Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 3.8e-233 811.2 433 100.0
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 3.2e-184 648.7 435 81.4
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 3.6e-183 645.2 435 80.9
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 5.2e-182 641.3 434 80.6
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 2.8e-180 635.6 433 80.1
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 8.3e-180 634.0 433 78.1
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 2.0e-170 602.8 434 76.5
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 2.7e-170 602.4 434 76.3
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 1.4e-166 590.1 434 75.6
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 6.4e-164 581.3 433 75.1
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 1.6e-162 576.6 433 74.6
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 7.3e-160 567.8 437 73.5
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 1.2e-159 567.0 440 71.8
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 1.9e-155 553.1 442 72.9
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 6.4e-148 528.1 437 71.2
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 6.0e-146 521.5 461 67.7
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 1.1e-120 437.6 462 60.2
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 1.7e-108 397.1 449 55.0
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 2.2e-108 396.7 463 54.2
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 2.7e-106 389.8 452 53.1
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 2.4e-102 376.7 439 51.7
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 3.8e-100 369.4 448 50.2
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 3.2e-99 366.3 444 51.8
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 1.0e-97 361.3 463 49.0
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 5.7e-96 355.5 466 48.1
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 3.7e-95 352.8 460 48.9
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 1.1e-94 351.3 463 49.0
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 6.9e-94 348.6 462 47.0
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 1.5e-93 347.4 444 49.3
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 2.0e-93 347.1 447 53.2
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 2.0e-93 347.1 447 53.5
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 4.5e-93 345.9 449 53.0
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 1.3e-92 344.4 449 52.8
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 1.7e-92 344.0 446 51.6
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 6.5e-92 342.0 448 48.7
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 7.2e-91 338.6 452 49.1
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 3.6e-90 336.3 445 48.1
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 4.7e-90 335.9 443 47.9
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 1.0e-89 334.7 448 48.2
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 9.7e-88 328.2 454 48.5
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 1.7e-87 327.4 462 49.1
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 2.2e-87 327.0 471 48.4
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 3.7e-87 326.2 478 48.7
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 1.1e-86 324.7 439 47.4
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 1.1e-86 324.7 474 47.5
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 1.4e-86 324.3 439 47.2
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 4.1e-86 322.8 449 49.0
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 1.5e-85 320.9 444 45.9
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 5.9e-85 318.9 465 45.2
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 5.9e-85 318.9 468 44.7
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 7.7e-85 318.5 482 47.5
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 7.7e-85 318.5 465 46.2
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 8.5e-84 315.1 460 45.0
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 1.5e-83 314.3 438 46.6
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 7.2e-83 312.0 475 47.4
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 2.7e-82 310.1 468 44.7
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 3.6e-82 309.7 363 51.2
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 1.0e-81 308.1 526 43.7
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 6.7e-81 305.4 470 47.0
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 2.0e-80 303.9 442 45.9
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 3.3e-80 303.1 386 49.0
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 1.7e-79 300.8 450 43.1
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 4.8e-79 299.3 466 43.8
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 1.4e-78 297.7 491 42.4
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 1.8e-78 297.4 502 45.4
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 5.3e-78 295.8 442 44.8
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 7.0e-78 295.4 371 48.8
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 1.3e-76 291.2 441 44.9
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 1.3e-76 291.2 441 44.9
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 6.5e-76 288.9 473 43.3
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 6.5e-76 288.9 460 45.0
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 1.5e-75 287.7 387 46.0
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 7.2e-75 285.4 293 56.3
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 4.7e-74 282.7 482 41.5
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 8.0e-74 282.0 440 48.0
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 1.4e-73 281.2 632 37.8
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.8e-73 280.8 451 47.5
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 2.3e-73 280.4 359 49.0
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 3.0e-73 280.0 402 45.8
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 4.0e-73 279.6 520 41.9
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.5e-72 277.7 451 46.1
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 2.0e-72 277.3 438 44.3
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 3.4e-72 276.6 455 45.9
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 3.4e-72 276.6 361 44.9
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 7.5e-72 275.4 451 45.9
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 9.8e-72 275.0 407 45.5
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 3.7e-71 273.1 328 50.6
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 4.8e-71 272.7 462 41.3
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 1.1e-70 271.6 411 43.8
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 4.1e-70 269.6 454 45.2
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 3.5e-69 266.5 414 41.1
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 5.9e-69 265.8 448 42.4
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 7.7e-69 265.4 446 41.0
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 1.7e-68 264.2 382 44.8
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 1.7e-68 264.2 330 48.2
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 2.2e-68 263.8 261 54.8
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 5.0e-68 262.7 336 47.0
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 5.5e-67 259.2 410 41.7
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 5.5e-67 259.2 444 45.0
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 1.6e-66 257.7 251 57.8
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 1.6e-66 257.7 417 42.9
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 2.1e-66 257.3 395 43.3
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 3.0e-65 253.4 384 41.9
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 1.2e-64 251.5 336 46.1
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.5e-64 251.1 442 45.5
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 2.6e-64 250.4 199 66.8
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 5.7e-64 249.2 419 39.4
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 1.3e-63 248.1 442 42.1
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 6.3e-63 245.7 410 40.5
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 6.3e-63 245.7 406 43.1
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 8.3e-63 245.4 406 41.1
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 1.1e-62 245.0 406 38.9
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 1.1e-62 245.0 407 41.5
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 1.6e-61 241.1 350 46.3
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 1.6e-61 241.1 349 45.8
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 2.3e-60 237.3 356 43.5
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 1.2e-58 231.5 370 42.7
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 3.6e-58 229.9 362 44.8
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 8.9e-57 225.3 280 48.2
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 2.0e-56 224.2 136 80.1
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 9.8e-56 221.9 348 42.5
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 2.2e-55 220.7 115 95.7
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 2.2e-55 220.7 385 40.8
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 2.9e-55 220.3 463 38.2
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 2.7e-53 213.8 433 37.6
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 1.2e-50 204.9 204 55.9
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 1.8e-49 201.1 476 35.1
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 1.8e-49 201.1 476 35.1
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 6.8e-49 199.1 240 51.7
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 4.9e-47 193.0 117 82.1
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 4.9e-47 193.0 117 82.1
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.6e-45 188.0 270 42.2
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 2.0e-45 187.6 101 90.1
Dinv30485 Davidia involucrata HOM05D003936 ORTHO05D004747 1.6e-42 177.9 408 37.3
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 9.8e-40 168.7 116 76.7
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 5.4e-38 162.9 97 81.4
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 1.2e-32 145.2 159 47.2
GSVIVG01026738001 Vitis vinifera HOM05D003936 ORTHO05D004747 2.6e-32 144.1 76 92.1
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 4.4e-32 143.3 294 34.7
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 3.2e-30 137.1 114 58.8
BcaB05g25239 Brassica carinata HOM05D003936 ORTHO05D004747 1.7e-28 131.3 66 97.0
QL08p064447 Quercus lobata HOM05D003936 ORTHO05D004747 1.5e-24 118.2 313 32.9
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 4.4e-24 116.7 196 41.8
Zm00001eb320360 Zea mays HOM05D003936 ORTHO05D004747 1.6e-21 108.2 331 31.7
PSO832G3729 Papaver somniferum HOM05D003936 ORTHO05D004747 1.0e-20 105.5 66 78.8
CBR_g28520 Chara braunii HOM05D003936 ORTHO05D004747 4.0e-17 93.6 106 48.1
CiPaw.02G160600 Carya illinoinensis HOM05D003936 ORTHO05D004747 6.9e-17 92.8 322 31.4
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis HOM05D003936 ORTHO05D004747 9.0e-17 92.4 88 54.5
MCO16G694 Micromonas commoda HOM05D003936 ORTHO05D003028 9.0e-17 92.4 105 44.8
Nitab4.5_0009138g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.5e-16 91.7 63 69.8
RcHm_v2.0_Chr2g0171141 Rosa chinensis HOM05D003936 ORTHO05D004747 3.4e-16 90.5 55 83.6
AagrBONN_evm.TU.Sc2ySwM_368.3374 Anthoceros agrestis HOM05D003936 ORTHO05D004747 7.1e-14 82.8 92 51.1
CDE09G0364 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 1.9e-11 74.7 249 30.1
Nitab4.5_0012293g0040 Nicotiana tabacum HOM05D003936 ORTHO05D004747 3.3e-11 73.9 37 86.5
BcaC05g26207 Brassica carinata HOM05D000898 ORTHO05D027121 9.6e-11 72.4 79 57.0
Ca_25898_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 3.6e-10 70.5 306 30.1
PRCOL_00001607 Prasinoderma coloniale HOM05D003936 ORTHO05D004747 3.1e-09 67.4 144 33.3
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 5.3e-09 66.6 52 57.7
Glyma.08G216000 Glycine max HOM05D003936 ORTHO05D004747 1.3e-07 62.0 37 67.6
AL1040U10020 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 8.4e-07 59.3 36 88.9
Ca_29111_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 1.1e-06 58.9 77 42.9
SMO172G0122 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 1.1e-06 58.9 67 49.3
Cre06.g264300 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 3.2e-06 57.4 83 43.4


User provided reference genes

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