Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 0.0e+00 1135.2 615 100.0
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 1.4e-289 999.2 613 87.9
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 3.1e-289 998.0 605 89.8
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 3.1e-289 998.0 605 89.8
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 2.0e-288 995.3 616 88.5
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 1.7e-287 992.3 605 89.8
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 1.7e-287 992.3 605 89.8
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 5.5e-286 987.3 613 87.3
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 1.6e-285 985.7 593 90.4
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 7.6e-280 966.8 618 85.3
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 1.3e-276 956.1 616 85.1
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 3.3e-275 951.4 587 86.5
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 4.1e-273 944.5 547 92.0
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 1.1e-233 813.5 618 73.9
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 7.3e-230 800.8 463 91.8
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 1.7e-210 736.5 618 64.2
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 2.9e-210 735.7 620 64.2
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 5.4e-209 731.5 629 62.3
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 3.5e-208 728.8 623 63.1
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 4.6e-208 728.4 614 63.2
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 1.7e-207 726.5 628 61.6
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 3.0e-207 725.7 614 63.2
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 8.6e-207 724.2 593 65.3
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 3.3e-206 722.2 628 61.6
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 1.6e-205 719.9 624 63.0
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 2.8e-205 719.2 624 62.8
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 6.2e-205 718.0 622 61.7
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 8.1e-205 717.6 596 63.4
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 5.8e-203 711.4 626 61.0
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 6.4e-202 708.0 623 61.5
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 1.1e-201 707.2 620 61.6
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.4e-201 706.8 613 61.5
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 5.4e-201 704.9 624 63.9
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 9.2e-201 704.1 624 62.5
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 2.7e-200 702.6 627 61.7
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 4.6e-200 701.8 618 63.9
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 7.8e-200 701.0 621 60.7
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 3.0e-199 699.1 622 60.6
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 6.6e-199 698.0 618 62.6
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 7.3e-198 694.5 620 58.7
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 7.3e-198 694.5 622 60.3
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 7.3e-198 694.5 613 60.0
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 7.3e-198 694.5 593 60.7
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 1.2e-197 693.7 593 60.9
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 3.6e-197 692.2 619 60.6
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 4.7e-197 691.8 593 60.4
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 4.7e-197 691.8 621 58.6
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 1.8e-196 689.9 612 60.0
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 4.0e-196 688.7 619 59.8
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 6.9e-196 688.0 613 59.5
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 1.2e-195 687.2 612 60.8
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.2e-195 687.2 594 60.9
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.5e-195 686.8 617 59.5
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 2.0e-195 686.4 616 60.6
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 2.0e-195 686.4 614 60.7
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 2.0e-195 686.4 621 61.2
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 2.6e-195 686.0 621 60.7
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 4.4e-195 685.3 626 60.1
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 7.6e-195 684.5 618 61.3
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 1.7e-194 683.3 614 59.3
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 2.2e-194 682.9 617 63.2
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.4e-193 680.2 620 58.9
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 5.4e-193 678.3 609 59.1
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 1.2e-192 677.2 596 60.7
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 6.0e-192 674.9 613 59.1
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 1.3e-191 673.7 626 59.9
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.3e-191 673.7 630 57.9
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.3e-191 673.7 630 57.9
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 6.6e-191 671.4 613 57.9
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 6.6e-191 671.4 630 57.9
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.5e-190 669.5 624 60.9
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 5.6e-190 668.3 624 61.7
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 9.6e-190 667.5 634 56.8
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.1e-189 666.4 624 62.2
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 1.8e-188 663.3 613 58.9
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 7.6e-187 657.9 598 60.0
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 7.6e-187 657.9 589 57.9
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 1.3e-186 657.1 595 60.0
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 1.3e-186 657.1 622 57.2
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 1.7e-186 656.8 626 58.6
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 4.2e-185 652.1 620 56.9
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 5.1e-183 645.2 622 56.3
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 1.6e-181 640.2 626 58.5
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 2.4e-180 636.3 624 57.9
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 8.4e-178 627.9 619 56.9
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 5.1e-175 618.6 624 55.0
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 3.1e-172 609.4 599 54.6
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 2.5e-169 599.7 626 53.2
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 3.2e-169 599.4 630 53.0
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 3.5e-168 595.9 596 54.4
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.0e-167 594.3 529 58.6
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.8e-167 593.6 619 54.6
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 2.4e-164 583.2 616 52.4
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 2.6e-163 579.7 660 50.5
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 3.4e-163 579.3 629 52.8
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 1.0e-162 577.8 593 53.0
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 6.7e-159 565.1 603 50.4
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 3.1e-156 556.2 707 46.8
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.9e-145 520.4 619 47.8
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 8.0e-144 515.0 622 50.8
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 7.7e-139 498.4 626 48.2
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 4.0e-135 486.1 447 57.3
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 6.5e-130 468.8 376 68.6
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 1.8e-124 450.7 632 41.0
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 1.8e-119 434.1 554 48.0
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 1.4e-116 424.5 644 41.8
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 5.0e-114 416.0 608 41.0
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 6.6e-114 415.6 386 55.4
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 3.1e-103 380.2 385 51.2
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 6.0e-99 365.9 595 37.1
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 1.9e-89 334.3 292 60.3
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.6e-88 331.3 388 49.7
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 4.9e-85 319.7 266 59.0
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 6.4e-77 292.7 336 49.4
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 2.4e-68 264.2 235 61.7
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 3.5e-67 260.4 241 59.8
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 5.1e-66 256.5 266 51.5
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 1.3e-64 251.9 227 53.7
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 9.9e-62 242.3 165 72.7
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 2.2e-61 241.1 166 69.9
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 2.1e-56 224.6 547 32.5
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 2.8e-56 224.2 195 60.5
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 4.9e-53 213.4 239 47.7
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 2.1e-51 208.0 150 66.7
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 2.5e-49 201.1 228 50.0
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 5.0e-45 186.8 193 52.8
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 1.5e-38 165.2 172 55.8
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 5.0e-37 160.2 168 55.4
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 5.0e-37 160.2 209 46.9
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 6.5e-37 159.8 153 54.2
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 7.9e-35 152.9 118 73.7
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 3.9e-34 150.6 106 72.6
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.4e-28 132.1 179 41.9
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 7.2e-28 129.8 517 24.0
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 1.8e-26 125.2 555 25.8
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 6.7e-26 123.2 135 50.4
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 2.2e-24 118.2 71 70.4
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 7.0e-23 113.2 102 54.9
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 5.0e-21 107.1 69 88.4
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 8.5e-21 106.3 548 25.4
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 2.1e-19 101.7 70 84.3
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 6.1e-19 100.1 73 80.8
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 1.8e-18 98.6 67 83.6
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 3.0e-18 97.8 71 78.9
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 1.5e-17 95.5 64 79.7
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.4e-10 72.4 61 50.8
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 5.2e-10 70.5 51 72.5
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 2.0e-09 68.6 55 56.4
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 2.6e-09 68.2 56 57.1
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 1.8e-07 62.0 65 47.7
FvH4_6g51840 Fragaria vesca HOM05D004092 ORTHO05D016651 3.1e-07 61.2 61 52.5
FAN01G1588 Fragaria x ananassa HOM05D004092 ORTHO05D016651 3.1e-07 61.2 61 52.5
FAN24G0390 Fragaria x ananassa HOM05D004092 ORTHO05D016651 1.2e-06 59.3 58 51.7
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 1.6e-06 58.9 152 27.0
FAN14G4793 Fragaria x ananassa HOM05D004092 ORTHO05D016651 5.9e-06 57.0 44 63.6


User provided reference genes

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