Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 1.1e-148 530.0 273 100.0
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 3.1e-116 422.2 253 87.4
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 1.3e-114 416.8 251 87.3
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 1.2e-112 410.2 251 86.1
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 3.9e-111 405.2 276 79.7
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 4.4e-110 401.7 274 79.6
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 4.1e-100 368.6 258 79.8
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 1.0e-95 354.0 254 78.0
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 1.7e-93 346.7 253 78.3
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 4.8e-93 345.1 257 75.1
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 2.4e-92 342.8 257 75.9
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 2.2e-90 336.3 248 78.2
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 1.1e-89 334.0 254 72.8
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 1.9e-89 333.2 251 74.9
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 3.6e-88 328.9 253 75.5
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 3.8e-82 308.9 237 75.5
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 9.2e-76 287.7 262 62.6
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 4.5e-75 285.4 245 67.8
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 1.7e-74 283.5 255 60.8
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 6.6e-74 281.6 253 60.9
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 9.5e-73 277.7 182 74.2
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 1.6e-72 276.9 185 73.0
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 2.1e-72 276.6 271 57.9
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 4.7e-72 275.4 185 74.1
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 6.1e-72 275.0 185 71.9
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 1.4e-71 273.9 189 72.0
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 1.4e-71 273.9 256 57.8
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 1.4e-71 273.9 176 76.7
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 1.8e-71 273.5 186 73.7
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 3.1e-71 272.7 185 71.9
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 4.0e-71 272.3 168 79.2
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 5.2e-71 271.9 186 72.6
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 2.0e-70 270.0 271 55.7
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 2.6e-70 269.6 232 59.9
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 3.4e-70 269.2 232 59.5
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 3.4e-70 269.2 232 59.5
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 5.8e-70 268.5 209 65.6
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 7.5e-70 268.1 249 58.2
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 9.8e-70 267.7 178 74.2
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 9.8e-70 267.7 233 59.7
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 1.7e-69 266.9 209 65.1
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 1.7e-69 266.9 177 74.6
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 2.2e-69 266.5 229 62.4
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 2.9e-69 266.2 212 74.1
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 3.7e-69 265.8 185 71.9
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 4.9e-69 265.4 235 58.3
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 4.9e-69 265.4 186 71.0
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 1.1e-68 264.2 163 78.5
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 1.4e-68 263.8 186 69.9
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 1.9e-68 263.5 227 61.2
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 1.9e-68 263.5 178 71.9
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 9.2e-68 261.2 227 59.5
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 1.2e-67 260.8 187 69.0
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 2.0e-67 260.0 250 64.0
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 2.0e-67 260.0 192 67.7
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 2.7e-67 259.6 167 76.0
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 4.6e-67 258.8 187 70.1
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 1.3e-66 257.3 283 51.2
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 2.3e-66 256.5 252 56.0
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 3.0e-66 256.1 164 75.6
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 3.0e-66 256.1 196 66.3
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 3.9e-66 255.8 260 55.4
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 6.6e-66 255.0 228 59.2
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 8.6e-66 254.6 176 71.6
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.5e-65 253.8 261 55.6
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 3.3e-65 252.7 178 68.5
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 3.3e-65 252.7 178 68.5
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 4.3e-65 252.3 178 68.5
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 4.3e-65 252.3 178 68.5
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 5.6e-65 251.9 168 76.2
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 5.6e-65 251.9 166 73.5
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 9.5e-65 251.1 247 59.9
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 1.2e-64 250.8 266 55.3
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 1.6e-64 250.4 178 70.2
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 1.6e-64 250.4 165 76.4
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 2.8e-64 249.6 235 58.3
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 2.8e-64 249.6 271 51.3
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 3.6e-64 249.2 171 69.6
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 3.6e-64 249.2 250 54.8
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 8.0e-64 248.1 178 69.1
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 1.4e-63 247.3 180 68.3
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 2.3e-63 246.5 250 62.4
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 2.3e-63 246.5 172 74.4
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 3.1e-63 246.1 164 73.2
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 4.0e-63 245.7 178 68.0
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 5.2e-63 245.4 184 66.8
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 1.5e-62 243.8 172 73.8
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 1.5e-62 243.8 166 74.7
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 3.4e-62 242.7 184 69.6
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 2.2e-61 240.0 165 73.9
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 2.9e-61 239.6 177 66.7
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 4.9e-61 238.8 173 70.5
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 6.4e-61 238.4 165 73.9
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 6.4e-61 238.4 163 72.4
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 1.1e-60 237.7 268 51.1
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 1.4e-60 237.3 150 76.0
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 1.9e-60 236.9 166 71.1
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 5.4e-60 235.3 164 69.5
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 1.6e-59 233.8 164 70.1
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 2.1e-59 233.4 166 68.1
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 3.5e-59 232.6 179 67.0
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 3.5e-59 232.6 172 72.1
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 4.6e-59 232.3 162 72.2
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 6.0e-59 231.9 176 67.0
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 3.0e-58 229.6 166 69.3
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.1e-58 228.8 221 56.1
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.1e-58 228.8 221 56.1
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 6.6e-58 228.4 219 56.6
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 1.1e-57 227.6 251 52.6
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.1e-57 227.6 179 64.8
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 1.9e-57 226.9 200 59.5
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 4.4e-54 215.7 149 67.8
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.3e-53 214.2 203 57.1
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 8.3e-53 211.5 133 79.7
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 1.9e-52 210.3 163 63.8
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 7.1e-52 208.4 230 53.5
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 1.6e-51 207.2 185 60.5
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 1.6e-51 207.2 137 72.3
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 6.0e-51 205.3 164 65.9
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 5.1e-50 202.2 166 62.0
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 9.6e-49 198.0 139 69.8
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 1.5e-46 190.7 145 62.1
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 7.1e-44 181.8 112 72.3
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 1.7e-34 150.6 94 75.5
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 3.9e-34 149.4 85 78.8
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.9e-28 130.6 176 44.3
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 6.0e-27 125.6 179 45.3
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 7.9e-27 125.2 110 59.1
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 7.9e-27 125.2 69 82.6
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 1.9e-25 120.6 130 44.6
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 2.8e-24 116.7 93 62.4
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 2.8e-24 116.7 93 62.4
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 2.8e-24 116.7 127 45.7
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 6.2e-24 115.5 69 72.5
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 2.6e-22 110.2 145 37.9
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 2.9e-21 106.7 81 66.7
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 1.3e-18 97.8 77 64.9
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 2.2e-13 80.5 84 53.6
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 9.3e-12 75.1 193 36.3
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 3.0e-10 70.1 43 74.4
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 6.3e-08 62.4 38 76.3
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 6.3e-08 62.4 56 64.3


User provided reference genes

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