Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g35850 Schrenkiella parvula HOM05D006908 ORTHO05D008662 9.2e-178 626.7 303 100.0
Thhalv10018901m.g Eutrema salsugineum HOM05D006908 ORTHO05D008662 1.1e-141 506.9 316 81.3
CARHR074570 Cardamine hirsuta HOM05D006908 ORTHO05D008662 9.7e-135 483.8 312 76.9
BcaC08g47561 Brassica carinata HOM05D006908 ORTHO05D008662 2.0e-127 459.5 305 76.7
Carub.0002s2758 Capsella rubella HOM05D006908 ORTHO05D008662 3.3e-127 458.8 306 74.2
BcaC08g47592 Brassica carinata HOM05D002960 ORTHO05D003632 4.8e-126 454.9 315 75.2
AT1G79915 Arabidopsis thaliana HOM05D006908 ORTHO05D008662 2.4e-125 452.6 305 74.8
BolC6t40444H Brassica oleracea HOM05D002960 ORTHO05D003632 9.4e-122 440.7 341 69.5
C06p54330 Brassica napus HOM05D002960 ORTHO05D003632 1.2e-121 440.3 340 69.7
Aa31LG4G230 Aethionema arabicum HOM05D006908 ORTHO05D008662 2.2e-115 419.5 336 64.0
BraA07t32051Z Brassica rapa HOM05D006908 ORTHO05D008662 2.9e-115 419.1 317 70.0
THA.LOC104812520 Tarenaya hassleriana HOM05D006908 ORTHO05D008662 1.3e-107 393.7 337 59.3
A07p45490 Brassica napus HOM05D006908 ORTHO05D008662 1.6e-100 370.2 367 57.5
QL05p023344 Quercus lobata HOM05D006908 ORTHO05D008662 5.5e-98 361.7 317 57.7
MD17G1194300 Malus domestica HOM05D006908 ORTHO05D008662 7.2e-98 361.3 312 57.7
Gorai.006G098400 Gossypium raimondii HOM05D006908 ORTHO05D008662 4.0e-96 355.5 320 56.9
COL.COLO4_30388 Corchorus olitorius HOM05D006908 ORTHO05D008662 5.2e-96 355.1 330 54.8
FAN09G3067 Fragaria x ananassa HOM05D006908 ORTHO05D008662 5.2e-96 355.1 327 55.7
Dinv38042 Davidia involucrata HOM05D006908 ORTHO05D008662 6.8e-96 354.8 316 56.3
Lj5C59T9 Lonicera japonica HOM05D006908 ORTHO05D008662 6.8e-96 354.8 317 54.9
CiPaw.01G238600 Carya illinoinensis HOM05D006908 ORTHO05D008662 8.8e-96 354.4 316 57.0
Eucgr.J02986 Eucalyptus grandis HOM05D006908 ORTHO05D008662 2.0e-95 353.2 303 58.4
FAN05G1986 Fragaria x ananassa HOM05D006908 ORTHO05D008662 2.0e-95 353.2 330 55.5
Haze_16403 Corylus avellana HOM05D006908 ORTHO05D008662 4.4e-95 352.1 320 55.9
Lalb_Chr22g0351301 Lupinus albus HOM05D006908 ORTHO05D008662 4.4e-95 352.1 322 56.2
ECA247G1365 Erigeron canadensis HOM05D006908 ORTHO05D008662 1.3e-94 350.5 316 57.6
HanXRQChr02g0032801 Helianthus annuus HOM05D006908 ORTHO05D008662 1.7e-94 350.1 319 55.2
FvH4_6g31280 Fragaria vesca HOM05D006908 ORTHO05D008662 3.7e-94 349.0 325 55.7
Hma1.2p1_0323F.1_g125120 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 8.3e-94 347.8 322 54.3
Sabra01G0145800 Salix brachista HOM05D006908 ORTHO05D008662 2.4e-93 346.3 325 55.4
Duzib160G0703 Durio zibethinus HOM05D006908 ORTHO05D008662 3.1e-93 345.9 321 56.4
Atru.chr1.3281 Acer truncatum HOM05D006908 ORTHO05D008662 7.0e-93 344.7 318 55.0
GSVIVG01017098001 Vitis vinifera HOM05D006908 ORTHO05D008662 7.0e-93 344.7 319 55.2
PGR102G2040 Punica granatum HOM05D006908 ORTHO05D008662 1.6e-92 343.6 317 55.2
Thecc.06G089400 Theobroma cacao HOM05D006908 ORTHO05D008662 1.6e-92 343.6 323 54.2
Cc04_g03340 Coffea canephora HOM05D006908 ORTHO05D008662 2.7e-92 342.8 322 55.3
MELO3C012958.2 Cucumis melo HOM05D006908 ORTHO05D008662 2.7e-92 342.8 326 55.2
RcHm_v2.0_Chr2g0138011 Rosa chinensis HOM05D006908 ORTHO05D008662 4.5e-92 342.0 326 56.4
Actinidia01807 Actinidia chinensis HOM05D006908 ORTHO05D008662 1.3e-91 340.5 320 53.8
Glyma.15G014900 Glycine max HOM05D006908 ORTHO05D008662 2.9e-91 339.3 313 54.6
VMungo1080G1808 Vigna mungo HOM05D006908 ORTHO05D008662 2.9e-91 339.3 320 54.7
Phvul.005G170700 Phaseolus vulgaris HOM05D006908 ORTHO05D008662 3.8e-91 339.0 331 53.8
Nn8g39204 Nelumbo nucifera HOM05D006908 ORTHO05D008662 6.6e-91 338.2 322 55.9
Rhsim08G0222000 Rhododendron simsii HOM05D006908 ORTHO05D008662 6.6e-91 338.2 332 53.6
PGSC0003DMG400005687 Solanum tuberosum HOM05D006908 ORTHO05D008662 6.6e-91 338.2 330 52.4
ClCG07G013040 Citrullus lanatus HOM05D006908 ORTHO05D008662 1.1e-90 337.4 330 52.7
MSTRG.11073 Avicennia marina HOM05D006908 ORTHO05D008662 2.5e-90 336.3 316 52.8
CsaV3_3G025130 Cucumis sativus L. HOM05D006908 ORTHO05D008662 3.3e-90 335.9 326 53.4
Ciclev10025928m.g Citrus clementina HOM05D006908 ORTHO05D008662 7.3e-90 334.7 354 50.8
CANSAT56G3342 Cannabis sativa HOM05D006908 ORTHO05D008662 9.5e-90 334.3 311 54.7
Sopen03g039000 Solanum pennellii HOM05D006908 ORTHO05D008662 9.5e-90 334.3 325 52.3
Ah.01g005440 Amaranthus hybridus HOM05D006908 ORTHO05D008662 1.2e-89 334.0 313 55.0
Medtr2g102040 Medicago truncatula HOM05D006908 ORTHO05D008662 2.1e-89 333.2 318 52.2
EL10Ac9g22006 Beta vulgaris HOM05D006908 ORTHO05D008662 6.1e-89 331.6 315 53.3
TAR626G0624 Trochodendron aralioides HOM05D006908 ORTHO05D008662 6.1e-89 331.6 342 53.8
Lj3g0017668 Lotus japonicus HOM05D006908 ORTHO05D008662 8.0e-89 331.3 316 54.1
Manes.11G045900 Manihot esculenta HOM05D006908 ORTHO05D008662 1.0e-88 330.9 305 55.4
Ca_01120_v3 Cicer arietinum L. HOM05D006908 ORTHO05D008662 1.4e-88 330.5 324 51.2
DCAR_023055 Daucus carota HOM05D006908 ORTHO05D008662 2.3e-88 329.7 327 51.7
SalBow2G2262 Salvia bowleyana HOM05D006908 ORTHO05D008662 6.8e-88 328.2 314 52.2
TPR.G37174 Trifolium pratense HOM05D006908 ORTHO05D008662 6.8e-88 328.2 324 51.2
Hund06614 Selenicereus undatus HOM05D006908 ORTHO05D008662 8.9e-88 327.8 307 53.4
Migut.I00872 Erythranthe guttata HOM05D006908 ORTHO05D008662 1.5e-87 327.0 315 52.7
Oeu063957.2 Olea europaea HOM05D006908 ORTHO05D008662 2.6e-87 326.2 309 52.1
PSO782G4818 Papaver somniferum HOM05D006908 ORTHO05D008662 3.4e-87 325.9 323 52.0
arahy.Tifrunner.gnm1.ann1.0IDI1A Arachis hypogaea HOM05D006908 ORTHO05D008662 5.7e-87 325.1 318 55.0
arahy.Tifrunner.gnm1.ann1.UK934I Arachis hypogaea HOM05D006908 ORTHO05D008662 5.7e-87 325.1 318 55.0
vmacro18903 Vaccinium macrocarpon HOM05D006908 ORTHO05D008662 6.4e-86 321.6 370 48.4
Prupe.3G070300 Prunus persica HOM05D006908 ORTHO05D008662 1.1e-85 320.9 326 51.5
Sc10g0007370 Simmondsia chinensis HOM05D006908 ORTHO05D008662 1.8e-85 320.1 332 49.4
Nitab4.5_0002308g0060 Nicotiana tabacum HOM05D006908 ORTHO05D008662 3.2e-85 319.3 322 50.9
Sed0021689 Sechium edule HOM05D006908 ORTHO05D008662 4.1e-85 318.9 331 49.5
CDE02G0011 Ceratophyllum demersum HOM05D006908 ORTHO05D008662 9.2e-85 317.8 317 51.7
AUR62042927 Chenopodium quinoa HOM05D006908 ORTHO05D008662 1.6e-84 317.0 332 50.6
PSO063G2605 Papaver somniferum HOM05D006908 ORTHO05D008662 2.7e-84 316.2 315 52.7
Gohir.D09G082700 Gossypium hirsutum HOM05D006908 ORTHO05D008662 2.3e-83 313.2 320 52.2
Gohir.A09G082800 Gossypium hirsutum HOM05D006908 ORTHO05D008662 3.0e-83 312.8 306 53.3
CSS0010187 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 3.9e-83 312.4 269 58.7
Potri.001G181200 Populus trichocarpa HOM05D006908 ORTHO05D008662 4.3e-82 308.9 286 56.3
HPP92_003725 Vanilla planifolia HOM05D006908 ORTHO05D008662 4.3e-82 308.9 306 50.0
unitig_52.g17450 Utricularia gibba HOM05D006908 ORTHO05D008662 2.3e-80 303.1 304 51.0
Os06g0639300 Oryza sativa ssp. japonica HOM05D006908 ORTHO05D008662 3.4e-79 299.3 333 48.3
TWI75G1463 Tripterygium wilfordii HOM05D006908 ORTHO05D008662 3.4e-79 299.3 305 52.1
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 1.7e-78 297.0 314 55.7
Solyc03g120130.4 Solanum lycopersicum HOM05D006908 ORTHO05D008662 1.7e-78 297.0 319 48.6
CAN.G438.72 Capsicum annuum HOM05D006908 ORTHO05D008662 1.1e-77 294.3 265 55.1
Psat5g298720 Pisum sativum HOM05D006908 ORTHO05D008662 2.7e-76 289.7 273 51.6
Aqoxy7G01689 Aquilegia oxysepala HOM05D006908 ORTHO05D008662 1.0e-75 287.7 334 49.4
Zm00001eb275430 Zea mays HOM05D006908 ORTHO05D008662 1.5e-74 283.9 331 46.5
Nitab4.5_0000671g0150 Nicotiana tabacum HOM05D006908 ORTHO05D008662 1.2e-73 280.8 328 45.4
SEGI_13943 Sequoiadendron giganteum HOM05D006908 ORTHO05D008662 4.7e-73 278.9 348 43.4
Peaxi162Scf00015g00453 Petunia axillaris HOM05D006908 ORTHO05D008662 8.9e-72 274.6 320 45.9
AUR62016450 Chenopodium quinoa HOM05D006908 ORTHO05D008662 1.3e-70 270.8 273 52.0
Cpa.g.sc0.185 Carica papaya HOM05D006908 ORTHO05D008662 1.9e-69 266.9 212 65.6
Hma1.2p1_0323F.1_g125130 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 9.2e-69 264.6 320 45.9
Cfa002075 Carpinus fangiana HOM05D006908 ORTHO05D008662 7.8e-68 261.5 243 55.6
ATR0602G186 Amborella trichopoda HOM05D006908 ORTHO05D008662 9.5e-66 254.6 249 51.0
SHI10939 Sapria himalayana HOM05D006908 ORTHO05D008662 2.8e-65 253.1 248 52.4
Mapoly0072s0004 Marchantia polymorpha HOM05D006908 ORTHO05D008662 3.8e-62 242.7 330 43.0
Pp3c16_8290 Physcomitrium patens HOM05D006908 ORTHO05D008662 1.3e-59 234.2 358 37.4
Lsat_1_v5_gn_1_35121 Lactuca sativa HOM05D006908 ORTHO05D008662 2.8e-57 226.5 216 55.6
AagrBONN_evm.TU.Sc2ySwM_344.5185 Anthoceros agrestis HOM05D006908 ORTHO05D008662 1.4e-56 224.2 322 40.7
MBI15_g13424_MAGBIO Magnolia biondii HOM05D006908 ORTHO05D008662 1.4e-56 224.2 261 49.4
AUR62033073 Chenopodium quinoa HOM05D006908 ORTHO05D008662 8.4e-54 214.9 271 46.5
C09p24020 Brassica napus HOM05D006908 ORTHO05D008662 6.0e-52 208.8 178 60.7
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 1.8e-48 197.2 311 35.4
AL2G41640 Arabidopsis lyrata HOM05D006908 ORTHO05D008662 1.5e-47 194.1 146 68.5
CSS0029579 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 3.4e-47 193.0 179 54.7
FAN02G3381 Fragaria x ananassa HOM05D006908 ORTHO05D008662 1.8e-35 154.1 228 40.8
BolC9t55322H Brassica oleracea HOM05D006908 ORTHO05D008662 2.0e-31 140.6 89 75.3
SGA_v2.0_scaffold37G14828 Striga asiatica HOM05D006908 ORTHO05D008662 2.6e-31 140.2 134 53.7
SMO347G0515 Selaginella moellendorffii HOM05D006908 ORTHO05D008662 1.5e-26 124.4 135 45.9
Actinidia32749 Actinidia chinensis HOM05D006908 ORTHO05D008662 2.7e-20 103.6 73 67.1
Cpa.g.sc41.12 Carica papaya HOM05D006908 ORTHO05D008662 1.5e-18 97.8 79 65.8
CANSAT54G1478 Cannabis sativa HOM05D002956 ORTHO05D008031 2.8e-09 67.0 196 27.6
PSO210G0829 Papaver somniferum HOM05D002553 ORTHO05D002767 4.1e-08 63.2 233 28.3
Mapoly0041s0084 Marchantia polymorpha HOM05D006745 ORTHO05D008449 5.3e-08 62.8 239 25.9
Gohir.A07G121300 Gossypium hirsutum HOM05D002956 ORTHO05D008031 9.1e-08 62.0 108 30.6
PSO832G1112 Papaver somniferum HOM05D002553 ORTHO05D002767 1.5e-07 61.2 234 28.6
Gohir.D07G125600 Gossypium hirsutum HOM05D002956 ORTHO05D008031 2.6e-07 60.5 108 29.6
Gorai.001G135400 Gossypium raimondii HOM05D002956 ORTHO05D008031 2.6e-07 60.5 108 29.6
Pp3c3_3430 Physcomitrium patens HOM05D002956 ORTHO05D008031 2.6e-07 60.5 163 27.0
Cpa.g.sc34.183 Carica papaya HOM05D002956 ORTHO05D008031 4.5e-07 59.7 90 36.7
Potri.009G068400 Populus trichocarpa HOM05D002956 ORTHO05D008031 4.5e-07 59.7 160 26.2
Aa31LG2G1020 Aethionema arabicum HOM05D006745 ORTHO05D008449 5.9e-07 59.3 179 27.9
SMO351G0211 Selaginella moellendorffii HOM05D001602 ORTHO05D001470 5.9e-07 59.3 143 30.8
MD15G1238900 Malus domestica HOM05D006745 ORTHO05D008449 7.7e-07 58.9 179 29.1
TWI31G0384 Tripterygium wilfordii HOM05D002956 ORTHO05D008031 1.0e-06 58.5 180 26.7
A09p13970 Brassica napus HOM05D006745 ORTHO05D008449 1.3e-06 58.2 213 26.8
Carub.0002s0099 Capsella rubella HOM05D006745 ORTHO05D008449 1.3e-06 58.2 177 28.8
EL10Ac6g15168 Beta vulgaris HOM05D006745 ORTHO05D008449 1.7e-06 57.8 197 26.4
Os07g0641600 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D008031 1.7e-06 57.8 154 26.0
BcaC04g22678 Brassica carinata HOM05D006745 ORTHO05D008449 2.2e-06 57.4 179 27.9
BolC9t54579H Brassica oleracea HOM05D006745 ORTHO05D008449 2.2e-06 57.4 179 27.9
FvH4_3g28160 Fragaria vesca HOM05D002956 ORTHO05D008031 2.2e-06 57.4 150 26.7
MCO09G571 Micromonas commoda HOM05D014140 ORTHO05D015854 2.2e-06 57.4 162 29.0
AagrBONN_evm.TU.Sc2ySwM_228.3973 Anthoceros agrestis HOM05D002956 ORTHO05D008031 2.9e-06 57.0 112 31.2
Thecc.09G246000 Theobroma cacao HOM05D002956 ORTHO05D008031 2.9e-06 57.0 90 33.3
Cpa.g.c43825 Carica papaya HOM05D006908 ORTHO05D008662 3.8e-06 56.6 34 76.5
MD00G1134600 Malus domestica HOM05D002956 ORTHO05D008031 3.8e-06 56.6 100 32.0
Manes.02G137300 Manihot esculenta HOM05D002956 ORTHO05D008031 3.8e-06 56.6 92 35.9
Prupe.4G260400 Prunus persica HOM05D002956 ORTHO05D008031 3.8e-06 56.6 90 34.4
BcaB07g31542 Brassica carinata HOM05D006745 ORTHO05D008449 5.0e-06 56.2 179 27.9
AUR62003702 Chenopodium quinoa HOM05D006745 ORTHO05D008449 5.0e-06 56.2 197 25.9
Cre17.g747647 Chlamydomonas reinhardtii HOM05D002553 ORTHO05D002767 5.0e-06 56.2 144 30.6
COL.COLO4_07384 Corchorus olitorius HOM05D002956 ORTHO05D008031 5.0e-06 56.2 90 35.6
AL2G11270 Arabidopsis lyrata HOM05D006745 ORTHO05D008449 8.5e-06 55.5 179 27.9
Lalb_Chr09g0321491 Lupinus albus HOM05D006745 ORTHO05D008449 8.5e-06 55.5 167 29.9
TPR.G25110 Trifolium pratense HOM05D006745 ORTHO05D008449 8.5e-06 55.5 177 29.4
Zm00001eb329010 Zea mays HOM05D002956 ORTHO05D008031 8.5e-06 55.5 106 27.4


User provided reference genes

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