-158 564.7 953 43.5
FAN15G0803 Fragaria x ananassa HOM05D002567 ORTHO05D006538 8.1e-156 555.4 934 41.1
Sopen09g029590 Solanum pennellii HOM05D002567 ORTHO05D006538 5.2e-155 552.7 875 42.7
FAN27G3038 Fragaria x ananassa HOM05D002567 ORTHO05D006538 6.8e-155 552.4 1113 38.5
Sc17g0003440 Simmondsia chinensis HOM05D002567 ORTHO05D006538 2.6e-154 550.4 921 41.0
Oeu046708.2 Olea europaea HOM05D002567 ORTHO05D006538 4.1e-152 543.1 986 40.3
AUR62033197 Chenopodium quinoa HOM05D002567 ORTHO05D006538 1.3e-150 538.1 985 39.4
Migut.D00183 Erythranthe guttata HOM05D002567 ORTHO05D006538 9.6e-149 531.9 988 41.4
vmacro02487 Vaccinium macrocarpon HOM05D002567 ORTHO05D006538 9.9e-146 521.9 889 43.0
PSO210G0804 Papaver somniferum HOM05D002567 ORTHO05D006538 1.7e-145 521.2 1080 38.7
HPP92_025217 Vanilla planifolia HOM05D002567 ORTHO05D006538 4.9e-145 519.6 979 38.8
arahy.Tifrunner.gnm1.ann1.VDB3CB Arachis hypogaea HOM05D001550 ORTHO05D001611 2.1e-143 514.2 769 44.9
Psat3g022840 Pisum sativum HOM05D002567 ORTHO05D006538 3.9e-142 510.0 995 38.7
Rhsim13G0015100 Rhododendron simsii HOM05D002567 ORTHO05D006538 1.5e-141 508.1 949 40.6
PSO832G4557 Papaver somniferum HOM05D002567 ORTHO05D006538 2.1e-140 504.2 1080 38.1
Hund18109 Selenicereus undatus HOM05D002567 ORTHO05D006538 1.4e-139 501.5 1026 38.0
Solyc09g074730.3 Solanum lycopersicum HOM05D002567 ORTHO05D006538 3.4e-138 496.9 729 44.2
Nitab4.5_0001447g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 9.3e-136 488.8 790 41.4
AUR62043270 Chenopodium quinoa HOM05D002567 ORTHO05D006538 3.0e-134 483.8 1006 36.4
CDE11G0231 Ceratophyllum demersum HOM05D002567 ORTHO05D006538 5.1e-134 483.0 647 44.7
arahy.Tifrunner.gnm1.ann1.8D3299 Arachis hypogaea HOM05D002567 ORTHO05D006538 7.4e-133 479.2 691 46.6
Lalb_Chr18g0047271 Lupinus albus HOM05D002567 ORTHO05D006538 1.1e-131 475.3 466 58.2
ATR0706G272 Amborella trichopoda HOM05D002567 ORTHO05D006538 2.4e-128 464.2 801 40.7
Lj2C1188T12 Lonicera japonica HOM05D002567 ORTHO05D006538 1.5e-125 454.9 466 56.4
Eucgr.H01191 Eucalyptus grandis HOM05D002567 ORTHO05D006538 3.4e-122 443.7 809 40.0
Zm00001eb142180 Zea mays HOM05D002567 ORTHO05D006538 2.2e-121 441.0 798 37.3
Sabra14G0099200 Salix brachista HOM05D002567 ORTHO05D006538 5.3e-115 419.9 890 36.2
SHI15302 Sapria himalayana HOM05D002567 ORTHO05D006538 2.9e-113 414.1 822 37.0
TAR633G1653 Trochodendron aralioides HOM05D002567 ORTHO05D006538 2.5e-112 411.0 387 58.9
MBI19_g13122_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 4.6e-111 406.8 652 42.9
CDE05G3083 Ceratophyllum demersum HOM05D002567 ORTHO05D006538 7.9e-111 406.0 799 36.2
SGA_v2.0_scaffold2G01415 Striga asiatica HOM05D001550 ORTHO05D006538 1.7e-108 398.3 449 50.1
Peaxi162Scf00067g01812 Petunia axillaris HOM05D002567 ORTHO05D006538 4.5e-98 363.6 441 49.4
unitig_26.g10168 Utricularia gibba HOM05D002567 ORTHO05D006538 2.8e-92 344.4 950 32.7
Solyc09g074690.3 Solanum lycopersicum HOM05D002567 ORTHO05D006538 1.2e-85 322.4 288 59.7
Manes.05G065900 Manihot esculenta HOM05D002567 ORTHO05D006538 7.0e-75 286.6 472 42.6
Actinidia28538 Actinidia chinensis HOM05D002567 ORTHO05D006538 2.3e-73 281.6 314 52.2
Os01g0934300 Oryza sativa ssp. japonica HOM05D002567 ORTHO05D006538 3.0e-70 271.2 334 47.3
Oeu011428.1 Olea europaea HOM05D002567 ORTHO05D006538 3.5e-58 231.1 210 59.0
Actinidia32249 Actinidia chinensis HOM05D002567 ORTHO05D006538 5.1e-49 200.7 411 38.9
Eucgr.H01192 Eucalyptus grandis HOM05D002567 ORTHO05D006538 1.3e-44 186.0 163 65.6
BcaB01g02031 Brassica carinata HOM05D002567 ORTHO05D006538 3.2e-43 181.4 535 33.8
Mapoly0032s0010 Marchantia polymorpha HOM05D002567 ORTHO05D006538 1.2e-42 179.5 535 31.2
Peaxi162Scf00067g01813 Petunia axillaris HOM05D002567 ORTHO05D006538 3.5e-42 177.9 230 45.2
Actinidia28539 Actinidia chinensis HOM05D002567 ORTHO05D006538 7.3e-40 170.2 383 36.3
Lj2A1188T56 Lonicera japonica HOM05D002567 ORTHO05D006538 8.9e-38 163.3 208 48.6
Lalb_Chr18g0047261 Lupinus albus HOM05D002567 ORTHO05D006538 2.0e-37 162.2 269 37.9
Solyc09g074710.2 Solanum lycopersicum HOM05D002567 ORTHO05D006538 2.6e-37 161.8 175 52.6
Pp3c7_5840 Physcomitrium patens HOM05D002567 ORTHO05D006538 7.1e-35 153.7 905 24.3
BcaC04g23997 Brassica carinata HOM05D002567 ORTHO05D006538 1.8e-30 139.0 77 85.7
Psat0s3384g0160 Pisum sativum HOM05D002567 ORTHO05D006538 6.4e-28 130.6 218 41.7
Actinidia02761 Actinidia chinensis HOM05D002567 ORTHO05D006538 5.4e-27 127.5 146 47.9
CBR_g48346 Chara braunii HOM05D002567 ORTHO05D006538 6.0e-26 124.0 299 33.8
MBI01_g23938_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 1.1e-22 113.2 86 66.3
SMO119G0396 Selaginella moellendorffii HOM05D002567 ORTHO05D006538 2.0e-21 109.0 229 33.6
MBI05_g31851_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 1.1e-19 103.2 78 65.4
Actinidia02760 Actinidia chinensis HOM05D002567 ORTHO05D006538 2.4e-19 102.1 67 76.1
Actinidia00673 Actinidia chinensis HOM05D002567 ORTHO05D006538 1.5e-16 92.8 111 46.8
TAR399G0002 Trochodendron aralioides HOM05D002567 ORTHO05D006538 3.7e-15 88.2 66 63.6
MBI02_g41934_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 5.8e-13 80.9 52 71.2
Mapoly0055s0074 Marchantia polymorpha HOM05D002567 ORTHO05D006538 2.7e-10 72.0 73 46.6
Mapoly0030s0133 Marchantia polymorpha HOM05D002567 ORTHO05D006538 7.9e-10 70.5 73 45.2
Mapoly0004s0277 Marchantia polymorpha HOM05D002567 ORTHO05D006538 1.1e-08 66.6 73 45.2
CBR_g48344 Chara braunii HOM05D002567 ORTHO05D006538 1.5e-08 66.2 194 28.9
Phvul.002G110100 Phaseolus vulgaris HOM05D002848 ORTHO05D003043 5.7e-08 64.3 72 45.8
Lj2g0018127 Lotus japonicus HOM05D002848 ORTHO05D003043 1.3e-07 63.2 241 28.2
TWI53G0820 Tripterygium wilfordii HOM05D002848 ORTHO05D003043 2.1e-07 62.4 100 41.0
CBR_g36670 Chara braunii HOM05D002848 ORTHO05D003043 4.0e-06 58.2 82 37.8
Nitab4.5_0005721g0090 Nicotiana tabacum HOM05D002848 ORTHO05D003043 4.0e-06 58.2 68 44.1
TAR381G0737 Trochodendron aralioides HOM05D002848 ORTHO05D003043 5.3e-06 57.8 87 41.4
Actinidia02762 Actinidia chinensis HOM05D002567 ORTHO05D006538 6.9e-06 57.4 114 34.2
CAN.G1671.1 Capsicum annuum HOM05D002848 ORTHO05D003043 9.0e-06 57.0 113 38.1
Lalb_Chr09g0321841 Lupinus albus HOM05D002848 ORTHO05D003043 9.0e-06 57.0 97 38.1
Mapoly0111s0041 Marchantia polymorpha HOM05D002848 ORTHO05D003043 9.0e-06 57.0 85 38.8


User provided reference genes

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