Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 0.0e+00 1160.2 731 100.0
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 3.2e-277 958.4 737 84.4
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 4.4e-274 948.0 732 84.3
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 4.9e-257 891.3 734 77.0
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 3.6e-236 822.0 740 78.0
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 4.3e-229 798.5 738 76.4
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 1.6e-220 770.0 731 68.8
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 1.2e-218 763.8 732 68.7
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 1.3e-217 760.4 728 72.7
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 1.9e-213 746.5 730 72.5
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 3.8e-209 732.3 734 66.8
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 6.4e-209 731.5 734 66.8
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 8.4e-209 731.1 734 67.2
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 2.4e-208 729.6 734 66.6
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 5.1e-206 721.8 734 66.3
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 2.3e-198 696.4 733 64.8
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 4.0e-195 685.6 730 64.9
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 4.2e-192 675.6 755 65.2
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 2.3e-190 669.8 748 63.2
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 3.9e-190 669.1 743 63.4
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 8.4e-185 651.4 737 62.6
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 3.6e-183 646.0 742 56.7
CARHR141460 Cardamine hirsuta HOM05D003721 ORTHO05D004303 2.3e-182 643.3 462 88.3
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 3.7e-180 636.0 659 65.4
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 9.0e-179 631.3 786 55.0
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 7.7e-178 628.2 743 59.5
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 3.6e-175 619.4 790 54.8
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 1.1e-173 614.4 790 52.5
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 5.0e-169 599.0 798 50.5
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 6.3e-164 582.0 783 59.9
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 5.3e-163 578.9 795 50.1
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.6e-162 577.4 782 55.5
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 5.9e-162 575.5 791 53.5
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 1.7e-161 573.9 783 60.2
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 9.4e-160 568.2 757 56.0
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 8.0e-159 565.1 801 49.2
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 2.3e-158 563.5 787 53.2
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 3.0e-158 563.1 790 48.5
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 3.0e-158 563.1 799 48.3
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 4.0e-158 562.8 781 48.8
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 8.8e-158 561.6 781 48.8
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 2.2e-156 557.0 759 53.9
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 8.2e-156 555.1 730 55.3
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 2.4e-155 553.5 807 47.7
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 2.4e-155 553.5 792 48.4
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 9.1e-155 551.6 800 48.2
Glyma.07G062500 Glycine max HOM05D003721 ORTHO05D004303 9.4e-152 541.6 745 49.3
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 3.4e-149 533.1 835 45.6
Glyma.16G030600 Glycine max HOM05D003721 ORTHO05D004303 4.4e-149 532.7 750 50.3
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 6.3e-148 528.9 791 46.6
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 1.1e-147 528.1 803 46.5
Lalb_Chr17g0338961 Lupinus albus HOM05D003721 ORTHO05D004303 1.2e-146 524.6 740 47.8
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 5.9e-146 522.3 696 55.6
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 4.2e-144 516.2 796 52.3
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 1.2e-143 514.6 811 46.4
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 1.2e-143 514.6 780 45.6
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 2.1e-143 513.8 780 45.3
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 2.7e-143 513.5 756 48.9
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 6.1e-143 512.3 786 47.6
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 1.4e-142 511.1 786 50.8
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 6.8e-142 508.8 783 48.1
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 1.2e-141 508.1 777 46.3
Lj1g0019249 Lotus japonicus HOM05D003721 ORTHO05D004303 2.6e-141 506.9 794 47.5
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 2.6e-141 506.9 787 46.9
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 2.6e-141 506.9 740 50.9
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 3.4e-141 506.5 782 47.6
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 4.4e-141 506.1 773 56.0
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 9.8e-141 505.0 787 49.4
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 2.2e-140 503.8 777 49.4
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 2.2e-140 503.8 751 47.5
TPR.G18168 Trifolium pratense HOM05D003721 ORTHO05D004303 4.9e-140 502.7 743 50.3
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 1.1e-139 501.5 790 50.1
VMungo0331G1476 Vigna mungo HOM05D003721 ORTHO05D004303 1.4e-139 501.1 723 48.0
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 2.4e-139 500.4 781 48.0
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 2.4e-139 500.4 787 45.2
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 5.4e-139 499.2 708 48.7
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 7.0e-139 498.8 783 47.4
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 7.0e-139 498.8 783 48.1
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.2e-138 498.0 781 48.0
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.6e-138 497.7 783 47.5
Glyma.09G253700 Glycine max HOM05D003721 ORTHO05D004303 1.6e-138 497.7 787 45.9
Glyma.18G239200 Glycine max HOM05D003721 ORTHO05D004303 4.5e-138 496.1 787 45.9
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 5.9e-138 495.7 792 48.9
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 1.0e-137 495.0 766 45.3
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 2.9e-137 493.4 792 45.3
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 3.8e-137 493.0 710 48.7
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 3.8e-137 493.0 777 48.3
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 3.3e-136 490.0 774 48.7
arahy.Tifrunner.gnm1.ann1.X01UQ7 Arachis hypogaea HOM05D003721 ORTHO05D004303 1.2e-135 488.0 759 45.6
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 1.2e-135 488.0 816 44.9
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 3.6e-135 486.5 791 49.6
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 6.1e-135 485.7 794 49.4
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 1.0e-134 485.0 782 49.6
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 3.0e-134 483.4 805 46.7
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 5.2e-134 482.6 849 47.0
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 6.8e-134 482.3 741 53.3
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 7.5e-133 478.8 939 40.0
Peaxi162Scf00020g01717 Petunia axillaris HOM05D003721 ORTHO05D004303 9.8e-133 478.4 796 45.0
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 1.3e-132 478.0 774 46.5
arahy.Tifrunner.gnm1.ann1.J8U9TP Arachis hypogaea HOM05D003721 ORTHO05D004303 2.9e-132 476.9 796 44.1
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 3.7e-132 476.5 783 52.4
PSO170G3080 Papaver somniferum HOM05D003721 ORTHO05D004303 1.6e-130 471.1 725 43.6
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 2.7e-130 470.3 700 52.6
Medtr8g028445 Medicago truncatula HOM05D003721 ORTHO05D004303 5.9e-130 469.2 725 50.9
PSO063G0643 Papaver somniferum HOM05D003721 ORTHO05D004303 3.9e-129 466.5 725 45.0
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 6.6e-129 465.7 807 48.2
ECA240G1536 Erigeron canadensis HOM05D003721 ORTHO05D004303 1.2e-127 461.5 759 44.9
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 6.2e-127 459.1 743 44.1
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 8.9e-126 455.3 786 47.8
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 5.8e-125 452.6 785 53.8
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 1.7e-124 451.1 781 42.5
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 3.7e-124 449.9 733 43.5
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 4.3e-120 436.4 789 42.0
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 9.5e-120 435.3 612 53.1
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 1.2e-119 434.9 724 45.4
MBI07_g11740_MAGBIO Magnolia biondii HOM05D003721 ORTHO05D004303 3.7e-116 423.3 811 44.1
Cpa.g.sc11.59 Carica papaya HOM05D003721 ORTHO05D004303 6.4e-116 422.5 458 55.7
MELO3C021177.2 Cucumis melo HOM05D003721 ORTHO05D004303 3.9e-113 413.3 699 49.8
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 1.4e-110 404.8 614 46.6
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 2.6e-109 400.6 613 45.8
unitig_52.g17061 Utricularia gibba HOM05D003721 ORTHO05D004303 3.4e-109 400.2 736 45.8
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 2.9e-108 397.1 627 44.0
Lalb_Chr04g0259321 Lupinus albus HOM05D003721 ORTHO05D004303 9.2e-107 392.1 491 52.1
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 1.0e-105 388.7 809 40.4
Phvul.008G057500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 5.6e-104 382.9 802 42.6
VMungo1383G3272 Vigna mungo HOM05D003721 ORTHO05D004303 1.4e-102 378.3 731 44.6
HPP92_023080 Vanilla planifolia HOM05D003721 ORTHO05D004303 1.1e-99 368.6 778 38.3
ATR1093G009 Amborella trichopoda HOM05D003721 ORTHO05D004303 9.3e-99 365.5 797 39.9
CDE02G2110 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 9.3e-99 365.5 755 38.1
Lsat_1_v5_gn_3_138600 Lactuca sativa HOM05D003721 ORTHO05D004303 3.5e-98 363.6 752 42.0
PGSC0003DMG400000197 Solanum tuberosum HOM05D003721 ORTHO05D004303 1.2e-93 348.6 362 58.3
CDE08G1001 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 6.4e-92 342.8 758 37.6
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 1.6e-90 338.2 852 37.7
Zm00001eb042060 Zea mays HOM05D003721 ORTHO05D004303 2.5e-88 330.9 727 39.9
Os08g0386900 Oryza sativa ssp. japonica HOM05D003721 ORTHO05D004303 2.1e-79 301.2 337 55.5
SEGI_16602 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 2.1e-79 301.2 318 56.6
BcaC07g40657 Brassica carinata HOM05D003721 ORTHO05D004303 4.2e-75 287.0 251 69.3
Mapoly0053s0042 Marchantia polymorpha HOM05D003721 ORTHO05D004303 9.7e-72 275.8 741 33.3
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 3.6e-66 257.3 596 37.1
Pp3c12_14500 Physcomitrium patens HOM05D003721 ORTHO05D004303 2.1e-58 231.5 262 52.3
QL01p002178 Quercus lobata HOM05D003721 ORTHO05D004303 8.2e-55 219.5 292 52.1
Pp3c3_18730 Physcomitrium patens HOM05D003721 ORTHO05D004303 4.7e-50 203.8 735 30.6
Hma1.2p1_0623F.1_g191170 Hydrangea macrophylla HOM05D003721 ORTHO05D004303 1.8e-46 191.8 378 40.5
TPR.G35781 Trifolium pratense HOM05D003721 ORTHO05D004303 1.6e-45 188.7 300 42.0
AagrBONN_evm.TU.Sc2ySwM_369.3 Anthoceros agrestis HOM05D003721 ORTHO05D004303 1.7e-44 185.3 220 48.2
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 2.6e-40 171.4 404 37.9
Haze_15579 Corylus avellana HOM05D003721 ORTHO05D004303 2.2e-39 168.3 190 57.4
BcaC08g45137 Brassica carinata HOM05D003721 ORTHO05D004303 1.2e-34 152.5 301 38.9
Actinidia10078 Actinidia chinensis HOM05D003721 ORTHO05D004303 3.5e-29 134.4 398 31.9
Haze_15574 Corylus avellana HOM05D003721 ORTHO05D004303 5.9e-29 133.7 170 52.9
SGA_v2.0_scaffold4G02274 Striga asiatica HOM05D003721 ORTHO05D004303 1.7e-28 132.1 183 51.4
Cpa.g.sc11.56 Carica papaya HOM05D003721 ORTHO05D004303 8.6e-28 129.8 112 66.1
arahy.Tifrunner.gnm1.ann1.LL4IHI Arachis hypogaea HOM05D003721 ORTHO05D004303 1.5e-24 119.0 132 50.8
BcaC08g45231 Brassica carinata HOM05D003721 ORTHO05D004303 3.4e-24 117.9 92 69.6
Lalb_Chr04g0259331 Lupinus albus HOM05D003721 ORTHO05D004303 3.4e-24 117.9 153 49.7
Carub.0005s2826 Capsella rubella HOM05D003721 ORTHO05D004303 2.4e-22 111.7 229 38.9
SHI13345 Sapria himalayana HOM05D003721 ORTHO05D004303 9.5e-19 99.8 107 50.5
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 4.4e-16 90.9 125 51.2
CBR_g40304 Chara braunii HOM05D001539 ORTHO05D000937 2.2e-15 88.6 113 44.2
MCO16G164 Micromonas commoda HOM05D003721 ORTHO05D004303 2.2e-15 88.6 207 32.4
BcaC07g40658 Brassica carinata HOM05D003721 ORTHO05D004303 3.7e-15 87.8 302 33.1
Actinidia10079 Actinidia chinensis HOM05D003721 ORTHO05D004303 7.0e-14 83.6 87 59.8
Actinidia37723 Actinidia chinensis HOM05D003721 ORTHO05D004303 2.0e-13 82.0 167 40.1
Actinidia21288 Actinidia chinensis HOM05D003721 ORTHO05D004303 6.0e-13 80.5 65 72.3
AL5G44110 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 1.5e-11 75.9 78 60.3
SEGI_39264 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 1.5e-11 75.9 129 40.3
Cre12.g495800 Chlamydomonas reinhardtii HOM05D003721 ORTHO05D004303 9.5e-11 73.2 204 30.4
BcaC07g40654 Brassica carinata HOM05D003721 ORTHO05D004303 4.7e-10 70.9 421 35.4
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 4.7e-10 70.9 79 57.0
CBR_g40298 Chara braunii HOM05D003721 ORTHO05D004303 4.4e-08 64.3 145 36.6
Rhsim05G0209700 Rhododendron simsii HOM05D003721 ORTHO05D004303 7.5e-08 63.5 76 52.6
Rhsim11G0030600 Rhododendron simsii HOM05D003721 ORTHO05D004303 9.8e-08 63.2 78 52.6


User provided reference genes

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