Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 7.6e-217 756.9 389 100.0
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 6.7e-181 637.5 379 86.0
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 1.4e-170 603.2 384 81.8
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 3.6e-166 588.6 383 84.1
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 2.3e-165 585.9 383 83.8
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 2.0e-164 582.8 384 84.1
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 2.2e-163 579.3 384 83.6
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 1.4e-162 576.6 377 81.7
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 3.8e-160 568.5 408 75.2
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 2.5e-159 565.8 385 81.3
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 3.6e-158 562.0 379 78.4
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 6.1e-150 534.6 342 83.3
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 6.3e-147 524.6 390 72.8
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 7.8e-129 464.5 380 66.1
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 9.9e-108 394.4 402 57.7
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 3.8e-107 392.5 409 53.8
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 2.4e-106 389.8 402 55.7
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 3.2e-106 389.4 403 55.6
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 3.2e-106 389.4 403 55.6
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 7.1e-106 388.3 403 56.8
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 3.9e-104 382.5 407 56.3
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 6.6e-104 381.7 401 54.4
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 4.8e-102 375.6 403 54.8
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 2.4e-101 373.2 408 53.4
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 1.2e-100 370.9 398 54.0
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 2.0e-100 370.2 407 53.8
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 2.6e-100 369.8 411 52.1
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 3.4e-100 369.4 409 53.3
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 5.8e-100 368.6 405 51.9
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 2.9e-99 366.3 413 52.5
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 2.9e-99 366.3 405 52.1
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 4.9e-99 365.5 415 52.0
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 8.4e-99 364.8 412 51.9
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 8.4e-99 364.8 409 52.8
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 1.9e-98 363.6 403 53.1
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 9.3e-98 361.3 402 52.5
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 2.1e-97 360.1 412 51.2
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 2.7e-97 359.8 405 51.4
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 1.8e-96 357.1 408 51.5
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 3.0e-96 356.3 407 51.4
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 3.9e-96 355.9 404 51.7
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 1.1e-95 354.4 414 49.8
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 2.5e-95 353.2 404 51.5
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 5.6e-95 352.1 405 51.6
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 7.4e-95 351.7 407 50.4
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.6e-94 350.5 392 52.3
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 6.2e-94 348.6 397 51.9
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 6.2e-94 348.6 390 49.2
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 8.1e-94 348.2 408 51.2
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 8.1e-94 348.2 417 50.8
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 1.1e-93 347.8 413 50.4
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 1.4e-93 347.4 413 48.9
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 6.9e-93 345.1 407 50.9
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.2e-92 344.4 404 51.2
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 4.5e-92 342.4 410 49.5
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 5.8e-92 342.0 440 47.7
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 1.7e-91 340.5 410 47.8
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 2.9e-91 339.7 405 50.4
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 4.9e-91 339.0 403 49.9
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 1.1e-90 337.8 407 48.4
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 1.4e-90 337.4 408 48.8
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 1.9e-90 337.0 400 49.5
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 9.3e-90 334.7 404 50.5
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 9.3e-90 334.7 396 49.0
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 1.2e-89 334.3 413 47.2
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 2.7e-89 333.2 407 48.2
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 3.5e-89 332.8 392 49.7
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 3.0e-88 329.7 429 46.4
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 3.9e-88 329.3 394 49.5
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 3.9e-88 329.3 444 45.0
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 6.7e-88 328.6 439 47.4
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 8.7e-88 328.2 397 49.4
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.5e-87 327.4 407 48.2
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.9e-87 327.0 444 44.8
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 2.5e-87 326.6 351 53.8
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 7.4e-87 325.1 436 45.4
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.3e-86 324.3 396 50.3
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 3.7e-86 322.8 325 55.4
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 4.8e-86 322.4 370 51.9
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 1.8e-85 320.5 406 47.5
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 2.4e-85 320.1 371 53.4
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 3.1e-85 319.7 377 50.7
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 3.1e-85 319.7 409 49.4
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 4.1e-85 319.3 405 48.1
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 1.5e-84 317.4 413 48.2
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 2.0e-84 317.0 378 49.5
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 4.5e-84 315.8 417 47.5
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 7.6e-84 315.1 383 49.9
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 1.0e-83 314.7 393 49.1
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 1.7e-83 313.9 422 46.7
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 2.9e-83 313.2 386 49.2
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 3.8e-83 312.8 446 43.9
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 6.5e-83 312.0 397 46.1
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 3.2e-82 309.7 397 47.4
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 4.2e-82 309.3 386 49.7
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 4.2e-82 309.3 371 47.7
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 6.1e-81 305.4 358 50.8
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 2.5e-79 300.1 351 51.9
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 8.2e-78 295.0 497 39.2
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 1.8e-77 293.9 411 46.5
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 3.8e-75 286.2 409 42.5
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 2.7e-73 280.0 329 50.2
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 5.3e-69 265.8 499 37.7
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 1.1e-66 258.1 426 39.9
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 3.0e-64 250.0 410 42.2
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 1.5e-63 247.7 376 45.5
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 7.4e-63 245.4 382 42.9
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 6.5e-59 232.3 317 47.3
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 2.8e-54 216.9 290 46.2
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 4.5e-52 209.5 356 42.7
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 2.9e-51 206.8 290 43.8
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 1.9e-50 204.1 324 40.1
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 4.7e-49 199.5 243 47.7
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 6.8e-48 195.7 229 50.7
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 2.2e-46 190.7 313 41.9
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 8.0e-41 172.2 452 32.5
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 1.0e-40 171.8 230 47.0
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 9.8e-39 165.2 331 36.0
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 1.2e-31 141.7 420 30.2
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 7.8e-28 129.0 163 49.7
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 5.0e-27 126.3 324 31.2
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 4.7e-25 119.8 130 49.2
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 6.2e-25 119.4 154 44.8
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 6.2e-25 119.4 154 44.8
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 5.8e-23 112.8 140 47.9
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 7.0e-21 105.9 111 54.1
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.7e-20 104.0 114 49.1
Sp4g28240 Schrenkiella parvula HOM05D005133 ORTHO05D006685 3.9e-19 100.1 52 84.6
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 8.6e-19 99.0 289 27.0
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 4.7e-17 93.2 45 86.7
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 1.1e-16 92.0 98 60.2
SMO117G0103 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 8.9e-16 89.0 148 41.9
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 4.6e-12 76.6 65 67.7
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 3.3e-10 70.5 65 58.5
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 2.1e-09 67.8 118 39.8
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.8e-08 64.7 102 39.2


User provided reference genes

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