Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g33810 Schrenkiella parvula HOM05D001884 ORTHO05D034048 2.8e-32 141.4 71 100.0
AT1G78780 Arabidopsis thaliana HOM05D001884 ORTHO05D001890 2.3e-23 111.7 64 84.4
Carub.0002s2561 Capsella rubella HOM05D001884 ORTHO05D001890 2.3e-23 111.7 64 84.4
A07p43990 Brassica napus HOM05D001884 ORTHO05D001890 8.9e-23 109.8 58 94.8
C03p92770 Brassica napus HOM05D001884 ORTHO05D001890 1.5e-22 109.0 58 93.1
CARHR072330 Cardamine hirsuta HOM05D001884 ORTHO05D034048 2.6e-22 108.2 57 89.5
BraA07t31906Z Brassica rapa HOM05D001884 ORTHO05D001890 4.4e-22 107.5 58 93.1
AL2G39170 Arabidopsis lyrata HOM05D001884 ORTHO05D001890 1.3e-21 105.9 58 86.2
BcaB03g16035 Brassica carinata HOM05D001884 ORTHO05D001890 2.9e-21 104.8 58 89.7
Aa31LG4G2250 Aethionema arabicum HOM05D001884 ORTHO05D001890 9.2e-20 99.8 53 86.8
PGR078G0004 Punica granatum HOM05D001884 ORTHO05D001890 5.4e-12 73.9 41 78.0
THA.LOC104812315 Tarenaya hassleriana HOM05D001884 ORTHO05D001890 7.1e-12 73.6 63 57.1
Aqoxy1G02008 Aquilegia oxysepala HOM05D001884 ORTHO05D001890 1.7e-10 68.9 53 54.7
PGR031G3241 Punica granatum HOM05D001884 ORTHO05D001890 1.7e-10 68.9 41 78.0
COL.COLO4_17534 Corchorus olitorius HOM05D001884 ORTHO05D001890 3.0e-10 68.2 51 56.9
BcaC08g47456 Brassica carinata HOM05D001884 ORTHO05D001890 1.5e-09 65.9 107 43.9
AUR62037556 Chenopodium quinoa HOM05D001884 ORTHO05D001890 1.5e-09 65.9 52 59.6
Ciclev10024222m.g Citrus clementina HOM05D001884 ORTHO05D001890 5.6e-09 63.9 42 69.0
Potri.001G389800 Populus trichocarpa HOM05D001884 ORTHO05D001890 5.6e-09 63.9 42 61.9
CAN.G809.49 Capsicum annuum HOM05D001884 ORTHO05D001890 7.3e-09 63.5 60 46.7
Nitab4.5_0007851g0010 Nicotiana tabacum HOM05D001884 ORTHO05D001890 7.3e-09 63.5 60 48.3
AUR62019587 Chenopodium quinoa HOM05D001884 ORTHO05D001890 9.5e-09 63.2 52 57.7
Thecc.08G145700 Theobroma cacao HOM05D001884 ORTHO05D001890 9.5e-09 63.2 45 62.2
EL10Ac4g08360 Beta vulgaris HOM05D001884 ORTHO05D001890 1.2e-08 62.8 42 66.7
CiPaw.16G017100 Carya illinoinensis HOM05D001884 ORTHO05D001890 1.2e-08 62.8 57 50.9
Oeu031027.1 Olea europaea HOM05D001884 ORTHO05D001890 1.6e-08 62.4 42 64.3
SGA_v2.0_scaffold48G17950 Striga asiatica HOM05D001884 ORTHO05D001890 1.6e-08 62.4 48 54.2
Actinidia18803 Actinidia chinensis HOM05D001884 ORTHO05D001890 2.1e-08 62.0 50 60.0
ECA236G1119 Erigeron canadensis HOM05D001884 ORTHO05D001890 2.1e-08 62.0 50 50.0
Glyma.13G269100 Glycine max HOM05D001884 ORTHO05D001890 2.1e-08 62.0 40 67.5
Manes.18G088600 Manihot esculenta HOM05D001884 ORTHO05D001890 2.1e-08 62.0 45 62.2
MSTRG.25328 Avicennia marina HOM05D001884 ORTHO05D001890 2.8e-08 61.6 53 49.1
Dinv15001 Davidia involucrata HOM05D001884 ORTHO05D001890 2.8e-08 61.6 45 57.8
Glyma.12G230500 Glycine max HOM05D001884 ORTHO05D001890 2.8e-08 61.6 40 67.5
MBI06_g36542_MAGBIO Magnolia biondii HOM05D001884 ORTHO05D001890 2.8e-08 61.6 48 58.3
Dinv15002 Davidia involucrata HOM05D001884 ORTHO05D001890 3.6e-08 61.2 50 52.0
Thhalv10019070m.g Eutrema salsugineum HOM05D001884 ORTHO05D001890 3.6e-08 61.2 51 56.9
Hma1.2p1_0107F.1_g051510 Hydrangea macrophylla HOM05D001884 ORTHO05D001890 3.6e-08 61.2 45 57.8
Manes.18G090301 Manihot esculenta HOM05D001884 ORTHO05D001890 3.6e-08 61.2 45 62.2
TPR.G16069 Trifolium pratense HOM05D001884 ORTHO05D001890 3.6e-08 61.2 40 70.0
VMungo1080G0136 Vigna mungo HOM05D001884 ORTHO05D001890 3.6e-08 61.2 40 67.5
C06p52670 Brassica napus HOM05D001884 ORTHO05D001890 4.7e-08 60.8 45 62.2
CANSAT78G0214 Cannabis sativa HOM05D001884 ORTHO05D001890 4.7e-08 60.8 53 49.1
Duzib116G0270 Durio zibethinus HOM05D001884 ORTHO05D001890 4.7e-08 60.8 45 62.2
Gohir.A02G066300 Gossypium hirsutum HOM05D001884 ORTHO05D001890 4.7e-08 60.8 48 58.3
Gorai.005G081400 Gossypium raimondii HOM05D001884 ORTHO05D001890 4.7e-08 60.8 48 58.3
Peaxi162Scf00000g00682 Petunia axillaris HOM05D001884 ORTHO05D001890 4.7e-08 60.8 53 50.9
Potri.011G108900 Populus trichocarpa HOM05D001884 ORTHO05D001890 4.7e-08 60.8 56 50.0
Cpa.g.sc77.21 Carica papaya HOM05D001884 ORTHO05D001890 6.2e-08 60.5 37 64.9
Cc05_g11000 Coffea canephora HOM05D001884 ORTHO05D001890 6.2e-08 60.5 40 65.0
Gohir.A01G053500 Gossypium hirsutum HOM05D001884 ORTHO05D001890 6.2e-08 60.5 53 50.9
HanXRQChr11g0331021 Helianthus annuus HOM05D001884 ORTHO05D001890 6.2e-08 60.5 51 54.9
Lj7A365T39 Lonicera japonica HOM05D001884 ORTHO05D001890 6.2e-08 60.5 45 55.6
Medtr8g058350 Medicago truncatula HOM05D001884 ORTHO05D001890 6.2e-08 60.5 49 57.1
Phvul.005G081500 Phaseolus vulgaris HOM05D001884 ORTHO05D001890 6.2e-08 60.5 40 65.0
Thecc.07G118000 Theobroma cacao HOM05D001884 ORTHO05D034048 6.2e-08 60.5 43 65.1
Ciclev10023544m.g Citrus clementina HOM05D001884 ORTHO05D001890 8.1e-08 60.1 42 66.7
BolC6t40285H Brassica oleracea HOM05D001884 ORTHO05D001890 1.1e-07 59.7 99 44.4
MBI06_g15764_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 1.1e-07 59.7 37 67.6
Medtr2g076010 Medicago truncatula HOM05D001884 ORTHO05D001890 1.1e-07 59.7 48 60.4
CiPaw.16G017000 Carya illinoinensis HOM05D001884 ORTHO05D001890 1.4e-07 59.3 57 49.1
Ciclev10021966m.g Citrus clementina HOM05D001884 ORTHO05D001890 1.4e-07 59.3 54 55.6
Gohir.A01G053600 Gossypium hirsutum HOM05D001884 ORTHO05D001890 1.4e-07 59.3 53 49.1
Sp5g33800 Schrenkiella parvula HOM05D001884 ORTHO05D001890 1.4e-07 59.3 45 60.0
SGA_v2.0_scaffold73G24400 Striga asiatica HOM05D001884 ORTHO05D001890 1.4e-07 59.3 44 61.4
Haze_09317 Corylus avellana HOM05D001884 ORTHO05D001890 1.8e-07 58.9 44 54.5
Migut.C01034 Erythranthe guttata HOM05D001884 ORTHO05D001890 1.8e-07 58.9 52 53.8
Gohir.D02G072201 Gossypium hirsutum HOM05D001884 ORTHO05D001890 1.8e-07 58.9 48 56.2
Lalb_Chr25g0285801 Lupinus albus HOM05D001884 ORTHO05D001890 1.8e-07 58.9 60 51.7
Medtr2g076070 Medicago truncatula HOM05D001884 ORTHO05D001890 1.8e-07 58.9 40 67.5
Potri.001G389400 Populus trichocarpa HOM05D001884 ORTHO05D001890 1.8e-07 58.9 37 64.9
QL02p025012 Quercus lobata HOM05D001884 ORTHO05D001890 1.8e-07 58.9 45 62.2
TPR.G16067 Trifolium pratense HOM05D001884 ORTHO05D001890 1.8e-07 58.9 40 67.5
Zm00001eb127300 Zea mays HOM05D001884 ORTHO05D001890 1.8e-07 58.9 53 49.1
CSS0031515 Camellia sinensis var. sinensis HOM05D001884 ORTHO05D001890 2.4e-07 58.5 46 52.2
ClCG08G006500 Citrullus lanatus HOM05D001884 ORTHO05D001890 2.4e-07 58.5 45 57.8
MELO3C008404.2 Cucumis melo HOM05D001884 ORTHO05D001890 2.4e-07 58.5 45 57.8
Dinv25816 Davidia involucrata HOM05D001884 ORTHO05D001890 2.4e-07 58.5 53 52.8
Actinidia01139 Actinidia chinensis HOM05D001884 ORTHO05D001890 3.1e-07 58.2 53 50.9
MSTRG.14966 Avicennia marina HOM05D001884 ORTHO05D001890 3.1e-07 58.2 40 62.5
CSS0044365 Camellia sinensis var. sinensis HOM05D001884 ORTHO05D001890 3.1e-07 58.2 46 52.2
CsaV3_6G030910 Cucumis sativus L. HOM05D001884 ORTHO05D001890 3.1e-07 58.2 45 57.8
arahy.Tifrunner.gnm1.ann1.FJG18T Arachis hypogaea HOM05D001884 ORTHO05D001890 4.0e-07 57.8 37 67.6
arahy.Tifrunner.gnm1.ann1.P2KAM9 Arachis hypogaea HOM05D001884 ORTHO05D001890 4.0e-07 57.8 37 67.6
CSS0018843 Camellia sinensis var. sinensis HOM05D001884 ORTHO05D001890 4.0e-07 57.8 45 57.8
Cfa018353 Carpinus fangiana HOM05D001884 ORTHO05D001890 4.0e-07 57.8 45 55.6
Duzib213G0216 Durio zibethinus HOM05D001884 ORTHO05D001890 4.0e-07 57.8 39 64.1
Glyma.06G123800 Glycine max HOM05D001884 ORTHO05D001890 4.0e-07 57.8 53 47.2
GSVIVG01010045001 Vitis vinifera HOM05D001884 ORTHO05D001890 4.0e-07 57.8 53 49.1
CSS0010745 Camellia sinensis var. sinensis HOM05D001884 ORTHO05D001890 5.2e-07 57.4 46 52.2
CSS0013345 Camellia sinensis var. sinensis HOM05D001884 ORTHO05D001890 5.2e-07 57.4 46 52.2
CSS0023249 Camellia sinensis var. sinensis HOM05D001884 ORTHO05D001890 5.2e-07 57.4 45 55.6
COL.COLO4_17531 Corchorus olitorius HOM05D001884 ORTHO05D001890 5.2e-07 57.4 45 53.3
Dinv41116 Davidia involucrata HOM05D001884 ORTHO05D001890 5.2e-07 57.4 45 55.6
Duzib213G0777 Durio zibethinus HOM05D001884 ORTHO05D001890 5.2e-07 57.4 39 64.1
Eucgr.F02733 Eucalyptus grandis HOM05D001884 ORTHO05D001890 5.2e-07 57.4 45 53.3
Gohir.D01G042706 Gossypium hirsutum HOM05D001884 ORTHO05D001890 5.2e-07 57.4 53 49.1
Gorai.002G053900 Gossypium raimondii HOM05D001884 ORTHO05D001890 5.2e-07 57.4 53 49.1
HanXRQChr04g0109391 Helianthus annuus HOM05D001884 ORTHO05D001890 5.2e-07 57.4 45 55.6
TAR625G1182 Trochodendron aralioides HOM05D001884 ORTHO05D001890 5.2e-07 57.4 47 51.1
CSS0042211 Camellia sinensis var. sinensis HOM05D001884 ORTHO05D001890 6.8e-07 57.0 63 46.0
Gohir.D01G042708 Gossypium hirsutum HOM05D001884 ORTHO05D001890 6.8e-07 57.0 53 47.2
Peaxi162Scf00263g00515 Petunia axillaris HOM05D001884 ORTHO05D001890 6.8e-07 57.0 53 50.9
Peaxi162Scf00263g00516 Petunia axillaris HOM05D001884 ORTHO05D001890 6.8e-07 57.0 53 50.9
Potri.005G188300 Populus trichocarpa HOM05D001884 ORTHO05D001890 6.8e-07 57.0 45 57.8
TWI34G0401 Tripterygium wilfordii HOM05D001884 ORTHO05D001890 6.8e-07 57.0 57 45.6
TAR628G0105 Trochodendron aralioides HOM05D001884 ORTHO05D001890 6.8e-07 57.0 62 48.4
CiPaw.12G113300 Carya illinoinensis HOM05D001884 ORTHO05D001890 8.9e-07 56.6 41 58.5
Duzib093G2258 Durio zibethinus HOM05D001884 ORTHO05D001890 8.9e-07 56.6 68 47.1
Prupe.8G020800 Prunus persica HOM05D001884 ORTHO05D001890 8.9e-07 56.6 46 54.3
Ca_03958_v3 Cicer arietinum L. HOM05D001884 ORTHO05D001890 1.2e-06 56.2 37 67.6
Haze_17706 Corylus avellana HOM05D001884 ORTHO05D001890 1.2e-06 56.2 45 53.3
Lsat_1_v5_gn_1_7361 Lactuca sativa HOM05D001884 ORTHO05D001890 1.2e-06 56.2 45 53.3
Psat5g237200 Pisum sativum HOM05D001884 ORTHO05D001890 1.2e-06 56.2 37 67.6
RcHm_v2.0_Chr6g0276861 Rosa chinensis HOM05D001884 ORTHO05D001890 1.2e-06 56.2 45 55.6
RcHm_v2.0_Chr6g0276891 Rosa chinensis HOM05D001884 ORTHO05D001890 1.2e-06 56.2 45 55.6
Atru.chr13.1714 Acer truncatum HOM05D001884 ORTHO05D001890 1.5e-06 55.8 53 49.1
arahy.Tifrunner.gnm1.ann1.88MUGQ Arachis hypogaea HOM05D001884 ORTHO05D001890 1.5e-06 55.8 49 51.0
CSS0017648 Camellia sinensis var. sinensis HOM05D001884 ORTHO05D001890 1.5e-06 55.8 45 55.6
DCAR_030716 Daucus carota HOM05D001884 ORTHO05D001890 1.5e-06 55.8 45 51.1
Glyma.06G123700 Glycine max HOM05D001884 ORTHO05D001890 1.5e-06 55.8 53 50.9
MBI06_g15766_MAGBIO Magnolia biondii HOM05D001884 ORTHO05D001890 1.5e-06 55.8 48 52.1
Prupe.8G020900 Prunus persica HOM05D001884 ORTHO05D001890 1.5e-06 55.8 53 49.1
QL02p025002 Quercus lobata HOM05D001884 ORTHO05D001890 1.5e-06 55.8 45 60.0
QL08p026152 Quercus lobata HOM05D001884 ORTHO05D001890 1.5e-06 55.8 42 57.1
Hund26718 Selenicereus undatus HOM05D001884 ORTHO05D001890 1.5e-06 55.8 45 53.3
PGSC0003DMG400024843 Solanum tuberosum HOM05D001884 ORTHO05D001890 1.5e-06 55.8 53 49.1
Thecc.07G118100 Theobroma cacao HOM05D001884 ORTHO05D001890 1.5e-06 55.8 37 62.2
TAR628G1482 Trochodendron aralioides HOM05D001884 ORTHO05D001890 1.5e-06 55.8 45 55.6
arahy.Tifrunner.gnm1.ann1.81H9V0 Arachis hypogaea HOM05D001884 ORTHO05D001890 2.0e-06 55.5 37 59.5
arahy.Tifrunner.gnm1.ann1.NV60S8 Arachis hypogaea HOM05D001884 ORTHO05D001890 2.0e-06 55.5 37 59.5
CSS0014873 Camellia sinensis var. sinensis HOM05D001884 ORTHO05D001890 2.0e-06 55.5 39 61.5
CAN.G744.5 Capsicum annuum HOM05D001884 ORTHO05D001890 2.0e-06 55.5 45 57.8
Cpa.g.sc77.18 Carica papaya HOM05D001884 ORTHO05D001890 2.0e-06 55.5 44 52.3
Migut.M00718 Erythranthe guttata HOM05D001884 ORTHO05D001890 2.0e-06 55.5 39 56.4
Eucgr.F02732 Eucalyptus grandis HOM05D001884 ORTHO05D001890 2.0e-06 55.5 53 49.1
Lj4C692T6 Lonicera japonica HOM05D001884 ORTHO05D001890 2.0e-06 55.5 45 53.3
Potri.005G188400 Populus trichocarpa HOM05D001884 ORTHO05D001890 2.0e-06 55.5 45 55.6
Sabra11G0096400 Salix brachista HOM05D001884 ORTHO05D001890 2.0e-06 55.5 56 48.2
PGSC0003DMG400015388 Solanum tuberosum HOM05D001884 ORTHO05D001890 2.0e-06 55.5 54 44.4
DCAR_021125 Daucus carota HOM05D001884 ORTHO05D001890 2.6e-06 55.1 57 49.1
Lalb_Chr01g0006841 Lupinus albus HOM05D001884 ORTHO05D001890 2.6e-06 55.1 45 53.3
PSO170G1735 Papaver somniferum HOM05D001884 ORTHO05D001890 2.6e-06 55.1 45 48.9
Prupe.8G021200 Prunus persica HOM05D001884 ORTHO05D001890 2.6e-06 55.1 45 55.6
Sc04g0007990 Simmondsia chinensis HOM05D001884 ORTHO05D001890 2.6e-06 55.1 39 53.8
arahy.Tifrunner.gnm1.ann1.MXX1LP Arachis hypogaea HOM05D001884 ORTHO05D001890 3.4e-06 54.7 47 53.2
Nitab4.5_0018289g0010 Nicotiana tabacum HOM05D001884 ORTHO05D001890 3.4e-06 54.7 53 47.2
Rhsim04G0026800 Rhododendron simsii HOM05D001884 ORTHO05D001890 3.4e-06 54.7 39 61.5
Rhsim04G0026900 Rhododendron simsii HOM05D001884 ORTHO05D001890 3.4e-06 54.7 39 61.5
SalBow7G0520 Salvia bowleyana HOM05D001884 ORTHO05D001890 3.4e-06 54.7 53 43.4
SalBow7G1431 Salvia bowleyana HOM05D001884 ORTHO05D001890 3.4e-06 54.7 53 43.4
TAR628G0814 Trochodendron aralioides HOM05D001884 ORTHO05D001890 3.4e-06 54.7 45 57.8
TAR628G1634 Trochodendron aralioides HOM05D001884 ORTHO05D001890 3.4e-06 54.7 45 57.8
Nn1g06192 Nelumbo nucifera HOM05D001884 ORTHO05D001890 4.4e-06 54.3 57 45.6
Nn3g21126 Nelumbo nucifera HOM05D001884 ORTHO05D001890 4.4e-06 54.3 54 46.3
ATR1136G191 Amborella trichopoda HOM05D001884 ORTHO05D001890 5.8e-06 53.9 45 53.3
CiPaw.15G020900 Carya illinoinensis HOM05D001884 ORTHO05D001890 5.8e-06 53.9 47 51.1
Gohir.1Z049314 Gossypium hirsutum HOM05D001884 ORTHO05D001890 5.8e-06 53.9 39 59.0
Gohir.D03G061400 Gossypium hirsutum HOM05D001884 ORTHO05D001890 5.8e-06 53.9 39 59.0
Gorai.013G105200 Gossypium raimondii HOM05D001884 ORTHO05D001890 5.8e-06 53.9 39 59.0
Nitab4.5_0010768g0030 Nicotiana tabacum HOM05D001884 ORTHO05D001890 5.8e-06 53.9 53 47.2
Sopen12g006090 Solanum pennellii HOM05D001884 ORTHO05D001890 5.8e-06 53.9 60 41.7
Thecc.08G145600 Theobroma cacao HOM05D001884 ORTHO05D001890 5.8e-06 53.9 57 45.6
CARHR072320 Cardamine hirsuta HOM05D001884 ORTHO05D001890 7.6e-06 53.5 45 57.8
Duzib116G0211 Durio zibethinus HOM05D001884 ORTHO05D001890 7.6e-06 53.5 45 53.3
Lsat_1_v5_gn_7_102501 Lactuca sativa HOM05D001884 ORTHO05D001890 7.6e-06 53.5 51 47.1
PGR042G3199 Punica granatum HOM05D001884 ORTHO05D001890 7.6e-06 53.5 39 59.0
RcHm_v2.0_Chr6g0276851 Rosa chinensis HOM05D001884 ORTHO05D001890 7.6e-06 53.5 45 53.3
RcHm_v2.0_Chr6g0276881 Rosa chinensis HOM05D001884 ORTHO05D001890 7.6e-06 53.5 45 53.3
Solyc04g064870.3 Solanum lycopersicum HOM05D001884 ORTHO05D001890 7.6e-06 53.5 52 48.1
TWI60G0479 Tripterygium wilfordii HOM05D001884 ORTHO05D001890 7.6e-06 53.5 45 53.3
EL10Ac6g13230 Beta vulgaris HOM05D001884 ORTHO05D001890 9.9e-06 53.1 45 53.3
Cfa019557 Carpinus fangiana HOM05D001884 ORTHO05D001890 9.9e-06 53.1 58 46.6
DCAR_010700 Daucus carota HOM05D001884 ORTHO05D001890 9.9e-06 53.1 56 41.1
MD05G1017100 Malus domestica HOM05D001884 ORTHO05D001890 9.9e-06 53.1 53 49.1
PSO407G0202 Papaver somniferum HOM05D001884 ORTHO05D001890 9.9e-06 53.1 45 46.7
RcHm_v2.0_Chr6g0276811 Rosa chinensis HOM05D001884 ORTHO05D001890 9.9e-06 53.1 53 45.3
RcHm_v2.0_Chr6g0276871 Rosa chinensis HOM05D001884 ORTHO05D001890 9.9e-06 53.1 53 45.3
Sopen04g026830 Solanum pennellii HOM05D001884 ORTHO05D001890 9.9e-06 53.1 52 48.1
TWI39G0341 Tripterygium wilfordii HOM05D001884 ORTHO05D001890 9.9e-06 53.1 40 60.0


User provided reference genes

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