Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g01000 Schrenkiella parvula HOM05D005178 ORTHO05D006123 4.6e-133 478.0 260 100.0
Thhalv10028895m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 5.4e-110 401.4 260 85.0
BraA02t07418Z Brassica rapa HOM05D005178 ORTHO05D006123 2.1e-109 399.4 254 87.0
C02p38280 Brassica napus HOM05D005178 ORTHO05D006123 1.7e-108 396.4 254 87.0
AL6G52250 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 4.3e-107 391.7 260 83.1
BolC2t09843H Brassica oleracea HOM05D005178 ORTHO05D006123 1.6e-106 389.8 254 85.8
BcaC03g16062 Brassica carinata HOM05D005178 ORTHO05D006123 8.1e-106 387.5 254 85.0
CARHR249180 Cardamine hirsuta HOM05D005178 ORTHO05D006123 5.4e-102 374.8 260 78.8
AT4G01110 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 7.1e-102 374.4 262 79.8
BcaB01g02336 Brassica carinata HOM05D005178 ORTHO05D006123 6.6e-100 367.9 260 78.1
BolC3t16162H Brassica oleracea HOM05D005178 ORTHO05D006123 8.1e-98 360.9 254 79.9
BcaC01g06846 Brassica carinata HOM05D005178 ORTHO05D006123 1.4e-97 360.1 260 78.8
Carub.0006s3617 Capsella rubella HOM05D005178 ORTHO05D006123 2.4e-97 359.4 264 77.7
C03p38880 Brassica napus HOM05D005178 ORTHO05D006123 5.8e-96 354.8 254 76.8
A03p31890 Brassica napus HOM05D005178 ORTHO05D006123 9.9e-96 354.0 254 78.7
BraA03t12361Z Brassica rapa HOM05D005178 ORTHO05D006123 1.3e-82 310.5 254 73.2
A02p24280 Brassica napus HOM05D005178 ORTHO05D006123 1.8e-81 306.6 253 66.8
BcaB03g13583 Brassica carinata HOM05D005178 ORTHO05D006123 6.9e-81 304.7 260 66.9
C05p00550 Brassica napus HOM05D005178 ORTHO05D006123 1.5e-80 303.5 260 66.9
BraA10t42331Z Brassica rapa HOM05D005178 ORTHO05D006123 3.4e-80 302.4 257 67.3
Aa31LG5G850 Aethionema arabicum HOM05D005178 ORTHO05D006123 1.0e-79 300.8 260 61.2
A10p00520 Brassica napus HOM05D005178 ORTHO05D006123 1.3e-79 300.4 257 66.9
BolC5t28844H Brassica oleracea HOM05D005178 ORTHO05D006123 1.1e-78 297.4 254 66.5
Carub.0001s0080 Capsella rubella HOM05D005178 ORTHO05D006123 2.5e-78 296.2 261 66.3
CARHR000970 Cardamine hirsuta HOM05D005178 ORTHO05D006123 1.8e-76 290.0 260 59.2
THA.LOC104825868 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 1.1e-75 287.3 261 64.8
AL1G10980 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 3.3e-75 285.8 260 60.0
AT1G01453 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 1.2e-72 277.3 260 63.1
Thhalv10009686m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 1.2e-72 277.3 254 63.4
Sp1g00860 Schrenkiella parvula HOM05D005178 ORTHO05D006123 2.2e-71 273.1 253 62.8
Aa31LG1G10830 Aethionema arabicum HOM05D005178 ORTHO05D006123 6.1e-61 238.4 248 56.5
AL4G45600 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 5.0e-39 165.6 260 41.9
C03p30470 Brassica napus HOM05D005178 ORTHO05D006123 5.0e-39 165.6 249 45.8
BolC3t15395H Brassica oleracea HOM05D005178 ORTHO05D006123 5.0e-39 165.6 249 45.8
Gohir.A11G094200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 6.5e-39 165.2 253 46.2
Gohir.D11G099200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 8.5e-39 164.9 253 46.2
BcaC01g05079 Brassica carinata HOM05D005178 ORTHO05D006123 5.5e-38 162.2 255 46.3
BcaC02g12521 Brassica carinata HOM05D005178 ORTHO05D006123 7.2e-38 161.8 265 43.8
Gorai.007G105400 Gossypium raimondii HOM05D005178 ORTHO05D006123 9.4e-38 161.4 253 45.8
A05p01500 Brassica napus HOM05D005178 ORTHO05D006123 2.7e-37 159.8 262 43.9
BraA05t19146Z Brassica rapa HOM05D005178 ORTHO05D006123 2.7e-37 159.8 262 43.9
C04p01700 Brassica napus HOM05D005178 ORTHO05D006123 4.7e-37 159.1 262 43.9
BolC4t21822H Brassica oleracea HOM05D005178 ORTHO05D006123 4.7e-37 159.1 262 43.9
Gohir.D12G113800 Gossypium hirsutum HOM05D005178 ORTHO05D006123 4.7e-37 159.1 251 38.6
AT2G46300 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 2.3e-36 156.8 255 40.4
Gorai.008G123300 Gossypium raimondii HOM05D005178 ORTHO05D006123 2.3e-36 156.8 251 39.0
Thecc.01G348100 Theobroma cacao HOM05D005178 ORTHO05D006123 3.0e-36 156.4 255 47.1
Duzib133G0451 Durio zibethinus HOM05D005178 ORTHO05D006123 9.8e-35 151.4 254 44.9
BcaB01g03231 Brassica carinata HOM05D005178 ORTHO05D006123 2.2e-34 150.2 252 44.4
BcaC01g05085 Brassica carinata HOM05D005178 ORTHO05D006123 2.2e-34 150.2 252 44.4
Duzib138G0021 Durio zibethinus HOM05D005178 ORTHO05D006123 6.3e-34 148.7 253 44.3
Aa31LG1G27670 Aethionema arabicum HOM05D005178 ORTHO05D006123 2.4e-33 146.7 245 37.6
THA.LOC104802056 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 2.4e-33 146.7 248 45.6
Thhalv10001596m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 5.4e-33 145.6 256 37.9
Nn7g37376 Nelumbo nucifera HOM05D005178 ORTHO05D006123 5.4e-33 145.6 254 37.0
A03p25540 Brassica napus HOM05D005178 ORTHO05D006123 2.7e-32 143.3 248 44.0
BraA03t11771Z Brassica rapa HOM05D005178 ORTHO05D006123 2.7e-32 143.3 248 44.0
Sp4g28340 Schrenkiella parvula HOM05D005178 ORTHO05D006123 7.7e-32 141.7 175 45.1
Carub.0004s2900 Capsella rubella HOM05D005178 ORTHO05D006123 3.8e-31 139.4 259 37.1
Sabra02G0144400 Salix brachista HOM05D005178 ORTHO05D006123 8.6e-31 138.3 252 37.3
Potri.002G167300 Populus trichocarpa HOM05D005178 ORTHO05D006123 1.1e-30 137.9 249 38.6
Potri.014G094400 Populus trichocarpa HOM05D005178 ORTHO05D006123 1.9e-30 137.1 254 39.4
Manes.05G026400 Manihot esculenta HOM05D005178 ORTHO05D006123 2.5e-30 136.7 255 34.9
Gohir.A08G126100 Gossypium hirsutum HOM05D005178 ORTHO05D006123 9.5e-30 134.8 248 37.9
QL04p059571 Quercus lobata HOM05D005178 ORTHO05D006123 9.5e-30 134.8 263 44.5
CARHR141580 Cardamine hirsuta HOM05D005178 ORTHO05D006123 1.2e-29 134.4 254 36.2
CANSAT56G4005 Cannabis sativa HOM05D005178 ORTHO05D006123 2.8e-29 133.3 252 41.3
RcHm_v2.0_Chr1g0358651 Rosa chinensis HOM05D005178 ORTHO05D006123 8.0e-29 131.7 258 41.5
Ciclev10021837m.g Citrus clementina HOM05D005178 ORTHO05D006123 1.0e-28 131.3 252 44.0
Haze_15614 Corylus avellana HOM05D005178 ORTHO05D006123 1.0e-28 131.3 248 44.0
Sc01g0002990 Simmondsia chinensis HOM05D005178 ORTHO05D006123 2.3e-28 130.2 254 40.9
THA.LOC104817334 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 4.0e-28 129.4 255 40.4
Gohir.D08G147400 Gossypium hirsutum HOM05D005178 ORTHO05D006123 6.8e-28 128.6 248 33.9
PGR042G2135 Punica granatum HOM05D005178 ORTHO05D006123 6.8e-28 128.6 259 39.4
MD07G1144100 Malus domestica HOM05D005178 ORTHO05D006123 1.2e-27 127.9 260 38.1
CsaV3_3G008390 Cucumis sativus L. HOM05D000050 ORTHO05D000380 2.6e-27 126.7 261 39.5
FAN10G2759 Fragaria x ananassa HOM05D005178 ORTHO05D006123 2.6e-27 126.7 262 37.4
Gorai.004G153000 Gossypium raimondii HOM05D005178 ORTHO05D006123 3.4e-27 126.3 248 33.5
FvH4_7g15840 Fragaria vesca HOM05D005178 ORTHO05D006123 5.7e-27 125.6 262 36.6
FAN06G0749 Fragaria x ananassa HOM05D005178 ORTHO05D006123 7.5e-27 125.2 262 36.6
Atru.chr5.616 Acer truncatum HOM05D005178 ORTHO05D006123 2.8e-26 123.2 253 42.3
Nn1g01788 Nelumbo nucifera HOM05D005178 ORTHO05D006123 6.3e-26 122.1 251 32.3
MELO3C006056.2 Cucumis melo HOM05D005178 ORTHO05D006123 1.1e-25 121.3 256 39.8
FAN03G0560 Fragaria x ananassa HOM05D005178 ORTHO05D006123 2.4e-25 120.2 259 37.8
CiPaw.01G071600 Carya illinoinensis HOM05D005178 ORTHO05D006123 4.1e-25 119.4 257 38.9
FAN06G4203 Fragaria x ananassa HOM05D005178 ORTHO05D006123 3.5e-24 116.3 257 36.2
TWI14G0215 Tripterygium wilfordii HOM05D005178 ORTHO05D006123 5.9e-24 115.5 147 46.3
FAN10G1950 Fragaria x ananassa HOM05D005178 ORTHO05D006123 1.0e-23 114.8 257 36.6
Sed0008780 Sechium edule HOM05D005178 ORTHO05D006123 2.3e-23 113.6 250 37.6
ClCG08G003840 Citrullus lanatus HOM05D005178 ORTHO05D006123 8.6e-23 111.7 260 37.7
MD01G1075000 Malus domestica HOM05D005178 ORTHO05D006123 2.5e-22 110.2 254 37.8
Prupe.2G183000 Prunus persica HOM05D005178 ORTHO05D006123 9.5e-22 108.2 262 37.4
Dinv32550 Davidia involucrata HOM05D005178 ORTHO05D006123 4.7e-21 105.9 254 37.0
Rhsim07G0007300 Rhododendron simsii HOM05D005178 ORTHO05D006123 6.1e-21 105.5 252 38.1
VMungo0540G0638 Vigna mungo HOM05D005178 ORTHO05D006123 6.1e-21 105.5 215 38.6
Lj1g0025938 Lotus japonicus HOM05D005178 ORTHO05D006123 1.0e-20 104.8 257 32.7
Phvul.006G110000 Phaseolus vulgaris HOM05D005178 ORTHO05D006123 5.2e-20 102.4 258 34.1
CiPaw.02G038200 Carya illinoinensis HOM05D005178 ORTHO05D006123 8.9e-20 101.7 252 35.7
Sed0019896 Sechium edule HOM05D005178 ORTHO05D006123 2.6e-19 100.1 256 37.5
CSS0038689 Camellia sinensis var. sinensis HOM05D005178 ORTHO05D006123 1.3e-18 97.8 251 38.2
Sed0006216 Sechium edule HOM05D005178 ORTHO05D006123 1.3e-18 97.8 243 29.6
Hma1.2p1_0384F.1_g141000 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 1.7e-18 97.4 246 36.6
Gohir.A12G110633 Gossypium hirsutum HOM05D005178 ORTHO05D006123 2.2e-18 97.1 150 37.3
Hma1.2p1_2972F.1_g331100 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 2.2e-18 97.1 246 32.9
SalBow5G4166 Salvia bowleyana HOM05D005178 ORTHO05D006123 2.9e-18 96.7 174 36.2
Sopen10g005540 Solanum pennellii HOM05D005178 ORTHO05D006123 6.4e-18 95.5 252 35.3
CAN.G1651.2 Capsicum annuum HOM05D005178 ORTHO05D006123 1.4e-17 94.4 250 36.0
PSO135G0875 Papaver somniferum HOM05D005178 ORTHO05D006123 1.4e-17 94.4 250 32.8
Aqoxy7G00174 Aquilegia oxysepala HOM05D005178 ORTHO05D006123 2.4e-17 93.6 259 33.2
Ca_09491_v3 Cicer arietinum L. HOM05D005178 ORTHO05D006123 2.4e-17 93.6 246 37.0
Sabra14G0069000 Salix brachista HOM05D005178 ORTHO05D006123 4.1e-17 92.8 145 36.6
PSO384G3117 Papaver somniferum HOM05D005178 ORTHO05D006123 5.4e-17 92.4 250 32.8
Dinv43890 Davidia involucrata HOM05D005178 ORTHO05D006123 7.0e-17 92.0 252 36.1
SHI13195 Sapria himalayana HOM05D005178 ORTHO05D006123 2.0e-16 90.5 171 33.3
Nitab4.5_0002262g0140 Nicotiana tabacum HOM05D005178 ORTHO05D006123 2.7e-16 90.1 254 35.4
Solyc10g011750.3 Solanum lycopersicum HOM05D005178 ORTHO05D006123 2.7e-16 90.1 248 35.1
PGSC0003DMG400019400 Solanum tuberosum HOM05D005178 ORTHO05D006123 4.6e-16 89.4 252 35.3
Nitab4.5_0005619g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 1.3e-15 87.8 251 28.3
Actinidia10100 Actinidia chinensis HOM05D005178 ORTHO05D006123 1.7e-15 87.4 253 33.6
Peaxi162Scf00099g00191 Petunia axillaris HOM05D005178 ORTHO05D006123 1.1e-14 84.7 250 34.0
CsaV3_6G003970 Cucumis sativus L. HOM05D005178 ORTHO05D006123 2.5e-14 83.6 261 34.1
Lj7A504T56 Lonicera japonica HOM05D005178 ORTHO05D006123 2.5e-14 83.6 251 32.7
MELO3C029922.2 Cucumis melo HOM05D005178 ORTHO05D006123 4.3e-14 82.8 254 33.1
Medtr7g116930 Medicago truncatula HOM05D005178 ORTHO05D006123 5.6e-14 82.4 246 31.7
MBI06_g02230_MAGBIO Magnolia biondii HOM05D005178 ORTHO05D006123 7.3e-14 82.0 251 35.9
Sc23g0005630 Simmondsia chinensis HOM05D002137 ORTHO05D002144 7.3e-14 82.0 213 32.4
Nitab4.5_0003779g0030 Nicotiana tabacum HOM05D005178 ORTHO05D006123 2.1e-13 80.5 252 32.1
vmacro13200 Vaccinium macrocarpon HOM05D005178 ORTHO05D006123 1.1e-12 78.2 209 37.8
BcaC01g05083 Brassica carinata HOM05D005178 ORTHO05D006123 2.3e-12 77.0 100 44.0
Thhalv10008522m.g Eutrema salsugineum HOM05D002137 ORTHO05D002144 5.2e-12 75.9 179 26.8
CAN.G449.55 Capsicum annuum HOM05D002137 ORTHO05D002144 1.2e-11 74.7 260 25.0
Lalb_Chr04g0261721 Lupinus albus HOM05D005178 ORTHO05D006123 2.6e-11 73.6 177 28.2
TAR375G0073 Trochodendron aralioides HOM05D005178 ORTHO05D006123 2.6e-11 73.6 105 41.0
Nitab4.5_0000522g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 5.8e-11 72.4 225 27.6
THA.LOC104812217 Tarenaya hassleriana HOM05D002137 ORTHO05D002144 5.8e-11 72.4 218 32.6
Oeu008679.1 Olea europaea HOM05D005178 ORTHO05D006123 1.3e-10 71.2 171 28.7
CARHR018230 Cardamine hirsuta HOM05D002137 ORTHO05D002144 2.9e-10 70.1 179 27.9
Eucgr.J02856 Eucalyptus grandis HOM05D002137 ORTHO05D002144 2.9e-10 70.1 155 31.6
TPR.G4707 Trifolium pratense HOM05D005178 ORTHO05D006123 3.7e-10 69.7 246 32.1
BcaC01g05087 Brassica carinata HOM05D001597 ORTHO05D001512 1.4e-09 67.8 171 32.2
Carub.0001s1736 Capsella rubella HOM05D002137 ORTHO05D002144 1.9e-09 67.4 159 26.4
GSVIVG01016858001 Vitis vinifera HOM05D002137 ORTHO05D002144 1.9e-09 67.4 193 28.0
Nitab4.5_0001295g0090 Nicotiana tabacum HOM05D002137 ORTHO05D002144 5.4e-09 65.9 156 28.2
THA.LOC104813947 Tarenaya hassleriana HOM05D002137 ORTHO05D002144 7.0e-09 65.5 162 25.9
SGA_v2.0_scaffold20G09222 Striga asiatica HOM05D002137 ORTHO05D002144 2.1e-08 63.9 251 29.1
C08p18110 Brassica napus HOM05D002137 ORTHO05D002144 6.0e-08 62.4 243 30.9
BcaC07g38874 Brassica carinata HOM05D002137 ORTHO05D002144 7.8e-08 62.0 230 31.7
BolC8t49445H Brassica oleracea HOM05D002137 ORTHO05D002144 1.0e-07 61.6 230 31.7
BraA08t35012Z Brassica rapa HOM05D002137 ORTHO05D002144 1.0e-07 61.6 156 26.9
Gohir.A05G135400 Gossypium hirsutum HOM05D002137 ORTHO05D002144 1.0e-07 61.6 185 27.0
Gohir.D05G137400 Gossypium hirsutum HOM05D002137 ORTHO05D002144 1.0e-07 61.6 185 28.6
A08p30810 Brassica napus HOM05D002137 ORTHO05D002144 1.3e-07 61.2 156 27.6
Haze_15956 Corylus avellana HOM05D002137 ORTHO05D002144 3.0e-07 60.1 185 27.6
Gorai.009G141800 Gossypium raimondii HOM05D002137 ORTHO05D002144 3.9e-07 59.7 185 28.1
BcaB03g12990 Brassica carinata HOM05D002137 ORTHO05D002144 5.0e-07 59.3 171 26.9
VMungo0540G2173 Vigna mungo HOM05D008517 ORTHO05D010482 1.5e-06 57.8 161 27.3
Cpa.g.sc2.275 Carica papaya HOM05D008517 ORTHO05D010482 1.9e-06 57.4 165 29.7
MELO3C013058.2 Cucumis melo HOM05D002137 ORTHO05D002144 1.9e-06 57.4 185 27.6
CsaV3_3G043870 Cucumis sativus L. HOM05D002137 ORTHO05D002144 1.9e-06 57.4 185 27.0
Duzib192G0186 Durio zibethinus HOM05D002137 ORTHO05D002144 2.5e-06 57.0 246 23.2
Os01g0195400 Oryza sativa ssp. japonica HOM05D002137 ORTHO05D002144 2.5e-06 57.0 154 30.5


User provided reference genes

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