Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g33630 Schrenkiella parvula HOM05D005685 ORTHO05D007046 0.0e+00 1365.1 670 100.0
Thhalv10018251m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 0.0e+00 1132.9 661 85.2
AT1G78540 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 0.0e+00 1115.9 679 82.6
CARHR072030 Cardamine hirsuta HOM05D005685 ORTHO05D007046 1.7e-309 1065.4 676 79.1
Carub.0002s2539 Capsella rubella HOM05D005685 ORTHO05D007046 1.2e-305 1052.7 679 78.4
THA.LOC104808083 Tarenaya hassleriana HOM05D005685 ORTHO05D007046 1.7e-293 1012.3 692 74.4
AL2G38940 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 1.6e-291 1005.7 622 82.0
Thhalv10006979m.g Eutrema salsugineum HOM05D005685 ORTHO05D007046 1.7e-288 995.7 696 72.8
Sp1g15160 Schrenkiella parvula HOM05D005685 ORTHO05D007046 1.1e-287 993.0 695 72.8
AL7G51000 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 4.9e-280 967.6 693 71.6
Carub.0001s1676 Capsella rubella HOM05D005685 ORTHO05D007046 1.5e-276 956.1 687 70.7
CARHR017570 Cardamine hirsuta HOM05D005685 ORTHO05D007046 2.0e-273 945.7 709 68.3
Aa31LG4G2430 Aethionema arabicum HOM05D005685 ORTHO05D007046 2.9e-272 941.8 647 73.3
Aa31LG7G1870 Aethionema arabicum HOM05D005685 ORTHO05D007046 4.2e-263 911.4 691 67.6
BraA06t24453Z Brassica rapa HOM05D005685 ORTHO05D007046 4.2e-263 911.4 689 67.8
C05p15360 Brassica napus HOM05D005685 ORTHO05D007046 6.0e-262 907.5 692 67.3
A06p12940 Brassica napus HOM05D005685 ORTHO05D007046 7.8e-262 907.1 689 67.6
AT1G17040 Arabidopsis thaliana HOM05D005685 ORTHO05D007046 1.4e-258 896.3 645 69.8
BolC5t30242H Brassica oleracea HOM05D005685 ORTHO05D007046 1.7e-256 889.4 718 64.5
AL1G29220 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 3.9e-229 798.5 589 70.1
Cpa.g.sc77.65 Carica papaya HOM05D005685 ORTHO05D007046 3.8e-224 781.9 660 60.5
Dinv13349 Davidia involucrata HOM05D005685 ORTHO05D007046 8.0e-206 721.1 718 52.6
Lj1g0015970 Lotus japonicus HOM05D005685 ORTHO05D007046 2.2e-203 713.0 708 53.0
Lalb_Chr19g0133681 Lupinus albus HOM05D005685 ORTHO05D007046 2.1e-198 696.4 714 52.8
Haze_08449 Corylus avellana HOM05D005685 ORTHO05D007046 2.3e-197 693.0 712 52.5
BcaC05g25679 Brassica carinata HOM05D005685 ORTHO05D007046 6.8e-197 691.4 555 64.9
Hma1.2p1_0713F.1_g207810 Hydrangea macrophylla HOM05D005685 ORTHO05D007046 8.8e-197 691.0 721 50.5
Actinidia12613 Actinidia chinensis HOM05D005685 ORTHO05D007046 2.0e-196 689.9 710 50.7
Phvul.011G173500 Phaseolus vulgaris HOM05D005685 ORTHO05D007046 4.4e-196 688.7 716 51.1
GSVIVG01014072001 Vitis vinifera HOM05D005685 ORTHO05D007046 9.8e-196 687.6 683 52.0
Ciclev10019120m.g Citrus clementina HOM05D005685 ORTHO05D007046 6.3e-195 684.9 708 51.3
CSS0007667 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 5.4e-194 681.8 723 50.2
VMungo1127G1789 Vigna mungo HOM05D005685 ORTHO05D007046 1.2e-193 680.6 715 50.3
CiPaw.11G154400 Carya illinoinensis HOM05D005685 ORTHO05D007046 2.7e-193 679.5 714 51.3
Prupe.4G154100 Prunus persica HOM05D005685 ORTHO05D007046 2.2e-192 676.4 709 50.9
MD11G1273300 Malus domestica HOM05D005685 ORTHO05D007046 1.6e-190 670.2 714 51.0
CANSAT56G0504 Cannabis sativa HOM05D005685 ORTHO05D007046 3.6e-190 669.1 719 51.0
Atru.chr2.1911 Acer truncatum HOM05D005685 ORTHO05D007046 2.0e-188 663.3 702 50.4
Gohir.A11G290000 Gossypium hirsutum HOM05D005685 ORTHO05D007046 6.3e-187 658.3 705 51.1
Gohir.D11G302400 Gossypium hirsutum HOM05D005685 ORTHO05D007046 1.6e-185 653.7 708 51.1
CsaV3_4G032730 Cucumis sativus L. HOM05D005685 ORTHO05D007046 5.9e-185 651.7 715 50.1
Manes.03G084500 Manihot esculenta HOM05D005685 ORTHO05D007046 5.9e-185 651.7 671 52.2
TAR605G0002 Trochodendron aralioides HOM05D005685 ORTHO05D007046 2.9e-184 649.4 722 48.9
Psat4g139160 Pisum sativum HOM05D005685 ORTHO05D007046 1.9e-183 646.7 720 49.0
ClCG11G017070 Citrullus lanatus HOM05D005685 ORTHO05D007046 3.3e-183 646.0 706 50.0
Gorai.007G332400 Gossypium raimondii HOM05D005685 ORTHO05D007046 5.6e-183 645.2 708 50.7
BcaB02g06680 Brassica carinata HOM05D005685 ORTHO05D007046 8.0e-182 641.3 509 66.8
FvH4_3g17370 Fragaria vesca HOM05D005685 ORTHO05D007046 5.7e-180 635.2 689 49.8
Medtr8g461480 Medicago truncatula HOM05D005685 ORTHO05D007046 9.8e-180 634.4 704 49.4
RhsimUnG0165000 Rhododendron simsii HOM05D005685 ORTHO05D007046 6.4e-179 631.7 658 49.8
Sed0016294 Sechium edule HOM05D005685 ORTHO05D007046 6.4e-179 631.7 717 48.7
Potri.001G380900 Populus trichocarpa HOM05D005685 ORTHO05D007046 8.3e-179 631.3 707 49.4
Nn1g00647 Nelumbo nucifera HOM05D005685 ORTHO05D007046 7.0e-178 628.2 720 49.0
Thecc.07G137700 Theobroma cacao HOM05D005685 ORTHO05D007046 1.0e-176 624.4 641 52.7
Potri.011G102100 Populus trichocarpa HOM05D005685 ORTHO05D007046 1.6e-174 617.1 708 49.3
Sabra11G0083400 Salix brachista HOM05D005685 ORTHO05D007046 1.8e-173 613.6 705 49.2
RhsimUnG0060100 Rhododendron simsii HOM05D005685 ORTHO05D007046 3.1e-173 612.8 658 48.9
TPR.G16474 Trifolium pratense HOM05D005685 ORTHO05D007046 3.1e-173 612.8 682 49.3
Sabra16G0251100 Salix brachista HOM05D005685 ORTHO05D007046 8.9e-173 611.3 728 48.2
Cc05_g10550 Coffea canephora HOM05D005685 ORTHO05D007046 1.5e-172 610.5 714 46.6
PGR031G3876 Punica granatum HOM05D005685 ORTHO05D007046 3.4e-172 609.4 706 47.9
FAN25G1369 Fragaria x ananassa HOM05D005685 ORTHO05D007046 7.5e-172 608.2 683 48.6
PSO063G4015 Papaver somniferum HOM05D005685 ORTHO05D007046 2.2e-171 606.7 716 46.1
PSO782G3742 Papaver somniferum HOM05D005685 ORTHO05D007046 1.6e-169 600.5 716 45.8
DCAR_017584 Daucus carota HOM05D005685 ORTHO05D007046 2.0e-169 600.1 716 45.9
RhsimUnG0224400 Rhododendron simsii HOM05D005685 ORTHO05D007046 2.3e-168 596.7 735 45.0
MSTRG.14992 Avicennia marina HOM05D005685 ORTHO05D007046 9.5e-167 591.3 721 44.7
Sc03g0010780 Simmondsia chinensis HOM05D005685 ORTHO05D007046 1.4e-165 587.4 705 45.5
Duzib213G0171 Durio zibethinus HOM05D005685 ORTHO05D007046 1.8e-165 587.0 705 46.7
Migut.M00685 Erythranthe guttata HOM05D005685 ORTHO05D007046 8.9e-165 584.7 693 46.3
EL10Ac4g08448 Beta vulgaris HOM05D005685 ORTHO05D007046 1.2e-164 584.3 712 44.5
Sopen07g030310 Solanum pennellii HOM05D005685 ORTHO05D007046 2.2e-163 580.1 703 44.8
Solyc07g062050.3 Solanum lycopersicum HOM05D005685 ORTHO05D007046 6.4e-163 578.6 703 44.8
FAN16G1001 Fragaria x ananassa HOM05D005685 ORTHO05D007046 3.9e-160 569.3 683 46.4
Ca_12745_v3 Cicer arietinum L. HOM05D005685 ORTHO05D007046 5.1e-160 568.9 665 48.0
MELO3C016678.2 Cucumis melo HOM05D005685 ORTHO05D007046 5.1e-160 568.9 756 43.9
HanXRQChr10g0305611 Helianthus annuus HOM05D005685 ORTHO05D007046 8.6e-160 568.2 710 45.1
CAN.G375.61 Capsicum annuum HOM05D005685 ORTHO05D007046 1.6e-158 563.9 704 44.3
Aqoxy4G01266 Aquilegia oxysepala HOM05D005685 ORTHO05D007046 2.1e-158 563.5 721 44.1
FAN21G3337 Fragaria x ananassa HOM05D005685 ORTHO05D007046 2.1e-158 563.5 708 44.6
SalBow8G2073 Salvia bowleyana HOM05D005685 ORTHO05D007046 8.1e-158 561.6 740 43.0
Lsat_1_v5_gn_5_126281 Lactuca sativa HOM05D005685 ORTHO05D007046 6.4e-155 552.0 705 42.3
COL.COLO4_17454 Corchorus olitorius HOM05D005685 ORTHO05D007046 7.1e-154 548.5 713 46.0
Peaxi162Scf00111g01236 Petunia axillaris HOM05D005685 ORTHO05D007046 1.2e-153 547.7 671 44.7
SGA_v2.0_scaffold73G24373 Striga asiatica HOM05D005685 ORTHO05D007046 6.8e-149 531.9 678 43.1
vmacro11986 Vaccinium macrocarpon HOM05D005685 ORTHO05D007046 1.2e-148 531.2 718 43.0
Lj1C822G13 Lonicera japonica HOM05D005685 ORTHO05D007046 4.4e-148 529.3 671 44.9
Ah.03g134490 Amaranthus hybridus HOM05D005685 ORTHO05D007046 3.3e-143 513.1 719 41.0
Cfa019501 Carpinus fangiana HOM05D005685 ORTHO05D007046 2.1e-142 510.4 569 50.3
Nitab4.5_0001140g0120 Nicotiana tabacum HOM05D005685 ORTHO05D007046 1.5e-140 504.2 716 40.2
PGSC0003DMG400007083 Solanum tuberosum HOM05D005685 ORTHO05D007046 2.0e-140 503.8 759 38.9
AUR62019678 Chenopodium quinoa HOM05D005685 ORTHO05D007046 4.9e-139 499.2 732 41.1
ATR0665G442 Amborella trichopoda HOM05D005685 ORTHO05D007046 2.4e-138 496.9 715 41.5
Zm00001eb004590 Zea mays HOM05D005685 ORTHO05D007046 9.9e-132 474.9 674 41.1
AUR62013935 Chenopodium quinoa HOM05D005685 ORTHO05D007046 1.6e-129 467.6 660 40.3
unitig_747.g21593 Utricularia gibba HOM05D005685 ORTHO05D007046 5.6e-127 459.1 687 40.2
BraA06t26874Z Brassica rapa HOM05D005685 ORTHO05D007046 6.2e-126 455.7 359 66.6
ECA234G1223 Erigeron canadensis HOM05D005685 ORTHO05D007046 3.1e-125 453.4 683 41.3
AagrBONN_evm.TU.Sc2ySwM_228.1006 Anthoceros agrestis HOM05D005685 ORTHO05D007046 4.5e-116 422.9 783 35.2
DCAR_013783 Daucus carota HOM05D005685 ORTHO05D007046 1.3e-115 421.4 677 38.0
Pp3c20_21160 Physcomitrium patens HOM05D005685 ORTHO05D007046 7.2e-114 415.6 774 35.5
Glyma.15G211900 Glycine max HOM05D005685 ORTHO05D007046 7.9e-113 412.1 508 47.2
SMO351G0414 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 1.3e-107 394.8 658 36.8
arahy.Tifrunner.gnm1.ann1.TIF1LK Arachis hypogaea HOM05D005685 ORTHO05D007046 9.4e-106 388.7 519 45.1
arahy.Tifrunner.gnm1.ann1.4M0U4E Arachis hypogaea HOM05D005685 ORTHO05D007046 1.6e-105 387.9 519 45.1
Mapoly0011s0171 Marchantia polymorpha HOM05D005685 ORTHO05D007046 8.8e-104 382.1 738 34.8
Nitab4.5_0003618g0060 Nicotiana tabacum HOM05D005685 ORTHO05D007046 2.1e-97 360.9 773 31.3
SEGI_25985 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 1.4e-96 358.2 632 35.6
RcHm_v2.0_Chr5g0028891 Rosa chinensis HOM05D005685 ORTHO05D007046 5.3e-93 346.3 279 60.2
TWI38G0887 Tripterygium wilfordii HOM05D005685 ORTHO05D007046 3.5e-92 343.6 257 63.8
RhsimUnG0062900 Rhododendron simsii HOM05D005685 ORTHO05D007046 3.8e-91 340.1 477 43.4
FAN11G3672 Fragaria x ananassa HOM05D005685 ORTHO05D007046 1.9e-90 337.8 481 41.6
HPP92_014870 Vanilla planifolia HOM05D005685 ORTHO05D007046 1.9e-90 337.8 610 34.8
CSS0011531 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 1.2e-89 335.1 365 48.5
Eucgr.F03221 Eucalyptus grandis HOM05D005685 ORTHO05D007046 1.3e-86 325.1 372 46.2
Glyma.15G212100 Glycine max HOM05D005685 ORTHO05D007046 4.1e-77 293.5 221 63.8
CDE04G2909 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 1.1e-66 258.8 493 34.9
Os10g0567300 Oryza sativa ssp. japonica HOM05D005685 ORTHO05D007046 3.4e-63 247.3 254 46.5
Eucgr.F03222 Eucalyptus grandis HOM05D005685 ORTHO05D007046 4.3e-58 230.3 339 41.0
CDE04G0489 Ceratophyllum demersum HOM05D005685 ORTHO05D007046 7.8e-44 183.0 308 37.0
CSS0047371 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 1.9e-42 178.3 119 64.7
Zm00001eb210210 Zea mays HOM05D005685 ORTHO05D007046 1.3e-22 112.5 158 41.8
MBI19_g17443_MAGBIO Magnolia biondii HOM05D005685 ORTHO05D007046 4.9e-22 110.5 103 55.3
A08p10430 Brassica napus HOM05D005685 ORTHO05D007046 3.0e-19 101.3 97 58.8
Pp3c7_2410 Physcomitrium patens HOM05D005685 ORTHO05D007046 3.2e-13 81.3 124 42.7
SMO145G0004 Selaginella moellendorffii HOM05D005685 ORTHO05D007046 1.2e-12 79.3 132 41.7
SEGI_34067 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 3.0e-11 74.7 127 35.4
CBR_g19551 Chara braunii HOM05D005685 ORTHO05D007046 3.9e-11 74.3 125 41.6
Mapoly0028s0082 Marchantia polymorpha HOM05D005685 ORTHO05D007046 6.7e-11 73.6 209 32.5
CSS0003149 Camellia sinensis var. sinensis HOM05D005685 ORTHO05D007046 1.1e-10 72.8 79 49.4
SEGI_05558 Sequoiadendron giganteum HOM05D005685 ORTHO05D007046 5.3e-08 63.9 103 34.0
CBR_g28498 Chara braunii HOM05D005685 ORTHO05D007046 6.9e-08 63.5 72 43.1


User provided reference genes

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