Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g33510 Schrenkiella parvula HOM05D004022 ORTHO05D004090 9.8e-53 209.9 110 100.0
Thhalv10019550m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 2.9e-44 181.8 110 87.3
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 5.4e-43 177.6 111 79.3
BcaB05g25138 Brassica carinata HOM05D004022 ORTHO05D004090 1.1e-40 169.9 110 80.0
BcaC08g47415 Brassica carinata HOM05D004022 ORTHO05D004090 3.3e-40 168.3 110 76.4
BraA07t31879Z Brassica rapa HOM05D004022 ORTHO05D004090 4.3e-40 167.9 110 76.4
AT1G78410 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 9.5e-40 166.8 108 81.5
Carub.0002s2531 Capsella rubella HOM05D004022 ORTHO05D004090 9.5e-40 166.8 112 80.4
A07p43670 Brassica napus HOM05D004022 ORTHO05D004090 1.2e-39 166.4 110 76.4
BcaB03g16016 Brassica carinata HOM05D004022 ORTHO05D004090 2.8e-39 165.2 110 75.5
BcaC03g15811 Brassica carinata HOM05D004022 ORTHO05D004090 4.7e-39 164.5 110 78.2
BcaC08g45417 Brassica carinata HOM05D004022 ORTHO05D004090 4.7e-39 164.5 110 76.4
C06p30490 Brassica napus HOM05D004022 ORTHO05D004090 4.7e-39 164.5 110 76.4
BolC6t38212H Brassica oleracea HOM05D004022 ORTHO05D004090 4.7e-39 164.5 110 76.4
A02p22170 Brassica napus HOM05D004022 ORTHO05D004090 6.2e-39 164.1 110 78.2
BraA02t07221Z Brassica rapa HOM05D004022 ORTHO05D004090 6.2e-39 164.1 110 78.2
BolC6t40255H Brassica oleracea HOM05D004022 ORTHO05D004090 8.0e-39 163.7 110 75.5
C02p35580 Brassica napus HOM05D004022 ORTHO05D004090 1.1e-38 163.3 110 77.3
A07p27550 Brassica napus HOM05D004022 ORTHO05D004090 1.4e-38 162.9 110 76.4
BraA07t30397Z Brassica rapa HOM05D004022 ORTHO05D004090 1.4e-38 162.9 110 76.4
BolC2t09573H Brassica oleracea HOM05D004022 ORTHO05D004090 8.3e-36 153.7 105 77.1
BcaB02g07170 Brassica carinata HOM05D004022 ORTHO05D004090 1.9e-35 152.5 106 74.5
CARHR071930 Cardamine hirsuta HOM05D004022 ORTHO05D004090 8.3e-28 127.1 118 66.1
CARHR017720 Cardamine hirsuta HOM05D004022 ORTHO05D004090 4.6e-26 121.3 110 60.9
C06p52350 Brassica napus HOM05D004022 ORTHO05D004090 1.9e-24 115.9 73 76.7
BolC5t30263H Brassica oleracea HOM05D004022 ORTHO05D004090 1.9e-24 115.9 105 60.0
C05p15530 Brassica napus HOM05D004022 ORTHO05D004090 2.5e-24 115.5 105 61.0
BcaC05g25663 Brassica carinata HOM05D004022 ORTHO05D004090 3.3e-24 115.2 105 61.0
BcaB07g34047 Brassica carinata HOM05D004022 ORTHO05D004090 4.3e-24 114.8 105 60.0
BcaC07g38833 Brassica carinata HOM05D004022 ORTHO05D004090 4.3e-24 114.8 105 56.2
C08p17730 Brassica napus HOM05D004022 ORTHO05D004090 4.3e-24 114.8 105 56.2
BraA06t24464Z Brassica rapa HOM05D004022 ORTHO05D004090 4.3e-24 114.8 107 60.7
A08p31100 Brassica napus HOM05D004022 ORTHO05D004090 5.6e-24 114.4 105 55.2
BraA08t35036Z Brassica rapa HOM05D004022 ORTHO05D004090 5.6e-24 114.4 105 55.2
A06p13050 Brassica napus HOM05D004022 ORTHO05D004090 9.5e-24 113.6 107 60.7
AL1G29370 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 2.1e-23 112.5 104 58.7
Aa31LG4G2550 Aethionema arabicum HOM05D004022 ORTHO05D004090 4.7e-23 111.3 114 65.8
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 4.7e-23 111.3 109 58.7
AT1G17147 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 8.1e-23 110.5 104 56.7
Sp1g15290 Schrenkiella parvula HOM05D004022 ORTHO05D004090 1.4e-22 109.8 105 55.2
Carub.0001s1689 Capsella rubella HOM05D004022 ORTHO05D004090 8.9e-22 107.1 103 54.4
BcaB03g13015 Brassica carinata HOM05D004022 ORTHO05D004090 3.4e-21 105.1 98 59.2
BolC8t49399H Brassica oleracea HOM05D004022 ORTHO05D004090 3.4e-21 105.1 99 55.6
Thhalv10009187m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 7.6e-21 104.0 105 55.2
Aa31LG7G1990 Aethionema arabicum HOM05D004022 ORTHO05D004090 2.9e-20 102.1 112 51.8
THA.LOC104812289 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 7.1e-19 97.4 110 56.4
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 3.4e-13 78.6 111 45.0
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.3e-12 76.6 101 44.6
Eucgr.F01407 Eucalyptus grandis HOM05D004022 ORTHO05D004090 2.2e-12 75.9 106 40.6
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 6.4e-12 74.3 109 34.9
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 6.4e-12 74.3 95 47.4
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 6.4e-12 74.3 104 44.2
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 1.1e-11 73.6 103 46.6
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 1.4e-11 73.2 103 44.7
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 1.9e-11 72.8 106 39.6
Nitab4.5_0001924g0010 Nicotiana tabacum HOM05D004022 ORTHO05D004090 2.4e-11 72.4 118 36.4
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 2.4e-11 72.4 104 40.4
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 3.2e-11 72.0 113 43.4
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 5.4e-11 71.2 100 43.0
Solyc07g056600.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 5.4e-11 71.2 106 36.8
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 1.2e-10 70.1 107 46.7
Nn3g20789 Nelumbo nucifera HOM05D004022 ORTHO05D004090 1.2e-10 70.1 108 37.0
Nn3g20790 Nelumbo nucifera HOM05D004022 ORTHO05D004090 1.2e-10 70.1 108 37.0
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.6e-10 69.7 101 45.5
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 2.1e-10 69.3 108 39.8
RcHm_v2.0_Chr5g0027761 Rosa chinensis HOM05D004022 ORTHO05D004090 2.7e-10 68.9 128 38.3
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 2.7e-10 68.9 98 42.9
Sabra16G0249100 Salix brachista HOM05D004022 ORTHO05D004090 4.6e-10 68.2 110 38.2
Sc03g0007740 Simmondsia chinensis HOM05D004022 ORTHO05D004090 4.6e-10 68.2 112 40.2
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 6.0e-10 67.8 103 42.7
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 6.0e-10 67.8 98 41.8
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 1.0e-09 67.0 100 37.0
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 1.3e-09 66.6 99 42.4
FAN21G1087 Fragaria x ananassa HOM05D004022 ORTHO05D004090 1.3e-09 66.6 127 37.8
Nitab4.5_0005080g0020 Nicotiana tabacum HOM05D004022 ORTHO05D004090 1.7e-09 66.2 117 35.9
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 1.7e-09 66.2 109 40.4
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 2.3e-09 65.9 136 33.8
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 2.3e-09 65.9 110 41.8
FAN16G3013 Fragaria x ananassa HOM05D004022 ORTHO05D004090 2.3e-09 65.9 127 37.8
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 3.0e-09 65.5 108 38.9
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 3.0e-09 65.5 108 38.9
Atru.chr10.1218 Acer truncatum HOM05D004022 ORTHO05D004090 3.9e-09 65.1 104 42.3
AUR62027101 Chenopodium quinoa HOM05D004022 ORTHO05D004090 5.1e-09 64.7 137 35.0
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 6.6e-09 64.3 102 41.2
Prupe.4G149000 Prunus persica HOM05D004022 ORTHO05D004090 6.6e-09 64.3 116 35.3
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 8.7e-09 63.9 99 38.4
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 8.7e-09 63.9 111 36.9
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 8.7e-09 63.9 105 37.1
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 1.1e-08 63.5 102 42.2
CSS0046120 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.5e-08 63.2 105 42.9
Migut.M00647 Erythranthe guttata HOM05D004022 ORTHO05D004090 1.9e-08 62.8 117 37.6
FAN11G3697 Fragaria x ananassa HOM05D004022 ORTHO05D004090 1.9e-08 62.8 127 37.0
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 1.9e-08 62.8 117 38.5
Ca_03390_v3 Cicer arietinum L. HOM05D004022 ORTHO05D004090 2.5e-08 62.4 106 37.7
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 2.5e-08 62.4 108 38.9
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 4.3e-08 61.6 116 37.1
FAN25G3340 Fragaria x ananassa HOM05D004022 ORTHO05D004090 4.3e-08 61.6 120 37.5
QL05p057789 Quercus lobata HOM05D004022 ORTHO05D004090 4.3e-08 61.6 107 38.3
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 5.6e-08 61.2 96 37.5
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 5.6e-08 61.2 93 41.9
Migut.M00651 Erythranthe guttata HOM05D004022 ORTHO05D004090 7.3e-08 60.8 104 40.4
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 7.3e-08 60.8 93 39.8
Rhsim06G0184700 Rhododendron simsii HOM05D004022 ORTHO05D004090 7.3e-08 60.8 97 40.2
Thecc.06G149800 Theobroma cacao HOM05D004022 ORTHO05D004090 7.3e-08 60.8 105 41.0
Nitab4.5_0000505g0120 Nicotiana tabacum HOM05D004022 ORTHO05D004090 9.6e-08 60.5 42 69.0
TPR.G2234 Trifolium pratense HOM05D004022 ORTHO05D004090 9.6e-08 60.5 111 34.2
unitig_899.g15299 Utricularia gibba HOM05D004022 ORTHO05D004090 9.6e-08 60.5 104 37.5
CSS0009778 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.3e-07 60.1 100 40.0
MELO3C016156.2 Cucumis melo HOM05D004022 ORTHO05D004090 1.3e-07 60.1 91 41.8
RhsimUnG0204300 Rhododendron simsii HOM05D004022 ORTHO05D004090 1.6e-07 59.7 39 66.7
Cfa019453 Carpinus fangiana HOM05D004022 ORTHO05D004090 2.1e-07 59.3 99 40.4
TWI38G0355 Tripterygium wilfordii HOM05D004022 ORTHO05D004090 2.8e-07 58.9 100 38.0
ClCG07G010500 Citrullus lanatus HOM05D004022 ORTHO05D004090 3.6e-07 58.5 91 40.7
ClCG07G010510 Citrullus lanatus HOM05D004022 ORTHO05D004090 3.6e-07 58.5 91 40.7
CsaV3_4G007830 Cucumis sativus L. HOM05D004022 ORTHO05D004090 4.8e-07 58.2 92 39.1
Peaxi162Scf00000g00573 Petunia axillaris HOM05D004022 ORTHO05D004090 4.8e-07 58.2 100 35.0
Haze_05605 Corylus avellana HOM05D004022 ORTHO05D004090 8.1e-07 57.4 112 37.5
COL.COLO4_31065 Corchorus olitorius HOM05D004022 ORTHO05D004090 1.1e-06 57.0 112 36.6
Gorai.009G154700 Gossypium raimondii HOM05D004022 ORTHO05D004090 1.1e-06 57.0 114 37.7
Gohir.A04G046900 Gossypium hirsutum HOM05D004022 ORTHO05D004090 1.4e-06 56.6 98 34.7
Manes.17G070600 Manihot esculenta HOM05D004022 ORTHO05D004090 1.4e-06 56.6 113 32.7
arahy.Tifrunner.gnm1.ann1.I20P02 Arachis hypogaea HOM05D004022 ORTHO05D004090 2.4e-06 55.8 42 69.0
Dinv32245 Davidia involucrata HOM05D004022 ORTHO05D004090 2.4e-06 55.8 97 36.1
FvH4_3g16620 Fragaria vesca HOM05D004022 ORTHO05D004090 2.4e-06 55.8 54 57.4
Gohir.A05G148100 Gossypium hirsutum HOM05D004022 ORTHO05D004090 2.4e-06 55.8 114 36.8
HanXRQChr11g0330361 Helianthus annuus HOM05D004022 ORTHO05D004090 2.4e-06 55.8 34 76.5
Peaxi162Scf00035g00165 Petunia axillaris HOM05D004022 ORTHO05D004090 2.4e-06 55.8 101 34.7
Gohir.D05G150601 Gossypium hirsutum HOM05D004022 ORTHO05D004090 3.1e-06 55.5 114 36.8
Gohir.D05G333300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 3.1e-06 55.5 52 53.8
unitig_746.g26690 Utricularia gibba HOM05D004022 ORTHO05D004090 3.1e-06 55.5 64 54.7
arahy.Tifrunner.gnm1.ann1.NFB54Z Arachis hypogaea HOM05D004022 ORTHO05D004090 4.0e-06 55.1 42 69.0
Lsat_1_v5_gn_7_101401 Lactuca sativa HOM05D004022 ORTHO05D004090 4.0e-06 55.1 101 33.7
Lj3g0000459 Lotus japonicus HOM05D004022 ORTHO05D004090 4.0e-06 55.1 100 36.0
Manes.15G122000 Manihot esculenta HOM05D004022 ORTHO05D004090 4.0e-06 55.1 118 33.9
Duzib192G0777 Durio zibethinus HOM05D004022 ORTHO05D004090 5.3e-06 54.7 115 40.0
DCAR_019636 Daucus carota HOM05D004022 ORTHO05D004090 6.9e-06 54.3 56 55.4
Dinv26665 Davidia involucrata HOM05D004022 ORTHO05D004090 6.9e-06 54.3 36 69.4
Lsat_1_v5_gn_7_101361 Lactuca sativa HOM05D004022 ORTHO05D004090 6.9e-06 54.3 101 34.7
Medtr2g070550 Medicago truncatula HOM05D004022 ORTHO05D004090 6.9e-06 54.3 37 67.6
Nitab4.5_0000639g0190 Nicotiana tabacum HOM05D004022 ORTHO05D004090 6.9e-06 54.3 106 34.0
Psat1g075360 Pisum sativum HOM05D004022 ORTHO05D004090 6.9e-06 54.3 75 42.7
Gohir.D10G042200 Gossypium hirsutum HOM05D004022 ORTHO05D004090 9.0e-06 53.9 114 39.5
Gorai.011G044800 Gossypium raimondii HOM05D004022 ORTHO05D004090 9.0e-06 53.9 114 39.5
Hma1.2p1_0325F.1_g125970 Hydrangea macrophylla HOM05D004022 ORTHO05D004090 9.0e-06 53.9 45 64.4


User provided reference genes

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