Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 5.2e-72 274.2 136 100.0
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 2.6e-71 271.9 136 99.3
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 7.5e-71 270.4 136 98.5
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 7.5e-71 270.4 136 98.5
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 7.5e-71 270.4 136 98.5
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 3.7e-70 268.1 136 97.8
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 1.6e-68 262.7 136 95.6
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 2.1e-68 262.3 136 93.4
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 2.7e-68 261.9 136 93.4
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 3.5e-68 261.5 136 95.6
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 4.6e-68 261.2 136 92.6
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 4.6e-68 261.2 136 92.6
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 4.6e-68 261.2 136 93.4
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 6.0e-68 260.8 136 92.6
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 6.0e-68 260.8 136 92.6
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 6.0e-68 260.8 136 95.6
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 1.3e-67 259.6 136 92.6
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 1.3e-67 259.6 136 92.6
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 2.3e-67 258.8 136 91.9
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.0e-67 258.5 136 91.9
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 5.1e-67 257.7 136 93.4
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 5.1e-67 257.7 136 93.4
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 6.6e-67 257.3 136 92.6
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 8.6e-67 256.9 136 91.2
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 8.6e-67 256.9 136 90.4
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 1.5e-66 256.1 136 90.4
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 1.5e-66 256.1 136 91.2
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 1.5e-66 256.1 136 91.9
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 2.5e-66 255.4 136 90.4
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 4.3e-66 254.6 136 91.2
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 4.3e-66 254.6 136 90.4
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 9.5e-66 253.4 149 87.2
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 9.5e-66 253.4 136 89.7
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 9.5e-66 253.4 136 91.2
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.2e-65 253.1 136 90.4
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 1.2e-65 253.1 136 89.7
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 2.8e-65 251.9 137 90.5
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 2.8e-65 251.9 136 89.7
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 4.7e-65 251.1 136 89.0
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 8.1e-65 250.4 136 88.2
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 1.4e-64 249.6 136 89.0
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 1.8e-64 249.2 136 86.0
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 1.8e-64 249.2 136 87.5
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 2.4e-64 248.8 137 90.5
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 4.0e-64 248.1 136 86.8
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 5.2e-64 247.7 136 86.8
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 5.2e-64 247.7 136 87.5
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 5.2e-64 247.7 136 88.2
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 6.8e-64 247.3 136 87.5
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 6.8e-64 247.3 136 86.0
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 6.8e-64 247.3 138 88.4
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 6.8e-64 247.3 138 88.4
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 8.9e-64 246.9 138 88.4
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 1.5e-63 246.1 136 87.5
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 2.6e-63 245.4 136 86.0
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 3.4e-63 245.0 136 87.5
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 3.4e-63 245.0 136 87.5
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 4.4e-63 244.6 136 87.5
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.3e-62 243.0 159 78.0
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 1.7e-62 242.7 136 86.0
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 3.8e-62 241.5 137 86.1
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 1.1e-61 240.0 137 87.6
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 5.4e-61 237.7 139 87.1
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 7.8e-60 233.8 136 84.6
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 7.8e-60 233.8 172 70.3
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 1.3e-59 233.0 153 76.5
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.7e-59 232.6 148 78.4
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.0e-59 231.9 136 83.8
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 3.9e-59 231.5 136 86.0
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 6.6e-59 230.7 136 77.9
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 1.9e-58 229.2 136 77.9
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 2.5e-58 228.8 169 72.8
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 3.3e-58 228.4 136 77.9
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 4.3e-58 228.0 189 66.1
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 4.6e-52 208.0 120 85.8
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 1.3e-51 206.5 136 81.6
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 1.5e-50 203.0 136 75.0
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 9.6e-50 200.3 169 67.5
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 1.3e-49 199.9 106 90.6
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 2.8e-49 198.7 110 87.3
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 6.2e-49 197.6 124 79.8
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 6.9e-48 194.1 105 87.6
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 4.5e-47 191.4 105 86.7
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 1.7e-46 189.5 136 72.8
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 5.4e-45 184.5 136 71.3
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 6.0e-44 181.0 136 72.1
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 6.0e-44 181.0 107 81.3
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 7.9e-44 180.6 138 70.3
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 2.5e-42 175.6 156 62.8
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 1.3e-38 163.3 136 64.0
Thhalv10001067m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 8.4e-38 160.6 80 97.5
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 1.1e-37 160.2 136 61.8
Carub.0002s0990 Capsella rubella HOM05D004554 ORTHO05D005360 3.2e-37 158.7 80 97.5
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 1.0e-35 153.7 77 98.7
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 1.0e-35 153.7 77 98.7
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 1.0e-35 153.7 77 98.7
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 1.0e-35 153.7 77 98.7
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 1.0e-35 153.7 142 49.3
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 1.3e-35 153.3 82 92.7
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 1.3e-35 153.3 82 92.7
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 1.1e-34 150.2 81 90.1
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 3.3e-34 148.7 77 92.2
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 4.3e-34 148.3 77 92.2
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 7.4e-34 147.5 77 92.2
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 9.6e-34 147.1 77 93.5
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 9.6e-34 147.1 77 93.5
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 9.6e-34 147.1 77 93.5
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 9.6e-34 147.1 77 92.2
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 1.3e-33 146.7 82 86.6
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 1.6e-33 146.4 80 91.2
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 2.1e-33 146.0 77 92.2
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 2.1e-33 146.0 77 90.9
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 3.7e-33 145.2 77 90.9
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 3.7e-33 145.2 77 90.9
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 1.1e-32 143.7 77 89.6
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 1.1e-32 143.7 77 89.6
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 1.8e-32 142.9 133 49.6
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 1.8e-32 142.9 82 84.1
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 2.4e-32 142.5 128 50.8
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 3.1e-32 142.1 82 84.1
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 5.3e-32 141.4 77 88.3
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 6.9e-32 141.0 77 87.0
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 9.0e-32 140.6 155 49.0
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 2.0e-31 139.4 77 85.7
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 2.6e-31 139.0 77 84.4
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 1.0e-30 137.1 77 83.1
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 1.0e-30 137.1 82 79.3
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 1.3e-30 136.7 77 83.1
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 1.7e-30 136.3 113 61.1
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 1.7e-30 136.3 77 81.8
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 2.9e-30 135.6 77 83.1
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 6.5e-30 134.4 76 84.2
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 8.4e-30 134.0 77 81.8
Lj9P502T35 Lonicera japonica HOM05D004554 ORTHO05D005360 1.1e-29 133.7 87 75.9
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 3.2e-29 132.1 75 84.0
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 1.3e-27 126.7 74 78.4
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 1.3e-27 126.7 126 56.3
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 5.7e-26 121.3 116 58.6
Rhsim12G0192800 Rhododendron simsii HOM05D004554 ORTHO05D005360 7.4e-26 120.9 60 93.3
Eucgr.L03064 Eucalyptus grandis HOM05D004554 ORTHO05D005360 9.7e-26 120.6 60 93.3
Atru.chr2.1838 Acer truncatum HOM05D004554 ORTHO05D005360 9.0e-24 114.0 56 96.4
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 9.0e-24 114.0 128 50.8
MD08G1243200 Malus domestica HOM05D004554 ORTHO05D005360 3.4e-23 112.1 56 94.6
MD15G1436800 Malus domestica HOM05D004554 ORTHO05D005360 3.4e-23 112.1 56 94.6
Cc02_g38640 Coffea canephora HOM05D004554 ORTHO05D005360 1.0e-22 110.5 56 92.9
Lalb_Chr08g0237961 Lupinus albus HOM05D004554 ORTHO05D005360 1.0e-22 110.5 56 92.9
CsaV3_2G019720 Cucumis sativus L. HOM05D004554 ORTHO05D005360 2.2e-22 109.4 56 89.3
HanXRQChr09g0274931 Helianthus annuus HOM05D004554 ORTHO05D005360 2.9e-22 109.0 56 89.3
Carub.0002s2706 Capsella rubella HOM05D004554 ORTHO05D005360 3.8e-22 108.6 56 92.9
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 6.5e-22 107.8 57 93.0
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 8.5e-22 107.5 56 94.6
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 3.2e-21 105.5 75 60.0
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 1.2e-20 103.6 56 91.1
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 4.3e-18 95.1 50 90.0
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 4.5e-15 85.1 45 88.9
RcHm_v2.0_Chr2g0154941 Rosa chinensis HOM05D004554 ORTHO05D005360 1.7e-14 83.2 44 86.4
Haze_26443 Corylus avellana HOM05D000849 ORTHO05D005360 6.1e-12 74.7 109 36.7
arahy.Tifrunner.gnm1.ann1.QTZM33 Arachis hypogaea HOM05D004554 ORTHO05D005360 1.8e-08 63.2 41 75.6
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 4.1e-08 62.0 136 28.7
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 7.0e-08 61.2 138 31.2
QL11p051435 Quercus lobata HOM05D004554 ORTHO05D005360 1.2e-07 60.5 29 96.6
Cpa.g.c40005 Carica papaya HOM05D004554 ORTHO05D005360 8.5e-06 54.3 25 92.0


User provided reference genes

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