Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 5.9e-132 474.2 233 100.0
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 4.1e-77 292.0 153 92.2
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 7.1e-77 291.2 151 90.7
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 7.1e-77 291.2 153 92.8
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 9.2e-77 290.8 153 92.8
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 2.1e-76 289.7 151 91.4
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 2.1e-76 289.7 153 90.8
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 3.5e-76 288.9 152 90.1
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 1.7e-75 286.6 150 91.3
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 1.7e-75 286.6 150 91.3
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 5.1e-75 285.0 151 90.7
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 1.5e-74 283.5 151 90.7
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 1.9e-74 283.1 151 90.1
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 9.6e-74 280.8 153 89.5
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 5.2e-72 275.0 169 81.1
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 6.6e-67 258.1 153 83.0
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 1.5e-66 256.9 150 77.3
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 1.6e-65 253.4 153 75.2
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 2.8e-65 252.7 153 78.4
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 1.4e-64 250.4 148 79.7
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 4.0e-64 248.8 153 73.2
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 4.0e-64 248.8 152 74.3
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 5.3e-64 248.4 151 74.2
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 6.9e-64 248.1 153 73.9
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 6.9e-64 248.1 151 73.5
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 9.0e-64 247.7 151 73.5
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 1.5e-63 246.9 153 73.2
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 2.0e-63 246.5 153 73.2
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 3.4e-63 245.7 153 73.2
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 4.5e-63 245.4 153 74.5
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 7.6e-63 244.6 153 73.2
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 7.6e-63 244.6 153 72.5
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 1.3e-62 243.8 153 71.2
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.3e-62 243.8 148 73.6
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.3e-62 243.8 150 73.3
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.3e-62 243.8 150 73.3
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 1.3e-62 243.8 153 71.9
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 1.7e-62 243.4 153 71.9
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 2.9e-62 242.7 153 69.9
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.8e-62 242.3 153 71.9
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 3.8e-62 242.3 153 72.5
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 3.8e-62 242.3 150 72.7
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 3.8e-62 242.3 153 72.5
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 4.9e-62 241.9 150 72.0
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 4.9e-62 241.9 150 72.0
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 4.9e-62 241.9 151 72.2
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 4.9e-62 241.9 153 73.2
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 4.9e-62 241.9 150 73.3
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 6.4e-62 241.5 150 72.0
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 6.4e-62 241.5 153 70.6
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 8.4e-62 241.1 145 74.5
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 8.4e-62 241.1 150 72.7
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 1.4e-61 240.4 153 72.5
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 1.4e-61 240.4 165 67.3
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.4e-61 239.6 151 72.8
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 2.4e-61 239.6 153 71.9
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 2.4e-61 239.6 153 71.2
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 3.2e-61 239.2 153 69.9
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 3.2e-61 239.2 153 70.6
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 5.4e-61 238.4 153 71.9
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 7.1e-61 238.0 153 69.9
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 7.1e-61 238.0 153 70.6
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 9.3e-61 237.7 150 70.7
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 9.3e-61 237.7 153 70.6
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 1.2e-60 237.3 153 69.3
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 1.2e-60 237.3 153 70.6
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 1.6e-60 236.9 153 72.5
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 1.6e-60 236.9 153 71.9
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 1.6e-60 236.9 152 73.0
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 3.5e-60 235.7 150 72.0
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 4.6e-60 235.3 131 87.8
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 4.6e-60 235.3 150 72.7
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 4.6e-60 235.3 153 69.3
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 6.0e-60 235.0 153 72.5
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 6.0e-60 235.0 150 70.0
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 6.0e-60 235.0 153 70.6
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 7.9e-60 234.6 145 73.8
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 1.0e-59 234.2 153 68.6
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 1.3e-59 233.8 153 68.0
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 1.3e-59 233.8 150 71.3
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 1.8e-59 233.4 153 68.6
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 2.3e-59 233.0 150 70.0
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 2.3e-59 233.0 153 67.3
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 2.3e-59 233.0 145 71.7
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.9e-59 232.3 153 68.6
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 5.1e-59 231.9 150 69.3
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 6.7e-59 231.5 154 64.3
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 6.7e-59 231.5 150 69.3
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 6.7e-59 231.5 150 70.0
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 6.7e-59 231.5 150 68.0
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 8.7e-59 231.1 153 69.3
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 8.7e-59 231.1 153 67.3
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 1.1e-58 230.7 153 69.3
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 1.9e-58 229.9 153 64.7
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 2.5e-58 229.6 153 66.7
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 2.5e-58 229.6 153 68.0
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 3.3e-58 229.2 151 69.5
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 4.3e-58 228.8 150 68.0
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 4.3e-58 228.8 153 67.3
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 4.3e-58 228.8 153 71.2
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 5.6e-58 228.4 147 69.4
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 5.6e-58 228.4 153 69.3
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 2.1e-57 226.5 145 71.0
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 2.8e-57 226.1 153 68.0
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 2.8e-57 226.1 155 67.1
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 3.7e-57 225.7 155 65.8
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 3.7e-57 225.7 150 67.3
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 4.8e-57 225.3 150 67.3
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 8.1e-57 224.6 154 64.9
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 8.1e-57 224.6 150 69.3
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 1.1e-56 224.2 145 69.7
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 1.8e-56 223.4 152 65.8
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 5.3e-56 221.9 152 65.1
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 9.0e-56 221.1 152 69.1
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 1.2e-55 220.7 151 68.2
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 1.5e-55 220.3 150 68.0
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 5.8e-55 218.4 152 65.1
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 1.3e-54 217.2 150 66.0
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 1.3e-54 217.2 150 64.7
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 2.9e-54 216.1 148 64.9
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 8.4e-54 214.5 150 65.3
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 1.3e-51 207.2 155 63.9
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 3.9e-51 205.7 155 62.6
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 5.6e-50 201.8 150 63.3
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 6.9e-48 194.9 145 55.9
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 1.2e-47 194.1 142 62.0
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 2.0e-47 193.4 146 56.2
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 1.9e-45 186.8 122 71.3
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 1.9e-45 186.8 120 69.2
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.2e-44 184.1 152 57.2
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.3e-43 180.6 124 66.1
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 2.4e-40 169.9 111 67.6
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 1.5e-39 167.2 111 66.7
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 1.5e-39 167.2 145 49.0
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 9.3e-37 157.9 179 49.2
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 6.7e-35 151.8 151 47.7
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.2e-31 141.0 94 69.1
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 2.1e-28 130.2 75 76.0
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 2.1e-28 130.2 150 42.0
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.8e-27 127.1 78 74.4
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 8.8e-27 124.8 99 57.6
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 2.6e-26 123.2 125 47.2
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 7.4e-26 121.7 75 72.0
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 1.7e-25 120.6 75 69.3
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 1.5e-23 114.0 75 65.3
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.6e-23 113.2 58 84.5
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.6e-23 113.2 58 84.5
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 8.5e-22 108.2 79 60.8
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 4.2e-21 105.9 78 64.1
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 5.5e-21 105.5 89 56.2
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 1.1e-18 97.8 145 33.1
Solyc12g043060.1 Solanum lycopersicum HOM05D005040 ORTHO05D005984 1.7e-09 67.4 48 64.6
TAR383G0869 Trochodendron aralioides HOM05D005040 ORTHO05D005984 2.9e-06 56.6 48 58.3


User provided reference genes

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