Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 6.7e-26 120.2 72 100.0
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 4.0e-23 110.9 69 82.6
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 5.8e-22 107.1 67 76.1
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 3.8e-21 104.4 48 95.8
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 3.8e-21 104.4 48 95.8
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 3.8e-21 104.4 48 95.8
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 3.8e-21 104.4 48 95.8
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 5.0e-21 104.0 73 87.7
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 3.2e-20 101.3 47 95.7
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 3.2e-20 101.3 47 95.7
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 2.7e-19 98.2 68 64.7
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 4.6e-19 97.4 47 91.5
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 6.1e-19 97.1 67 67.2
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 1.0e-18 96.3 67 88.1
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 1.3e-18 95.9 76 85.5
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 1.3e-18 95.9 68 85.3
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 1.8e-18 95.5 48 83.3
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 2.3e-18 95.1 47 85.1
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 3.0e-18 94.7 75 86.7
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 3.0e-18 94.7 75 86.7
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 3.0e-18 94.7 75 86.7
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 3.0e-18 94.7 66 65.2
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 3.0e-18 94.7 67 62.7
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 6.7e-18 93.6 70 85.7
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 6.7e-18 93.6 69 87.0
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 6.7e-18 93.6 67 64.2
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 6.7e-18 93.6 68 82.4
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 8.7e-18 93.2 67 59.7
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 8.7e-18 93.2 67 59.7
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 1.1e-17 92.8 47 80.9
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 1.1e-17 92.8 68 61.8
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 1.9e-17 92.0 68 61.8
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 2.5e-17 91.7 50 78.0
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 2.5e-17 91.7 67 61.2
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 3.3e-17 91.3 66 63.6
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 5.7e-17 90.5 64 64.1
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 9.7e-17 89.7 67 59.7
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 9.7e-17 89.7 68 60.3
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 9.7e-17 89.7 65 61.5
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 1.3e-16 89.4 66 57.6
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 1.3e-16 89.4 47 78.7
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 1.3e-16 89.4 47 78.7
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 2.2e-16 88.6 68 57.4
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 2.8e-16 88.2 49 73.5
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 4.8e-16 87.4 67 55.2
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 4.8e-16 87.4 41 92.7
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 6.3e-16 87.0 46 76.1
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 6.3e-16 87.0 67 56.7
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 6.3e-16 87.0 68 55.9
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 6.3e-16 87.0 64 60.9
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 6.3e-16 87.0 68 57.4
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 6.3e-16 87.0 68 57.4
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 8.2e-16 86.7 66 54.5
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 8.2e-16 86.7 68 55.9
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 1.1e-15 86.3 49 71.4
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 1.1e-15 86.3 65 55.4
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 1.1e-15 86.3 46 73.9
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 1.1e-15 86.3 66 56.1
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 1.1e-15 86.3 68 55.9
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 1.4e-15 85.9 49 71.4
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 1.8e-15 85.5 67 56.7
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 1.8e-15 85.5 67 74.6
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 1.8e-15 85.5 73 53.4
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 1.8e-15 85.5 68 54.4
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 2.4e-15 85.1 69 75.4
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 2.4e-15 85.1 46 76.1
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 2.4e-15 85.1 67 56.7
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 3.1e-15 84.7 65 56.9
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 3.1e-15 84.7 64 59.4
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 3.1e-15 84.7 68 58.8
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 4.1e-15 84.3 44 88.6
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 4.1e-15 84.3 65 60.0
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 5.3e-15 84.0 67 71.6
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 6.9e-15 83.6 68 54.4
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 6.9e-15 83.6 66 74.2
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 6.9e-15 83.6 67 52.2
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 9.0e-15 83.2 69 53.6
CDE06G2663 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 1.2e-14 82.8 66 74.2
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 1.5e-14 82.4 47 78.7
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 1.5e-14 82.4 67 70.1
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 1.5e-14 82.4 67 70.1
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 1.5e-14 82.4 67 52.2
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 1.5e-14 82.4 69 52.2
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 2.0e-14 82.0 62 58.1
Sed0010339 Sechium edule HOM05D006125 ORTHO05D007404 3.4e-14 81.3 64 59.4
TPR.G3325 Trifolium pratense HOM05D006125 ORTHO05D007404 3.4e-14 81.3 48 64.6
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 4.5e-14 80.9 67 53.7
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 4.5e-14 80.9 65 52.3
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 4.5e-14 80.9 67 53.7
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 5.9e-14 80.5 69 49.3
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 5.9e-14 80.5 69 49.3
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 5.9e-14 80.5 66 53.0
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 5.9e-14 80.5 67 53.7
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 7.7e-14 80.1 65 56.9
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 7.7e-14 80.1 47 66.0
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 1.0e-13 79.7 48 64.6
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 1.3e-13 79.3 48 64.6
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 1.7e-13 79.0 41 82.9
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 2.2e-13 78.6 40 80.0
PSO782G1324 Papaver somniferum HOM05D006125 ORTHO05D007404 2.2e-13 78.6 66 59.1
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 3.8e-13 77.8 67 64.2
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 3.8e-13 77.8 68 48.5
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 3.8e-13 77.8 66 47.0
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 3.8e-13 77.8 48 60.4
BolC2t09694H Brassica oleracea HOM05D006125 ORTHO05D007404 5.0e-13 77.4 44 77.3
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 1.1e-12 76.3 39 84.6
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 1.4e-12 75.9 42 71.4
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 1.4e-12 75.9 44 72.7
Manes.04G101402 Manihot esculenta HOM05D006125 ORTHO05D007404 7.2e-12 73.6 68 48.5
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 7.2e-12 73.6 84 46.4
Aqoxy7G03387 Aquilegia oxysepala HOM05D006125 ORTHO05D007404 3.6e-11 71.2 47 66.0
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 3.6e-11 71.2 45 62.2
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 1.0e-10 69.7 43 69.8
GSVIVG01015983001 Vitis vinifera HOM05D006125 ORTHO05D007404 3.9e-10 67.8 41 65.9
BcaB05g25217 Brassica carinata HOM05D006125 ORTHO05D007404 1.1e-09 66.2 39 79.5
SalBow6G4114 Salvia bowleyana HOM05D006125 ORTHO05D007404 2.5e-09 65.1 39 71.8
Cfa017829 Carpinus fangiana HOM05D006125 ORTHO05D007404 3.3e-09 64.7 40 60.0
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 3.3e-09 64.7 43 58.1
Haze_20423 Corylus avellana HOM05D006125 ORTHO05D007404 4.3e-09 64.3 39 61.5
vmacro19061 Vaccinium macrocarpon HOM05D006125 ORTHO05D007404 4.3e-09 64.3 39 69.2
Peaxi162Scf00553g00539 Petunia axillaris HOM05D006125 ORTHO05D007404 5.7e-09 63.9 68 51.5
Potri.003G183501 Populus trichocarpa HOM05D006125 ORTHO05D007404 2.2e-08 62.0 44 50.0
Sabra03G0134100 Salix brachista HOM05D006125 ORTHO05D007404 8.2e-08 60.1 39 53.8
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 2.4e-07 58.5 41 51.2
SEGI_23088 Sequoiadendron giganteum HOM05D006125 ORTHO05D007404 2.4e-07 58.5 40 52.5
Potri.004G051201 Populus trichocarpa HOM05D006125 ORTHO05D007404 6.9e-07 57.0 37 54.1
BolC6t38413H Brassica oleracea HOM05D006125 ORTHO05D007404 5.9e-06 53.9 33 78.8
BNapus_Darmor_BZH_scaffold_293p00030 Brassica napus HOM05D006125 ORTHO05D007404 7.7e-06 53.5 26 88.5


User provided reference genes

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