Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g36010 Schrenkiella parvula HOM05D006831 ORTHO05D008256 3.5e-172 608.2 315 100.0
Thhalv10018887m.g Eutrema salsugineum HOM05D006831 ORTHO05D008256 9.8e-122 440.7 327 72.5
A07p26290 Brassica napus HOM05D006831 ORTHO05D008256 1.8e-120 436.4 325 75.7
BraA07t30273Z Brassica rapa HOM05D006831 ORTHO05D008256 1.8e-120 436.4 325 75.7
BolC6t38038H Brassica oleracea HOM05D006831 ORTHO05D008256 7.7e-119 431.0 279 81.7
C06p28690 Brassica napus HOM05D006831 ORTHO05D008256 5.0e-118 428.3 323 74.3
AT1G79760 Arabidopsis thaliana HOM05D006831 ORTHO05D008256 1.9e-117 426.4 317 73.2
BcaC08g45266 Brassica carinata HOM05D006831 ORTHO05D008256 2.6e-114 416.0 315 73.3
Carub.0002s2775 Capsella rubella HOM05D006831 ORTHO05D008256 2.6e-114 416.0 318 70.4
AL2G41800 Arabidopsis lyrata HOM05D006831 ORTHO05D008256 1.0e-110 404.1 320 70.0
CARHR262750 Cardamine hirsuta HOM05D006831 ORTHO05D008256 1.1e-104 384.0 316 67.4
Aa31LG4G70 Aethionema arabicum HOM05D006831 ORTHO05D008256 7.8e-79 298.1 332 53.6
Gohir.A10G066100 Gossypium hirsutum HOM05D006831 ORTHO05D008256 6.0e-55 218.8 363 39.7
Gorai.011G071900 Gossypium raimondii HOM05D006831 ORTHO05D008256 6.0e-55 218.8 363 39.7
Thecc.06G098700 Theobroma cacao HOM05D006831 ORTHO05D008256 7.9e-55 218.4 359 39.0
Gohir.D10G067400 Gossypium hirsutum HOM05D006831 ORTHO05D008256 1.3e-54 217.6 367 39.2
Duzib235G1306 Durio zibethinus HOM05D006831 ORTHO05D008256 1.3e-52 211.1 358 39.7
COL.COLO4_30498 Corchorus olitorius HOM05D006831 ORTHO05D008256 2.1e-52 210.3 368 39.1
Gohir.A02G117700 Gossypium hirsutum HOM05D006831 ORTHO05D008256 3.1e-51 206.5 372 38.4
Gohir.D03G058400 Gossypium hirsutum HOM05D006831 ORTHO05D008256 4.0e-51 206.1 359 38.4
Gorai.003G062200 Gossypium raimondii HOM05D006831 ORTHO05D008256 4.0e-51 206.1 359 38.4
vmacro18857 Vaccinium macrocarpon HOM05D006831 ORTHO05D008256 4.0e-51 206.1 350 39.1
Rhsim08G0227100 Rhododendron simsii HOM05D006831 ORTHO05D008256 2.6e-50 203.4 349 39.8
Dinv30442 Davidia involucrata HOM05D006831 ORTHO05D008256 4.5e-50 202.6 358 39.7
Ciclev10025849m.g Citrus clementina HOM05D006831 ORTHO05D008256 1.0e-49 201.4 359 39.3
Atru.chr1.3517 Acer truncatum HOM05D006831 ORTHO05D008256 4.9e-49 199.1 357 38.9
CiPaw.01G232000 Carya illinoinensis HOM05D006831 ORTHO05D008256 1.9e-48 197.2 363 38.0
THA.LOC104801499 Tarenaya hassleriana HOM05D006831 ORTHO05D008256 9.3e-48 194.9 323 40.2
Hma1.2p1_0430F.1_g151466 Hydrangea macrophylla HOM05D006831 ORTHO05D008256 1.6e-47 194.1 359 37.0
Cfa003655 Carpinus fangiana HOM05D006831 ORTHO05D008256 2.1e-47 193.7 353 38.5
RcHm_v2.0_Chr2g0140341 Rosa chinensis HOM05D006831 ORTHO05D008256 2.7e-47 193.4 359 37.9
QL05p020342 Quercus lobata HOM05D006831 ORTHO05D008256 4.6e-47 192.6 361 37.4
Eucgr.F03071 Eucalyptus grandis HOM05D006831 ORTHO05D008256 3.9e-46 189.5 370 38.1
CSS0014632 Camellia sinensis var. sinensis HOM05D006831 ORTHO05D008256 5.1e-46 189.1 355 37.2
Potri.001G189400 Populus trichocarpa HOM05D006831 ORTHO05D008256 5.1e-46 189.1 357 38.4
FAN05G2796 Fragaria x ananassa HOM05D006831 ORTHO05D008256 1.1e-45 188.0 356 38.5
TWI12G0407 Tripterygium wilfordii HOM05D006831 ORTHO05D008256 1.5e-45 187.6 370 34.3
FvH4_6g32300 Fragaria vesca HOM05D006831 ORTHO05D008256 2.5e-45 186.8 356 38.2
Actinidia21708 Actinidia chinensis HOM05D006831 ORTHO05D008256 3.3e-45 186.4 354 37.0
Manes.11G034300 Manihot esculenta HOM05D006831 ORTHO05D008256 1.3e-44 184.5 281 41.6
DCAR_016191 Daucus carota HOM05D006831 ORTHO05D008256 3.7e-44 183.0 338 38.2
FAN14G1280 Fragaria x ananassa HOM05D006831 ORTHO05D008256 3.7e-44 183.0 335 39.1
FAN02G3719 Fragaria x ananassa HOM05D006831 ORTHO05D008256 4.8e-44 182.6 356 37.9
Lalb_Chr04g0262951 Lupinus albus HOM05D006831 ORTHO05D008256 4.8e-44 182.6 356 36.5
Haze_06254 Corylus avellana HOM05D006831 ORTHO05D008256 6.3e-44 182.2 327 36.4
Sabra01G0151300 Salix brachista HOM05D006831 ORTHO05D008256 8.2e-44 181.8 364 36.8
CAN.G1143.6 Capsicum annuum HOM05D006831 ORTHO05D008256 1.1e-43 181.4 364 34.1
Prupe.3G060100 Prunus persica HOM05D006831 ORTHO05D008256 1.4e-43 181.0 355 35.8
Sed0018864 Sechium edule HOM05D006831 ORTHO05D008256 1.4e-43 181.0 285 39.3
ClCG00G002730 Citrullus lanatus HOM05D006831 ORTHO05D008256 2.4e-43 180.3 356 36.8
ClCG07G013280 Citrullus lanatus HOM05D006831 ORTHO05D008256 2.4e-43 180.3 356 36.8
Cc04_g02630 Coffea canephora HOM05D006831 ORTHO05D008256 3.1e-43 179.9 352 36.1
Glyma.07G015900 Glycine max HOM05D006831 ORTHO05D008256 3.1e-43 179.9 351 36.5
Glyma.08G201400 Glycine max HOM05D006831 ORTHO05D008256 3.1e-43 179.9 348 37.1
MSTRG.11030 Avicennia marina HOM05D006831 ORTHO05D008256 5.3e-43 179.1 365 34.0
Lj3g0006655 Lotus japonicus HOM05D006831 ORTHO05D008256 5.3e-43 179.1 363 35.3
Sabra11G0033200 Salix brachista HOM05D006831 ORTHO05D008256 5.3e-43 179.1 354 37.0
TAR626G1633 Trochodendron aralioides HOM05D006831 ORTHO05D008256 5.3e-43 179.1 355 35.5
Peaxi162Scf00038g00918 Petunia axillaris HOM05D006831 ORTHO05D008256 2.0e-42 177.2 364 36.3
arahy.Tifrunner.gnm1.ann1.4LXS91 Arachis hypogaea HOM05D006831 ORTHO05D008256 3.4e-42 176.4 365 35.3
Phvul.010G145700 Phaseolus vulgaris HOM05D006831 ORTHO05D008256 3.4e-42 176.4 352 35.5
Potri.011G047800 Populus trichocarpa HOM05D006831 ORTHO05D008256 4.5e-42 176.0 364 37.1
PGR102G2866 Punica granatum HOM05D006831 ORTHO05D008256 5.9e-42 175.6 365 36.4
arahy.Tifrunner.gnm1.ann1.U3LBHC Arachis hypogaea HOM05D006831 ORTHO05D008256 7.6e-42 175.3 363 35.3
PGSC0003DMG400002528 Solanum tuberosum HOM05D006831 ORTHO05D008256 1.3e-41 174.5 374 34.0
CiPaw.02G146100 Carya illinoinensis HOM05D006831 ORTHO05D008256 2.2e-41 173.7 362 37.0
CARHR262770 Cardamine hirsuta HOM05D006831 ORTHO05D008256 2.9e-41 173.3 117 76.1
Lj5A54G57 Lonicera japonica HOM05D006831 ORTHO05D008256 3.8e-41 172.9 348 35.6
VMungo0331G1511 Vigna mungo HOM05D006831 ORTHO05D008256 6.5e-41 172.2 368 35.1
Cpa.g.sc109.6 Carica papaya HOM05D006831 ORTHO05D008256 1.1e-40 171.4 284 41.9
Sopen03g039800 Solanum pennellii HOM05D006831 ORTHO05D008256 1.1e-40 171.4 365 33.2
MD09G1204500 Malus domestica HOM05D006831 ORTHO05D008256 1.4e-40 171.0 359 36.5
Solyc03g120970.3 Solanum lycopersicum HOM05D006831 ORTHO05D008256 1.4e-40 171.0 365 33.4
Oeu050599.1 Olea europaea HOM05D006831 ORTHO05D008256 4.2e-40 169.5 357 33.6
CsaV3_3G023650 Cucumis sativus L. HOM05D006831 ORTHO05D008256 7.2e-40 168.7 369 35.2
Lsat_1_v5_gn_1_36980 Lactuca sativa HOM05D006831 ORTHO05D008256 1.2e-39 167.9 362 34.5
ECA247G2417 Erigeron canadensis HOM05D006831 ORTHO05D008256 1.6e-39 167.5 327 35.5
TAR383G0884 Trochodendron aralioides HOM05D006831 ORTHO05D008256 1.4e-38 164.5 353 36.3
AUR62031907 Chenopodium quinoa HOM05D006831 ORTHO05D008256 3.0e-38 163.3 356 33.1
Medtr8g014330 Medicago truncatula HOM05D006831 ORTHO05D008256 1.5e-37 161.0 370 33.8
CANSAT56G0873 Cannabis sativa HOM05D006831 ORTHO05D008256 5.7e-37 159.1 366 32.8
MBI04_g30107_MAGBIO Magnolia biondii HOM05D006831 ORTHO05D008256 9.7e-37 158.3 357 34.2
TPR.G29201 Trifolium pratense HOM05D006831 ORTHO05D008256 1.3e-36 157.9 367 33.2
Aqoxy7G01449 Aquilegia oxysepala HOM05D006831 ORTHO05D008256 1.7e-36 157.5 362 34.5
HanXRQChr02g0032201 Helianthus annuus HOM05D006831 ORTHO05D008256 6.3e-36 155.6 369 33.6
EL10Ac9g21213 Beta vulgaris HOM05D006831 ORTHO05D008256 5.3e-35 152.5 358 31.3
Nn6g35309 Nelumbo nucifera HOM05D006831 ORTHO05D008256 5.3e-35 152.5 365 32.9
SalBow2G3477 Salvia bowleyana HOM05D006831 ORTHO05D008256 6.9e-35 152.1 281 35.2
Phvul.005G166600 Phaseolus vulgaris HOM05D006831 ORTHO05D008256 2.0e-34 150.6 343 35.0
HanXRQChr10g0313251 Helianthus annuus HOM05D006831 ORTHO05D008256 2.6e-34 150.2 363 32.8
Ca_23268_v3 Cicer arietinum L. HOM05D006831 ORTHO05D008256 3.4e-34 149.8 308 34.1
Lsat_1_v5_gn_5_134400 Lactuca sativa HOM05D006831 ORTHO05D008256 7.7e-34 148.7 290 36.9
CARHR074700 Cardamine hirsuta HOM05D006831 ORTHO05D008256 1.7e-33 147.5 136 62.5
Psat4g221040 Pisum sativum HOM05D006831 ORTHO05D008256 2.2e-33 147.1 288 35.8
Ah.01g022020 Amaranthus hybridus HOM05D006831 ORTHO05D008256 8.5e-33 145.2 286 34.6
AUR62022199 Chenopodium quinoa HOM05D006831 ORTHO05D008256 1.1e-32 144.8 284 34.2
Nitab4.5_0012387g0010 Nicotiana tabacum HOM05D006831 ORTHO05D008256 7.2e-32 142.1 359 30.9
VMungo1080G0645 Vigna mungo HOM05D006831 ORTHO05D008256 2.1e-31 140.6 341 34.3
SGA_v2.0_scaffold66G22536 Striga asiatica HOM05D001613 ORTHO05D008256 9.7e-29 131.7 312 33.0
PSO210G4514 Papaver somniferum HOM05D006831 ORTHO05D008256 1.4e-24 117.9 393 29.3
PSO210G6112 Papaver somniferum HOM05D006831 ORTHO05D008256 4.2e-24 116.3 393 28.2
Actinidia32697 Actinidia chinensis HOM05D006831 ORTHO05D008256 3.3e-21 106.7 144 43.1
MELO3C012995.2 Cucumis melo HOM05D006831 ORTHO05D008256 4.4e-21 106.3 367 29.7
GSVIVG01017000001 Vitis vinifera HOM05D006831 ORTHO05D008256 1.7e-20 104.4 217 35.0
Os01g0744200 Oryza sativa ssp. japonica HOM05D006831 ORTHO05D008256 4.1e-19 99.8 302 28.1
Nitab4.5_0009505g0020 Nicotiana tabacum HOM05D006831 ORTHO05D008256 1.6e-18 97.8 102 46.1
VMungo0331G1726 Vigna mungo HOM05D006831 ORTHO05D008256 5.9e-18 95.9 260 30.8
Migut.I00901 Erythranthe guttata HOM05D006831 ORTHO05D008256 1.7e-17 94.4 144 38.2
Zm00001eb153550 Zea mays HOM05D006831 ORTHO05D008256 1.9e-16 90.9 361 26.9
HPP92_006371 Vanilla planifolia HOM05D006831 ORTHO05D008256 3.2e-16 90.1 352 25.6
ATR0705G209 Amborella trichopoda HOM05D006831 ORTHO05D008256 8.0e-15 85.5 101 43.6
TAR636G2144 Trochodendron aralioides HOM05D006353 ORTHO05D007993 8.0e-15 85.5 348 26.4
Dinv25324 Davidia involucrata HOM05D006353 ORTHO05D007993 2.8e-12 77.0 347 25.4
Sabra04G0151900 Salix brachista HOM05D006353 ORTHO05D007993 3.7e-12 76.6 341 24.6
AUR62006369 Chenopodium quinoa HOM05D006353 ORTHO05D007993 1.1e-11 75.1 347 26.5
Sc07g0005810 Simmondsia chinensis HOM05D006353 ORTHO05D007993 1.1e-11 75.1 342 26.3
vmacro20360 Vaccinium macrocarpon HOM05D006353 ORTHO05D007993 1.4e-11 74.7 331 27.8
Thecc.04G154100 Theobroma cacao HOM05D006353 ORTHO05D007993 1.8e-11 74.3 344 25.6
Atru.chr8.2382 Acer truncatum HOM05D006353 ORTHO05D007993 3.1e-11 73.6 353 26.6
TPR.G25775 Trifolium pratense HOM05D006831 ORTHO05D008256 5.3e-11 72.8 119 37.0
GSVIVG01030203001 Vitis vinifera HOM05D006353 ORTHO05D007993 9.1e-11 72.0 335 24.5
Prupe.6G291400 Prunus persica HOM05D006353 ORTHO05D007993 1.2e-10 71.6 332 24.7
EL10Ac7g17070 Beta vulgaris HOM05D006353 ORTHO05D007993 3.5e-10 70.1 337 25.5
Hund00686 Selenicereus undatus HOM05D006831 ORTHO05D008256 3.5e-10 70.1 52 59.6
Duzib212G0771 Durio zibethinus HOM05D006353 ORTHO05D007993 1.0e-09 68.6 349 26.6
Gohir.A10G149700 Gossypium hirsutum HOM05D006353 ORTHO05D007993 2.2e-09 67.4 350 24.3
Lj1g0007888 Lotus japonicus HOM05D006353 ORTHO05D007993 2.2e-09 67.4 333 24.9
Sc15g0002090 Simmondsia chinensis HOM05D006831 ORTHO05D008256 2.2e-09 67.4 141 34.0
Potri.016G134500 Populus trichocarpa HOM05D006353 ORTHO05D007993 2.9e-09 67.0 339 22.7
Lalb_Chr19g0124031 Lupinus albus HOM05D006353 ORTHO05D007993 3.8e-09 66.6 332 24.1
Cfa017056 Carpinus fangiana HOM05D006353 ORTHO05D007993 5.0e-09 66.2 343 26.2
Haze_21157 Corylus avellana HOM05D006353 ORTHO05D007993 5.0e-09 66.2 267 25.5
FAN05G5674 Fragaria x ananassa HOM05D006353 ORTHO05D007993 5.0e-09 66.2 304 24.0
Ah.08g209640 Amaranthus hybridus HOM05D006353 ORTHO05D007993 6.5e-09 65.9 266 25.2
arahy.Tifrunner.gnm1.ann1.0YL58U Arachis hypogaea HOM05D006353 ORTHO05D007993 8.5e-09 65.5 329 23.4
FAN05G4939 Fragaria x ananassa HOM05D006353 ORTHO05D007993 8.5e-09 65.5 323 24.5
Gorai.011G129000 Gossypium raimondii HOM05D006353 ORTHO05D007993 8.5e-09 65.5 344 23.8
RcHm_v2.0_Chr3g0460831 Rosa chinensis HOM05D006353 ORTHO05D007993 8.5e-09 65.5 328 24.7
PGSC0003DMG400004416 Solanum tuberosum HOM05D006353 ORTHO05D007993 8.5e-09 65.5 275 23.6
Actinidia11518 Actinidia chinensis HOM05D006353 ORTHO05D007993 1.5e-08 64.7 347 25.6
Gohir.D10G117100 Gossypium hirsutum HOM05D006353 ORTHO05D007993 1.5e-08 64.7 343 23.6
AUR62029702 Chenopodium quinoa HOM05D006353 ORTHO05D007993 1.9e-08 64.3 271 24.7
arahy.Tifrunner.gnm1.ann1.FA4IPG Arachis hypogaea HOM05D006353 ORTHO05D007993 2.5e-08 63.9 329 23.1
Os01g0823400 Oryza sativa ssp. japonica HOM05D006353 ORTHO05D007993 2.5e-08 63.9 358 26.5
BraA03t11371Z Brassica rapa HOM05D006353 ORTHO05D007993 3.2e-08 63.5 343 25.7
Haze_02695 Corylus avellana HOM05D006831 ORTHO05D008256 3.2e-08 63.5 50 56.0
FAN09G0411 Fragaria x ananassa HOM05D006353 ORTHO05D007993 3.2e-08 63.5 318 24.8
THA.LOC104806639 Tarenaya hassleriana HOM05D006353 ORTHO05D007993 3.2e-08 63.5 354 24.9
BcaC01g05532 Brassica carinata HOM05D006353 ORTHO05D007993 4.2e-08 63.2 343 25.4
C03p25230 Brassica napus HOM05D006353 ORTHO05D007993 4.2e-08 63.2 343 25.4
BolC3t14918H Brassica oleracea HOM05D006353 ORTHO05D007993 4.2e-08 63.2 343 25.4
Medtr7g072635 Medicago truncatula HOM05D006353 ORTHO05D007993 4.2e-08 63.2 329 24.3
Medtr7g072870 Medicago truncatula HOM05D006353 ORTHO05D007993 4.2e-08 63.2 329 24.3
PSO339G6092 Papaver somniferum HOM05D006353 ORTHO05D007993 4.2e-08 63.2 362 22.9
QL07p032560 Quercus lobata HOM05D006353 ORTHO05D007993 4.2e-08 63.2 293 25.3
PSO384G1417 Papaver somniferum HOM05D007537 ORTHO05D009602 5.5e-08 62.8 307 27.4
PSO384G2070 Papaver somniferum HOM05D006353 ORTHO05D007993 5.5e-08 62.8 364 22.3
Nn2g10337 Nelumbo nucifera HOM05D006353 ORTHO05D007993 9.4e-08 62.0 338 24.9
Rhsim05G0229500 Rhododendron simsii HOM05D006353 ORTHO05D007993 9.4e-08 62.0 344 26.7
Sopen09g010850 Solanum pennellii HOM05D006353 ORTHO05D007993 1.6e-07 61.2 275 22.9
A03p21360 Brassica napus HOM05D006353 ORTHO05D007993 2.7e-07 60.5 343 25.7
MSTRG.18951 Avicennia marina HOM05D006353 ORTHO05D007993 3.6e-07 60.1 336 24.4
CARHR133200 Cardamine hirsuta HOM05D006353 ORTHO05D007993 3.6e-07 60.1 337 25.2
BcaC02g12001 Brassica carinata HOM05D006353 ORTHO05D007993 4.7e-07 59.7 358 26.0
FvH4_6g10130 Fragaria vesca HOM05D006353 ORTHO05D007993 4.7e-07 59.7 336 24.7
FAN14G4939 Fragaria x ananassa HOM05D006353 ORTHO05D007993 4.7e-07 59.7 336 24.4
BcaB02g09176 Brassica carinata HOM05D006353 ORTHO05D007993 6.1e-07 59.3 358 26.0
Migut.J00057 Erythranthe guttata HOM05D006353 ORTHO05D007993 6.1e-07 59.3 338 25.7
Nn2g10869 Nelumbo nucifera HOM05D007537 ORTHO05D009602 1.0e-06 58.5 301 26.6
A05p07550 Brassica napus HOM05D006353 ORTHO05D007993 1.4e-06 58.2 359 26.2
BraA05t19722Z Brassica rapa HOM05D006353 ORTHO05D007993 1.4e-06 58.2 359 26.2
Sp4g20840 Schrenkiella parvula HOM05D006353 ORTHO05D007993 1.8e-06 57.8 337 25.5
Hund19788 Selenicereus undatus HOM05D006353 ORTHO05D007993 2.3e-06 57.4 281 25.6
C04p09030 Brassica napus HOM05D006353 ORTHO05D007993 3.0e-06 57.0 355 25.6
BolC4t22493H Brassica oleracea HOM05D006353 ORTHO05D007993 3.0e-06 57.0 355 25.6
ECA248G0672 Erigeron canadensis HOM05D006353 ORTHO05D007993 3.0e-06 57.0 287 25.4
CiPaw.09G219300 Carya illinoinensis HOM05D006353 ORTHO05D007993 4.0e-06 56.6 324 22.8
Duzib151G0311 Durio zibethinus HOM05D006353 ORTHO05D007993 8.8e-06 55.5 274 24.8


User provided reference genes

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