Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 3.6e-180 634.8 318 100.0
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 9.1e-160 567.0 316 88.0
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 3.2e-157 558.5 316 87.3
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 7.5e-154 547.4 316 86.4
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 2.2e-153 545.8 313 86.9
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 4.8e-153 544.7 317 87.4
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 1.1e-152 543.5 317 87.1
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 7.0e-152 540.8 317 86.8
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 1.2e-151 540.0 317 86.1
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 2.0e-151 539.3 316 85.8
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 5.5e-149 531.2 329 83.0
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 1.2e-146 523.5 318 84.3
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 5.4e-144 514.6 316 81.0
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 1.9e-128 463.0 316 73.7
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 3.2e-128 462.2 317 74.4
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 9.2e-128 460.7 317 72.2
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 2.0e-127 459.5 318 73.6
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 1.7e-126 456.4 317 71.3
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 1.1e-125 453.8 311 74.0
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 3.3e-125 452.2 321 70.7
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 9.5e-125 450.7 321 70.4
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 4.7e-124 448.4 318 70.1
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 6.2e-124 448.0 318 69.5
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 6.2e-124 448.0 318 69.2
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 8.1e-124 447.6 318 68.9
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.1e-123 447.2 318 69.2
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 3.1e-123 445.7 316 71.8
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 6.8e-123 444.5 315 69.2
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 8.9e-123 444.1 318 68.9
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 8.9e-123 444.1 316 71.5
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.5e-122 443.4 318 69.2
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 2.0e-122 443.0 324 67.9
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 2.6e-122 442.6 311 72.0
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 3.4e-122 442.2 316 72.5
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 5.8e-122 441.4 324 67.6
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 7.5e-122 441.0 319 69.9
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 1.3e-121 440.3 317 70.7
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 2.2e-121 439.5 315 69.8
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 3.7e-121 438.7 315 68.3
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 6.4e-121 438.0 319 68.0
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 6.4e-121 438.0 319 69.0
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 6.4e-121 438.0 316 70.3
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 6.4e-121 438.0 313 70.6
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 8.3e-121 437.6 318 67.9
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 1.1e-120 437.2 315 69.8
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 1.9e-120 436.4 316 69.0
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 5.4e-120 434.9 311 69.5
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 5.4e-120 434.9 318 67.3
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 1.2e-119 433.7 318 67.3
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 1.2e-119 433.7 326 67.5
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 2.1e-119 433.0 320 68.1
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 2.7e-119 432.6 315 67.9
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 2.7e-119 432.6 314 68.2
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 6.0e-119 431.4 315 68.3
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 6.0e-119 431.4 319 68.3
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 1.3e-118 430.3 318 67.6
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 2.3e-118 429.5 316 67.7
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 5.1e-118 428.3 315 67.6
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 6.6e-118 427.9 314 68.2
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 6.6e-118 427.9 317 67.8
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 1.5e-117 426.8 239 88.7
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 1.9e-117 426.4 317 65.3
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 1.9e-117 426.4 312 67.0
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 2.5e-117 426.0 315 68.3
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 3.3e-117 425.6 322 65.8
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 4.3e-117 425.2 316 69.6
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 7.3e-117 424.5 318 67.0
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 7.3e-117 424.5 314 66.9
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 1.4e-115 420.2 319 68.0
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 1.8e-115 419.9 311 66.9
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 1.8e-115 419.9 315 65.4
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 2.4e-115 419.5 350 62.9
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 3.1e-115 419.1 314 67.2
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 8.9e-115 417.5 317 65.3
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 8.9e-115 417.5 315 64.1
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 8.9e-115 417.5 316 65.5
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 1.5e-114 416.8 315 66.7
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 2.6e-114 416.0 305 67.5
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 3.4e-114 415.6 341 62.2
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 2.2e-113 412.9 370 58.1
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 2.9e-113 412.5 316 66.5
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 2.9e-113 412.5 321 64.2
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 3.8e-113 412.1 315 64.1
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 1.9e-112 409.8 315 64.8
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 3.2e-112 409.1 310 65.5
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 1.6e-111 406.8 316 65.2
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 3.5e-111 405.6 314 64.6
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 8.7e-110 401.0 315 63.2
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 8.7e-110 401.0 315 64.8
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 4.3e-109 398.7 280 70.7
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 5.2e-107 391.7 315 61.3
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 6.9e-107 391.3 335 61.5
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 1.9e-104 383.3 317 60.6
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 4.2e-104 382.1 283 67.8
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 7.1e-104 381.3 312 61.2
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 6.0e-103 378.3 262 72.1
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 5.6e-101 371.7 298 63.4
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 2.4e-99 366.3 280 66.1
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 2.0e-98 363.2 276 67.0
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 1.6e-95 353.6 245 72.7
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 4.3e-93 345.5 240 71.7
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 9.0e-91 337.8 315 55.2
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 1.5e-90 337.0 240 70.8
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 2.2e-89 333.2 316 53.2
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 7.4e-85 318.2 233 66.5
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 1.0e-81 307.8 242 65.3
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 1.7e-81 307.0 313 52.7
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 4.2e-80 302.4 241 62.7
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 2.1e-79 300.1 203 73.4
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 2.2e-76 290.0 237 60.8
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 1.2e-74 284.3 245 63.3
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 7.2e-72 275.0 242 60.3
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 5.3e-67 258.8 304 45.1
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 3.4e-66 256.1 188 64.9
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 2.0e-58 230.3 191 60.2
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 3.3e-53 213.0 181 60.2
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 4.7e-47 192.6 322 40.1
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 3.0e-46 189.9 317 37.2
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 7.0e-43 178.7 133 65.4
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 1.2e-39 167.9 319 38.2
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 4.0e-38 162.9 117 70.1
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 3.1e-35 153.3 124 61.3
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 5.9e-34 149.1 111 70.3
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 1.8e-30 137.5 126 55.6
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 2.3e-30 137.1 106 66.0
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 4.0e-30 136.3 113 59.3
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 4.0e-30 136.3 113 59.3
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 4.0e-30 136.3 113 59.3
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 7.8e-26 122.1 77 81.8
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 1.3e-25 121.3 90 65.6
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 3.9e-25 119.8 82 76.8
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 8.6e-25 118.6 98 56.1
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 2.5e-16 90.5 75 57.3
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 3.6e-15 86.7 85 52.9
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 1.2e-13 81.6 54 70.4
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 7.0e-11 72.4 60 58.3
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 7.0e-11 72.4 60 58.3
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 4.6e-10 69.7 58 56.9
arahy.Tifrunner.gnm1.ann1.G2MMRU Arachis hypogaea HOM05D005332 ORTHO05D006861 8.9e-06 55.5 38 76.3


User provided reference genes

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