Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g34340 Schrenkiella parvula HOM05D007449 ORTHO05D009504 9.5e-92 340.1 166 100.0
BcaB05g25191 Brassica carinata HOM05D007449 ORTHO05D009504 1.3e-77 293.1 155 89.0
Thhalv10019230m.g Eutrema salsugineum HOM05D007449 ORTHO05D009504 1.3e-77 293.1 152 92.8
BolC2t09646H Brassica oleracea HOM05D007449 ORTHO05D009504 1.7e-77 292.7 155 87.7
BraA02t07273Z Brassica rapa HOM05D007449 ORTHO05D009504 3.9e-77 291.6 155 87.7
C02p36470 Brassica napus HOM05D007449 ORTHO05D009504 6.6e-77 290.8 155 87.7
Carub.0002s2613 Capsella rubella HOM05D007449 ORTHO05D009504 1.9e-76 289.3 152 92.1
BcaC03g15880 Brassica carinata HOM05D007449 ORTHO05D009504 3.3e-76 288.5 155 87.1
A02p22730 Brassica napus HOM05D007449 ORTHO05D009504 3.3e-76 288.5 155 87.1
AT1G79260 Arabidopsis thaliana HOM05D007449 ORTHO05D009504 8.9e-74 280.4 152 88.8
AL2G39860 Arabidopsis lyrata HOM05D007449 ORTHO05D009504 7.0e-71 270.8 151 88.1
THA.LOC104812400 Tarenaya hassleriana HOM05D007449 ORTHO05D009504 2.0e-65 252.7 153 77.8
Aa31LG4G1730 Aethionema arabicum HOM05D007449 ORTHO05D009504 9.2e-63 243.8 171 69.6
GSVIVG01036691001 Vitis vinifera HOM05D007449 ORTHO05D009504 2.7e-62 242.3 150 77.3
Nn1g09860 Nelumbo nucifera HOM05D007449 ORTHO05D009504 1.0e-61 240.4 150 76.0
RcHm_v2.0_Chr5g0022981 Rosa chinensis HOM05D007449 ORTHO05D009504 1.1e-60 236.9 151 73.5
SEGI_20644 Sequoiadendron giganteum HOM05D007449 ORTHO05D009504 1.1e-60 236.9 149 71.8
FvH4_3g13790 Fragaria vesca HOM05D007449 ORTHO05D009504 2.5e-60 235.7 154 72.1
FAN21G0170 Fragaria x ananassa HOM05D007449 ORTHO05D009504 2.5e-60 235.7 154 72.1
CsaV3_6G013330 Cucumis sativus L. HOM05D007449 ORTHO05D009504 4.3e-60 235.0 148 76.4
MELO3C019608.2 Cucumis melo HOM05D007449 ORTHO05D009504 1.2e-59 233.4 154 72.7
CDE02G1458 Ceratophyllum demersum HOM05D001125 ORTHO05D003189 1.6e-59 233.0 155 72.3
Hma1.2p1_1417F.1_g282110 Hydrangea macrophylla HOM05D007449 ORTHO05D009504 3.6e-59 231.9 151 73.5
Sed0001463 Sechium edule HOM05D007449 ORTHO05D009504 4.7e-59 231.5 154 74.0
Atru.chr1.9 Acer truncatum HOM05D007449 ORTHO05D009504 6.2e-59 231.1 148 75.0
FAN11G1945 Fragaria x ananassa HOM05D007449 ORTHO05D009504 8.1e-59 230.7 155 71.6
Manes.16G050159 Manihot esculenta HOM05D007449 ORTHO05D009504 1.1e-58 230.3 154 74.7
HPP92_008133 Vanilla planifolia HOM05D007449 ORTHO05D009504 1.1e-58 230.3 150 74.0
HPP92_008185 Vanilla planifolia HOM05D007449 ORTHO05D009504 1.8e-58 229.6 150 73.3
Prupe.4G124700 Prunus persica HOM05D007449 ORTHO05D009504 2.4e-58 229.2 153 71.2
ClCG02G018850 Citrullus lanatus HOM05D007449 ORTHO05D009504 3.1e-58 228.8 149 75.2
MD05G1240900 Malus domestica HOM05D007449 ORTHO05D009504 8.9e-58 227.3 156 70.5
COL.COLO4_32270 Corchorus olitorius HOM05D007449 ORTHO05D009504 1.2e-57 226.9 157 68.8
Glyma.15G266900 Glycine max HOM05D007449 ORTHO05D009504 1.2e-57 226.9 154 72.7
Sabra10G0135300 Salix brachista HOM05D007449 ORTHO05D009504 1.2e-57 226.9 152 73.7
Potri.010G175600 Populus trichocarpa HOM05D007449 ORTHO05D009504 2.0e-57 226.1 152 72.4
FAN16G1652 Fragaria x ananassa HOM05D007449 ORTHO05D009504 2.6e-57 225.7 155 70.3
MBI02_g42634_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 3.4e-57 225.3 148 73.0
Ciclev10006094m.g Citrus clementina HOM05D007449 ORTHO05D009504 4.4e-57 224.9 153 73.2
Aqoxy5G02136 Aquilegia oxysepala HOM05D007449 ORTHO05D009504 2.2e-56 222.6 155 68.4
Dinv42450 Davidia involucrata HOM05D007449 ORTHO05D009504 2.2e-56 222.6 155 70.3
CSS0049228 Camellia sinensis var. sinensis HOM05D007449 ORTHO05D009504 4.9e-56 221.5 149 70.5
Gohir.A13G127500 Gossypium hirsutum HOM05D007449 ORTHO05D009504 4.9e-56 221.5 154 69.5
Glyma.08G160000 Glycine max HOM05D007449 ORTHO05D009504 8.4e-56 220.7 154 70.8
Os01g0679600 Oryza sativa ssp. japonica HOM05D007449 ORTHO05D009504 8.4e-56 220.7 155 67.7
AagrBONN_evm.TU.Sc2ySwM_362.2319 Anthoceros agrestis HOM05D007449 ORTHO05D009504 1.1e-55 220.3 149 69.8
Gohir.D13G131200 Gossypium hirsutum HOM05D007449 ORTHO05D009504 1.4e-55 219.9 154 68.8
TAR629G0115 Trochodendron aralioides HOM05D007449 ORTHO05D009504 1.9e-55 219.5 185 60.0
ECA236G3627 Erigeron canadensis HOM05D007449 ORTHO05D009504 2.4e-55 219.2 152 69.7
CANSAT56G2387 Cannabis sativa HOM05D007449 ORTHO05D009504 3.2e-55 218.8 149 70.5
Psat6g047080 Pisum sativum HOM05D007449 ORTHO05D009504 4.2e-55 218.4 151 72.2
Lalb_Chr01g0015631 Lupinus albus HOM05D007449 ORTHO05D009504 5.4e-55 218.0 155 70.3
Duzib213G0878 Durio zibethinus HOM05D007449 ORTHO05D009504 9.3e-55 217.2 150 70.0
Gorai.013G147200 Gossypium raimondii HOM05D007449 ORTHO05D009504 9.3e-55 217.2 154 68.2
Zm00001eb156770 Zea mays HOM05D007449 ORTHO05D009504 1.2e-54 216.9 148 68.2
Migut.H01650 Erythranthe guttata HOM05D007449 ORTHO05D009504 2.1e-54 216.1 162 66.0
Lsat_1_v5_gn_7_111001 Lactuca sativa HOM05D007449 ORTHO05D009504 2.1e-54 216.1 149 69.8
arahy.Tifrunner.gnm1.ann1.4RN51I Arachis hypogaea HOM05D007449 ORTHO05D009504 2.7e-54 215.7 153 70.6
arahy.Tifrunner.gnm1.ann1.VWXD6N Arachis hypogaea HOM05D007449 ORTHO05D009504 2.7e-54 215.7 153 70.6
Cfa017774 Carpinus fangiana HOM05D007449 ORTHO05D009504 2.7e-54 215.7 155 67.7
CiPaw.15G111100 Carya illinoinensis HOM05D007449 ORTHO05D009504 2.7e-54 215.7 153 67.3
HanXRQChr11g0335831 Helianthus annuus HOM05D007449 ORTHO05D009504 2.7e-54 215.7 149 69.1
Medtr1g046590 Medicago truncatula HOM05D007449 ORTHO05D009504 6.0e-54 214.5 151 72.2
SGA_v2.0_scaffold49G18211 Striga asiatica HOM05D007449 ORTHO05D009504 1.7e-53 213.0 149 69.1
MSTRG.13092 Avicennia marina HOM05D007449 ORTHO05D009504 3.0e-53 212.2 160 64.4
Nitab4.5_0005124g0020 Nicotiana tabacum HOM05D007449 ORTHO05D009504 3.9e-53 211.8 154 67.5
Nitab4.5_0006598g0010 Nicotiana tabacum HOM05D007449 ORTHO05D009504 8.7e-53 210.7 154 67.5
PGSC0003DMG400013314 Solanum tuberosum HOM05D007449 ORTHO05D009504 2.5e-52 209.1 149 68.5
CAN.G222.124 Capsicum annuum HOM05D007449 ORTHO05D009504 3.3e-52 208.8 149 69.1
Rhsim10G0133000 Rhododendron simsii HOM05D007449 ORTHO05D009504 4.3e-52 208.4 193 57.5
Solyc11g011610.2 Solanum lycopersicum HOM05D007449 ORTHO05D009504 7.3e-52 207.6 149 67.8
ATR0109G018 Amborella trichopoda HOM05D007449 ORTHO05D009504 9.6e-52 207.2 151 66.9
Sopen11g006460 Solanum pennellii HOM05D007449 ORTHO05D009504 1.6e-51 206.5 149 67.8
Solyc11g011620.3 Solanum lycopersicum HOM05D007449 ORTHO05D009504 2.8e-51 205.7 149 67.1
TWI38G0722 Tripterygium wilfordii HOM05D007449 ORTHO05D009504 3.6e-51 205.3 160 63.1
TWI38G2117 Tripterygium wilfordii HOM05D007449 ORTHO05D009504 3.6e-51 205.3 160 63.1
Cc08_g13080 Coffea canephora HOM05D007449 ORTHO05D009504 6.2e-51 204.5 154 66.2
TPR.G11303 Trifolium pratense HOM05D007449 ORTHO05D009504 6.2e-51 204.5 148 68.9
Nitab4.5_0001438g0030 Nicotiana tabacum HOM05D007449 ORTHO05D009504 8.1e-51 204.1 154 64.9
Peaxi162Scf00124g01733 Petunia axillaris HOM05D007449 ORTHO05D009504 8.1e-51 204.1 149 66.4
PGR031G0327 Punica granatum HOM05D007449 ORTHO05D009504 1.8e-50 203.0 155 66.5
SMO364G0724 Selaginella moellendorffii HOM05D007449 ORTHO05D009504 6.9e-50 201.1 153 63.4
Oeu002792.1 Olea europaea HOM05D007449 ORTHO05D009775 3.4e-49 198.7 153 64.1
Mapoly0054s0111 Marchantia polymorpha HOM05D007449 ORTHO05D009504 4.4e-49 198.4 152 62.5
vmacro12790 Vaccinium macrocarpon HOM05D007449 ORTHO05D009504 4.9e-48 194.9 223 49.3
Phvul.005G043600 Phaseolus vulgaris HOM05D007449 ORTHO05D009504 4.2e-47 191.8 155 63.9
Eucgr.F04482 Eucalyptus grandis HOM05D007449 ORTHO05D009504 2.7e-46 189.1 146 65.1
Actinidia33338 Actinidia chinensis HOM05D007449 ORTHO05D009504 6.6e-45 184.5 129 69.0
Pp3c6_12570 Physcomitrium patens HOM05D007449 ORTHO05D009504 4.3e-44 181.8 115 71.3
arahy.Tifrunner.gnm1.ann1.FIRH26 Arachis hypogaea HOM05D007449 ORTHO05D009504 1.3e-43 180.3 124 71.8
QL04p096242 Quercus lobata HOM05D007449 ORTHO05D009504 2.4e-42 176.0 114 73.7
QL04p096050 Quercus lobata HOM05D007449 ORTHO05D009504 5.3e-42 174.9 113 73.5
Haze_18462 Corylus avellana HOM05D007449 ORTHO05D009504 2.2e-40 169.5 113 71.7
Nitab4.5_0009898g0010 Nicotiana tabacum HOM05D007449 ORTHO05D009504 1.1e-39 167.2 148 59.5
MBI02_g17887_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 1.3e-35 153.7 148 57.4
FAN25G3406 Fragaria x ananassa HOM05D007449 ORTHO05D009504 2.8e-35 152.5 104 71.2
Ca_03327_v3 Cicer arietinum L. HOM05D007449 ORTHO05D009504 3.7e-35 152.1 106 70.8
DCAR_013701 Daucus carota HOM05D007449 ORTHO05D009504 4.8e-35 151.8 89 79.8
Lj2A6T27 Lonicera japonica HOM05D007449 ORTHO05D009504 2.6e-33 146.0 90 74.4
Aa31LG4G1740 Aethionema arabicum HOM05D007449 ORTHO05D009504 1.5e-28 130.2 152 44.1
Nitab4.5_0001650g0100 Nicotiana tabacum HOM05D000057 ORTHO05D000021 3.5e-22 109.0 75 68.0
Nitab4.5_0007284g0070 Nicotiana tabacum HOM05D000057 ORTHO05D000021 7.7e-17 91.3 95 52.6
TPR.G35695 Trifolium pratense HOM05D000290 ORTHO05D044376 1.7e-11 73.6 61 60.7
Glyma.14G034600 Glycine max HOM05D007449 ORTHO05D009504 1.2e-09 67.4 45 64.4
MBI02_g30541_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 1.2e-09 67.4 77 53.2
Gohir.D03G088000 Gossypium hirsutum HOM05D007449 ORTHO05D000032 1.0e-08 64.3 53 58.5


User provided reference genes

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