Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 7.0e-168 594.0 318 100.0
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 5.2e-155 551.2 318 93.1
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 2.6e-154 548.9 318 92.1
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 2.6e-154 548.9 318 92.1
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 7.5e-154 547.4 318 91.8
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 7.5e-154 547.4 318 91.8
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 2.8e-153 545.4 318 91.8
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 3.7e-153 545.0 318 91.5
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 3.1e-152 542.0 313 91.4
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 7.0e-152 540.8 318 91.2
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 9.1e-152 540.4 318 90.6
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 1.3e-150 536.6 318 90.3
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 2.3e-150 535.8 318 90.9
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 6.5e-150 534.3 318 91.2
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 1.9e-149 532.7 318 89.9
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 9.5e-149 530.4 318 89.6
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 4.3e-141 505.0 291 92.4
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 3.2e-136 488.8 318 83.0
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 5.2e-131 471.5 308 82.5
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 8.1e-124 447.6 307 80.5
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 1.1e-99 367.5 313 62.6
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 2.6e-98 362.8 309 60.5
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 9.9e-98 360.9 306 65.4
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 1.3e-97 360.5 307 60.6
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 3.8e-97 359.0 307 60.9
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 3.8e-97 359.0 307 59.9
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 4.9e-97 358.6 310 60.0
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 6.4e-97 358.2 307 59.9
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 8.4e-97 357.8 307 60.3
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 1.1e-96 357.5 308 60.4
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 1.4e-96 357.1 307 60.9
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 1.4e-96 357.1 307 58.3
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 1.4e-96 357.1 307 60.3
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 3.2e-96 355.9 307 59.3
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 3.2e-96 355.9 312 60.6
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 5.4e-96 355.1 317 65.3
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 9.3e-96 354.4 314 59.9
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 1.2e-95 354.0 307 59.6
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 2.1e-95 353.2 317 59.0
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 2.7e-95 352.8 304 59.5
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 6.0e-95 351.7 307 59.3
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 7.9e-95 351.3 306 66.3
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 1.8e-94 350.1 315 58.1
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 3.0e-94 349.4 309 58.3
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 3.9e-94 349.0 310 59.4
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 1.5e-93 347.1 306 57.2
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 1.5e-93 347.1 315 57.8
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 1.5e-93 347.1 307 57.0
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 1.9e-93 346.7 310 58.7
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 5.6e-93 345.1 306 56.5
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 1.3e-92 344.0 306 56.9
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 1.3e-92 344.0 315 57.8
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 1.3e-92 344.0 306 57.2
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 1.6e-92 343.6 308 56.2
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 2.1e-92 343.2 310 58.1
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 2.8e-92 342.8 305 58.0
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 1.8e-91 340.1 307 56.4
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 3.1e-91 339.3 307 56.4
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 4.0e-91 339.0 287 65.5
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 4.0e-91 339.0 307 55.7
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 2.0e-90 336.7 302 57.9
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 2.6e-90 336.3 307 58.0
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 3.4e-90 335.9 307 56.7
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 4.5e-90 335.5 313 55.0
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 4.5e-90 335.5 309 57.0
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 9.9e-90 334.3 313 55.3
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 9.9e-90 334.3 307 54.4
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 3.8e-89 332.4 307 54.7
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 8.4e-89 331.3 321 55.8
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 8.4e-89 331.3 307 56.0
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 1.4e-88 330.5 307 56.0
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 1.4e-88 330.5 309 55.7
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 7.1e-88 328.2 307 56.7
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 9.3e-88 327.8 309 55.3
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 1.2e-87 327.4 315 56.8
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 2.7e-87 326.2 312 54.2
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 3.5e-87 325.9 268 61.6
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 4.6e-87 325.5 313 57.5
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 1.0e-86 324.3 363 49.9
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 2.3e-86 323.2 308 55.2
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 1.5e-85 320.5 315 54.0
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 1.5e-85 320.5 315 54.0
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 2.5e-85 319.7 308 53.6
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 4.3e-85 318.9 315 54.6
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 5.6e-85 318.5 311 54.7
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 7.4e-85 318.2 310 54.8
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 2.8e-84 316.2 276 58.0
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 2.8e-84 316.2 276 58.0
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 4.8e-84 315.5 329 53.2
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 8.2e-84 314.7 314 51.6
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 9.0e-83 311.2 276 55.4
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 9.0e-83 311.2 278 56.8
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 2.0e-82 310.1 319 50.5
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 3.4e-82 309.3 277 55.2
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 5.8e-82 308.5 330 51.5
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 1.0e-81 307.8 276 57.2
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 8.4e-81 304.7 330 51.5
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 9.3e-80 301.2 308 53.2
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 2.1e-79 300.1 302 52.3
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 3.5e-79 299.3 321 49.5
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 6.0e-79 298.5 276 61.6
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 6.0e-79 298.5 305 51.8
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 1.0e-78 297.7 276 58.3
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 8.7e-78 294.7 278 54.3
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 2.5e-77 293.1 241 62.7
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 1.1e-75 287.7 315 51.1
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 2.4e-75 286.6 247 66.4
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 3.1e-75 286.2 270 52.6
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 3.1e-75 286.2 307 51.1
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 2.2e-73 280.0 241 61.0
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 8.8e-70 268.1 234 59.0
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 1.8e-67 260.4 247 54.3
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 5.3e-67 258.8 258 51.9
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 6.9e-67 258.5 285 51.2
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 2.6e-66 256.5 267 49.8
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 6.7e-62 241.9 217 59.4
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 1.1e-59 234.6 317 40.7
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 9.1e-59 231.5 320 42.2
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 9.1e-59 231.5 282 44.7
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 1.0e-57 228.0 279 43.0
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 1.2e-55 221.1 306 44.4
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 9.7e-53 211.5 191 56.5
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 2.0e-45 187.2 197 51.8
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 4.4e-45 186.0 166 57.2
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 3.7e-44 183.0 137 65.7
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 9.8e-37 158.3 284 36.6
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 1.7e-36 157.5 109 63.3
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 3.6e-31 139.8 196 46.4
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 2.3e-25 120.6 97 62.9
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 2.1e-23 114.0 113 50.4


User provided reference genes

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