Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g35050 Schrenkiella parvula HOM05D005915 ORTHO05D007239 8.9e-109 397.1 227 100.0
C06p53780 Brassica napus HOM05D005915 ORTHO05D007239 2.4e-85 319.3 228 83.8
A07p44990 Brassica napus HOM05D005915 ORTHO05D007239 4.0e-85 318.5 228 82.5
BcaB02g07251 Brassica carinata HOM05D005915 ORTHO05D007239 5.3e-85 318.2 223 84.3
BraA07t32004Z Brassica rapa HOM05D005915 ORTHO05D007239 1.2e-84 317.0 229 82.5
A07p26820 Brassica napus HOM05D005915 ORTHO05D007239 2.0e-84 316.2 222 82.0
BolC6t40396H Brassica oleracea HOM05D005915 ORTHO05D007239 4.5e-84 315.1 230 81.3
BraA07t30325Z Brassica rapa HOM05D005915 ORTHO05D007239 1.3e-83 313.5 223 79.4
BolC6t38110H Brassica oleracea HOM05D005915 ORTHO05D007239 2.2e-83 312.8 223 81.2
C06p29450 Brassica napus HOM05D005915 ORTHO05D007239 2.9e-83 312.4 223 82.1
Thhalv10019105m.g Eutrema salsugineum HOM05D005915 ORTHO05D007239 6.4e-83 311.2 227 83.3
AL2G40740 Arabidopsis lyrata HOM05D005915 ORTHO05D007239 8.7e-80 300.8 215 81.4
Carub.0002s2685 Capsella rubella HOM05D005915 ORTHO05D007239 5.6e-79 298.1 215 80.5
AT1G80700 Arabidopsis thaliana HOM05D005915 ORTHO05D007239 3.7e-78 295.4 215 79.5
BcaC08g45335 Brassica carinata HOM05D005915 ORTHO05D007239 1.1e-77 293.9 212 80.7
AT1G80980 Arabidopsis thaliana HOM05D005915 ORTHO05D007239 3.5e-73 278.9 215 76.7
BcaC08g47553 Brassica carinata HOM05D005915 ORTHO05D007239 1.3e-72 276.9 220 80.9
Aa31LG4G980 Aethionema arabicum HOM05D005915 ORTHO05D007239 1.3e-59 233.8 241 65.6
THA.LOC104812439 Tarenaya hassleriana HOM05D005915 ORTHO05D007239 2.6e-44 183.0 216 57.9
CARHR073810 Cardamine hirsuta HOM05D005915 ORTHO05D007239 7.0e-37 158.3 113 72.6
Actinidia25458 Actinidia chinensis HOM05D005915 ORTHO05D007239 5.5e-34 148.7 195 46.7
Dinv23302 Davidia involucrata HOM05D005915 ORTHO05D007239 4.7e-33 145.6 207 43.5
COL.COLO4_26669 Corchorus olitorius HOM05D005915 ORTHO05D007239 3.0e-32 142.9 226 46.5
Rhsim08G0207800 Rhododendron simsii HOM05D005915 ORTHO05D007239 4.0e-32 142.5 207 48.8
QL02p069532 Quercus lobata HOM05D005915 ORTHO05D007239 2.0e-31 140.2 223 42.6
Gohir.D09G090900 Gossypium hirsutum HOM05D005915 ORTHO05D007239 3.4e-31 139.4 234 47.4
Potri.003G180500 Populus trichocarpa HOM05D005915 ORTHO05D007239 3.4e-31 139.4 224 48.7
CiPaw.01G253100 Carya illinoinensis HOM05D005915 ORTHO05D007239 1.7e-30 137.1 198 48.5
Manes.11G064500 Manihot esculenta HOM05D005915 ORTHO05D007239 1.7e-30 137.1 189 47.6
Atru.chr6.915 Acer truncatum HOM05D005915 ORTHO05D007239 3.1e-29 132.9 195 48.2
ClCG07G012140 Citrullus lanatus HOM05D005915 ORTHO05D007239 3.1e-29 132.9 188 46.8
Gorai.006G107100 Gossypium raimondii HOM05D005915 ORTHO05D007239 3.1e-29 132.9 235 46.0
TWI18G1314 Tripterygium wilfordii HOM05D005915 ORTHO05D007239 3.1e-29 132.9 222 42.8
vmacro19042 Vaccinium macrocarpon HOM05D005915 ORTHO05D007239 9.1e-29 131.3 193 48.2
MELO3C017835.2 Cucumis melo HOM05D005915 ORTHO05D007239 2.0e-28 130.2 189 47.6
Gohir.A09G090900 Gossypium hirsutum HOM05D005915 ORTHO05D007239 3.5e-28 129.4 226 45.6
Duzib235G0368 Durio zibethinus HOM05D005915 ORTHO05D007239 5.9e-28 128.6 229 47.2
MSTRG.4689 Avicennia marina HOM05D005915 ORTHO05D007239 1.0e-27 127.9 184 48.4
Migut.D01097 Erythranthe guttata HOM05D005915 ORTHO05D007239 1.3e-27 127.5 171 45.0
SHI11251 Sapria himalayana HOM05D005915 ORTHO05D007239 1.3e-27 127.5 187 44.4
Oeu033656.3 Olea europaea HOM05D005915 ORTHO05D007239 1.7e-27 127.1 227 41.4
CsaV3_4G002020 Cucumis sativus L. HOM05D005915 ORTHO05D007239 3.8e-27 125.9 217 43.8
MD17G1221100 Malus domestica HOM05D005915 ORTHO05D007239 5.0e-27 125.6 242 43.4
PGR102G1994 Punica granatum HOM05D005915 ORTHO05D007239 8.5e-27 124.8 228 44.3
Nitab4.5_0009423g0020 Nicotiana tabacum HOM05D005915 ORTHO05D007239 1.1e-26 124.4 227 40.5
Ciclev10026473m.g Citrus clementina HOM05D005915 ORTHO05D007239 1.9e-26 123.6 226 46.5
PGSC0003DMG400014193 Solanum tuberosum HOM05D005915 ORTHO05D007239 1.9e-26 123.6 176 45.5
SGA_v2.0_scaffold89G27484 Striga asiatica HOM05D005915 ORTHO05D007239 3.2e-26 122.9 200 42.5
CANSAT56G1340 Cannabis sativa HOM05D005915 ORTHO05D007239 5.5e-26 122.1 192 48.4
Sed0026009 Sechium edule HOM05D005915 ORTHO05D007239 5.5e-26 122.1 198 45.5
Nitab4.5_0001454g0070 Nicotiana tabacum HOM05D005915 ORTHO05D007239 1.2e-25 120.9 230 37.4
Thecc.06G038900 Theobroma cacao HOM05D005915 ORTHO05D007239 1.6e-25 120.6 126 49.2
Solyc03g117090.3 Solanum lycopersicum HOM05D005915 ORTHO05D007239 2.1e-25 120.2 195 41.5
TWI12G0041 Tripterygium wilfordii HOM05D005915 ORTHO05D007239 3.6e-25 119.4 204 44.6
Sopen03g036000 Solanum pennellii HOM05D005915 ORTHO05D007239 6.1e-25 118.6 192 39.6
Prupe.7G069400 Prunus persica HOM05D005915 ORTHO05D007239 8.0e-25 118.2 207 44.9
PGR142G0337 Punica granatum HOM05D005915 ORTHO05D007239 1.0e-24 117.9 201 41.3
AL5G28080 Arabidopsis lyrata HOM05D005915 ORTHO05D007239 1.4e-24 117.5 102 75.5
arahy.Tifrunner.gnm1.ann1.DN9Y4W Arachis hypogaea HOM05D005915 ORTHO05D007239 1.4e-24 117.5 221 44.3
Lsat_1_v5_gn_4_85741 Lactuca sativa HOM05D005915 ORTHO05D007239 1.4e-24 117.5 178 43.8
Eucgr.J03100 Eucalyptus grandis HOM05D005915 ORTHO05D007239 3.0e-24 116.3 159 51.6
Sc12g0008470 Simmondsia chinensis HOM05D005915 ORTHO05D007239 3.0e-24 116.3 215 44.7
arahy.Tifrunner.gnm1.ann1.2L8LZM Arachis hypogaea HOM05D005915 ORTHO05D007239 4.0e-24 115.9 221 44.3
Sabra01G0033000 Salix brachista HOM05D005915 ORTHO05D007239 6.8e-24 115.2 213 47.4
Ca_20554_v3 Cicer arietinum L. HOM05D005915 ORTHO05D007239 8.8e-24 114.8 231 36.4
ECA232G2243 Erigeron canadensis HOM05D005915 ORTHO05D007239 2.0e-23 113.6 187 40.6
PSO063G1890 Papaver somniferum HOM05D005915 ORTHO05D007239 2.0e-23 113.6 154 42.9
HanXRQChr04g0107231 Helianthus annuus HOM05D005915 ORTHO05D007239 2.6e-23 113.2 155 45.2
Potri.001G047700 Populus trichocarpa HOM05D005915 ORTHO05D007239 2.6e-23 113.2 167 52.7
TPR.G38763 Trifolium pratense HOM05D005915 ORTHO05D007239 4.4e-23 112.5 231 41.1
Ah.05g171200 Amaranthus hybridus HOM05D005915 ORTHO05D007239 9.8e-23 111.3 210 42.9
PSO782G5373 Papaver somniferum HOM05D005915 ORTHO05D007239 1.3e-22 110.9 181 35.9
unitig_736.g22803 Utricularia gibba HOM05D005915 ORTHO05D007239 3.7e-22 109.4 182 40.7
FvH4_5g29190 Fragaria vesca HOM05D005915 ORTHO05D007239 4.9e-22 109.0 170 49.4
BolC3t13327H Brassica oleracea HOM05D005915 ORTHO05D007239 1.1e-21 107.8 117 59.8
TPR.G17738 Trifolium pratense HOM05D005915 ORTHO05D007239 1.1e-21 107.8 234 38.0
Lj3g0003301 Lotus japonicus HOM05D005915 ORTHO05D007239 1.4e-21 107.5 226 39.8
CSS0040460 Camellia sinensis var. sinensis HOM05D005915 ORTHO05D007239 2.4e-21 106.7 161 52.8
Glyma.08G216900 Glycine max HOM05D005915 ORTHO05D007239 2.4e-21 106.7 167 46.7
Phvul.010G159800 Phaseolus vulgaris HOM05D005915 ORTHO05D007239 2.4e-21 106.7 172 45.3
EL10As5g23598 Beta vulgaris HOM05D005915 ORTHO05D007239 3.1e-21 106.3 217 37.8
Psat7g259880 Pisum sativum HOM05D005915 ORTHO05D007239 9.1e-21 104.8 232 38.8
VMungo0331G1031 Vigna mungo HOM05D005915 ORTHO05D007239 1.2e-20 104.4 195 41.5
Aqoxy7G03485 Aquilegia oxysepala HOM05D005915 ORTHO05D007239 3.5e-20 102.8 193 40.9
HPP92_016367 Vanilla planifolia HOM05D005915 ORTHO05D007239 7.7e-20 101.7 160 43.8
HanXRQChr09g0274531 Helianthus annuus HOM05D005915 ORTHO05D007239 2.9e-19 99.8 101 53.5
Lalb_Chr01g0012181 Lupinus albus HOM05D005915 ORTHO05D007239 3.8e-19 99.4 246 41.1
Medtr8g060830 Medicago truncatula HOM05D005915 ORTHO05D007239 2.5e-18 96.7 165 47.3
SalBow6G5910 Salvia bowleyana HOM05D005915 ORTHO05D007239 3.3e-18 96.3 89 57.3
TAR633G0597 Trochodendron aralioides HOM05D005915 ORTHO05D007239 5.6e-18 95.5 221 33.0
Medtr4g006550 Medicago truncatula HOM05D005915 ORTHO05D007239 7.2e-18 95.1 165 46.7
Oeu008050.2 Olea europaea HOM05D005915 ORTHO05D007239 7.2e-18 95.1 155 43.9
PSO339G3366 Papaver somniferum HOM05D005915 ORTHO05D007239 2.8e-17 93.2 134 42.5
Hund00452 Selenicereus undatus HOM05D005915 ORTHO05D007239 3.6e-17 92.8 254 39.8
Nn2g12284 Nelumbo nucifera HOM05D005915 ORTHO05D007239 4.7e-17 92.4 210 33.8
AUR62027568 Chenopodium quinoa HOM05D005915 ORTHO05D007239 6.1e-17 92.0 204 44.6
AUR62022762 Chenopodium quinoa HOM05D005915 ORTHO05D007239 1.0e-16 91.3 144 52.1
RcHm_v2.0_Chr7g0221831 Rosa chinensis HOM05D005915 ORTHO05D007239 1.4e-16 90.9 160 46.2
Nitab4.5_0004330g0010 Nicotiana tabacum HOM05D005915 ORTHO05D007239 2.0e-15 87.0 115 51.3
ATR1120G130 Amborella trichopoda HOM05D005915 ORTHO05D007239 4.4e-15 85.9 136 52.2
FAN18G1559 Fragaria x ananassa HOM05D005915 ORTHO05D007239 9.8e-15 84.7 149 50.3
Mapoly0140s0034 Marchantia polymorpha HOM05D005915 ORTHO05D007239 2.2e-14 83.6 99 44.4
Zm00001eb174980 Zea mays HOM05D005915 ORTHO05D007239 3.7e-14 82.8 143 45.5
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 6.4e-14 82.0 63 73.0
Dinv21397 Davidia involucrata HOM05D005915 ORTHO05D007239 4.1e-13 79.3 202 37.1
CDE05G3202 Ceratophyllum demersum HOM05D005915 ORTHO05D007239 5.9e-12 75.5 99 58.6
Peaxi162Scf00332g00322 Petunia axillaris HOM05D005915 ORTHO05D007239 5.9e-12 75.5 213 29.1
Cc04_g04930 Coffea canephora HOM05D005915 ORTHO05D007239 7.8e-12 75.1 111 43.2
FAN08G0623 Fragaria x ananassa HOM05D005915 ORTHO05D007239 1.7e-11 73.9 204 37.7
SEGI_14387 Sequoiadendron giganteum HOM05D005915 ORTHO05D007239 3.0e-11 73.2 203 31.5
Os08g0278100 Oryza sativa ssp. japonica HOM05D005915 ORTHO05D007239 1.5e-10 70.9 185 36.2
Glyma.07G025532 Glycine max HOM05D005915 ORTHO05D007239 4.3e-10 69.3 48 60.4
ClCG00G004860 Citrullus lanatus HOM05D005915 ORTHO05D007239 5.6e-10 68.9 84 46.4
Haze_16650 Corylus avellana HOM05D005915 ORTHO05D007239 8.0e-09 65.1 48 62.5
Actinidia25450 Actinidia chinensis HOM05D005915 ORTHO05D007239 2.3e-08 63.5 41 70.7
GSVIVG01017559001 Vitis vinifera HOM05D005915 ORTHO05D007239 5.2e-08 62.4 131 41.2
GSVIVG01017558001 Vitis vinifera HOM05D005915 ORTHO05D007239 1.2e-07 61.2 87 42.5
Cpa.g.sc0.147 Carica papaya HOM05D005915 ORTHO05D007239 1.5e-07 60.8 112 39.3
Pp3c9_20610 Physcomitrium patens HOM05D005915 ORTHO05D007239 3.4e-07 59.7 185 29.7
Prupe.1G199000 Prunus persica HOM05D005915 ORTHO05D007239 5.8e-07 58.9 123 47.2
CBR_g23038 Chara braunii HOM05D005915 ORTHO05D007239 8.3e-06 55.1 114 31.6


User provided reference genes

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