Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g32420 Schrenkiella parvula HOM05D004258 ORTHO05D005163 5.9e-297 1023.5 528 100.0
Thhalv10018403m.g Eutrema salsugineum HOM05D004258 ORTHO05D005163 2.2e-235 818.9 525 78.7
Carub.0002s2412 Capsella rubella HOM05D004258 ORTHO05D005163 8.7e-232 807.0 528 76.9
AL2G37430 Arabidopsis lyrata HOM05D004258 ORTHO05D005163 2.3e-224 782.3 528 75.6
AT1G77250 Arabidopsis thaliana HOM05D004258 ORTHO05D005163 8.7e-224 780.4 529 74.9
CARHR070720 Cardamine hirsuta HOM05D004258 ORTHO05D005163 4.0e-221 771.5 529 74.5
BcaB02g07100 Brassica carinata HOM05D004258 ORTHO05D005163 6.3e-198 694.5 517 76.0
C06p31370 Brassica napus HOM05D004258 ORTHO05D005163 8.5e-195 684.1 515 75.0
BolC6t38273H Brassica oleracea HOM05D004258 ORTHO05D005163 8.8e-192 674.1 514 74.5
BraA07t30452Z Brassica rapa HOM05D004258 ORTHO05D005163 2.8e-190 669.1 514 69.8
A07p28070 Brassica napus HOM05D004258 ORTHO05D005163 1.1e-186 657.1 514 69.5
A07p42810 Brassica napus HOM05D004258 ORTHO05D005163 3.8e-179 632.1 527 64.9
C06p51420 Brassica napus HOM05D004258 ORTHO05D005163 7.2e-178 627.9 525 65.0
Aa31LG4G7240 Aethionema arabicum HOM05D004258 ORTHO05D005163 1.4e-176 623.6 524 64.1
BolC6t40160H Brassica oleracea HOM05D004258 ORTHO05D005163 1.7e-174 616.7 526 64.1
BraA07t31801Z Brassica rapa HOM05D004258 ORTHO05D005163 4.4e-167 592.0 537 61.5
BcaC08g45483 Brassica carinata HOM05D004258 ORTHO05D005163 1.8e-160 570.1 412 75.5
BcaNung04998 Brassica carinata HOM05D004258 ORTHO05D005163 1.1e-152 544.3 624 53.7
THA.LOC104813686 Tarenaya hassleriana HOM05D004258 ORTHO05D005163 3.4e-151 539.3 534 55.1
THA.LOC104812076 Tarenaya hassleriana HOM05D004258 ORTHO05D005163 3.3e-138 496.1 535 53.1
A06p09270 Brassica napus HOM05D004258 ORTHO05D005163 7.1e-109 398.7 318 65.7
Thecc.08G134400 Theobroma cacao HOM05D004258 ORTHO05D005163 3.2e-93 346.7 606 37.1
Gohir.D05G240700 Gossypium hirsutum HOM05D004258 ORTHO05D005163 4.8e-89 332.8 598 35.5
Gorai.009G249500 Gossypium raimondii HOM05D004258 ORTHO05D005163 4.8e-89 332.8 598 35.5
Duzib116G0801 Durio zibethinus HOM05D004258 ORTHO05D005163 1.4e-88 331.3 422 42.2
COL.COLO4_37672 Corchorus olitorius HOM05D004258 ORTHO05D005163 7.7e-87 325.5 460 39.8
Gohir.A05G238700 Gossypium hirsutum HOM05D004258 ORTHO05D005163 7.7e-87 325.5 597 35.3
Gohir.D05G240600 Gossypium hirsutum HOM05D004258 ORTHO05D005163 3.8e-86 323.2 597 38.5
Gorai.009G249400 Gossypium raimondii HOM05D004258 ORTHO05D005163 6.5e-86 322.4 597 38.5
Cfa018415 Carpinus fangiana HOM05D004258 ORTHO05D005163 1.4e-85 321.2 424 42.5
Haze_17646 Corylus avellana HOM05D004258 ORTHO05D005163 5.5e-85 319.3 424 42.5
RcHm_v2.0_Chr6g0296911 Rosa chinensis HOM05D004258 ORTHO05D005163 7.2e-85 318.9 524 37.4
Atru.chr13.1596 Acer truncatum HOM05D004258 ORTHO05D005163 2.0e-82 310.8 584 36.3
CSS0048101 Camellia sinensis var. sinensis HOM05D004258 ORTHO05D005163 3.3e-82 310.1 458 39.1
TWI34G1292 Tripterygium wilfordii HOM05D004258 ORTHO05D005163 4.4e-82 309.7 415 41.2
QL09p032109 Quercus lobata HOM05D004258 ORTHO05D005163 9.7e-82 308.5 422 42.2
FvH4_2g28030 Fragaria vesca HOM05D004258 ORTHO05D005163 1.3e-81 308.1 429 41.0
Dinv27259 Davidia involucrata HOM05D004258 ORTHO05D005163 1.7e-81 307.8 410 41.0
Lj1g0024592 Lotus japonicus HOM05D004258 ORTHO05D005163 1.1e-80 305.1 493 38.7
QL09p031581 Quercus lobata HOM05D004258 ORTHO05D005163 1.1e-80 305.1 422 41.7
MD08G1160700 Malus domestica HOM05D004258 ORTHO05D005163 2.4e-80 303.9 410 42.2
Prupe.1G487600 Prunus persica HOM05D004258 ORTHO05D005163 2.4e-80 303.9 423 40.2
CiPaw.15G030100 Carya illinoinensis HOM05D004258 ORTHO05D005163 4.1e-80 303.1 419 42.2
Manes.18G083535 Manihot esculenta HOM05D004258 ORTHO05D005163 3.5e-79 300.1 441 39.7
Rhsim11G0072600 Rhododendron simsii HOM05D004258 ORTHO05D005163 1.0e-78 298.5 459 37.9
Actinidia21269 Actinidia chinensis HOM05D004258 ORTHO05D005163 1.7e-78 297.7 430 40.0
MD15G1132400 Malus domestica HOM05D004258 ORTHO05D005163 1.7e-78 297.7 414 41.1
Sed0013187 Sechium edule HOM05D004258 ORTHO05D005163 2.5e-77 293.9 430 39.1
CiPaw.15G030500 Carya illinoinensis HOM05D004258 ORTHO05D005163 7.2e-77 292.4 426 40.6
Potri.005G183700 Populus trichocarpa HOM05D004258 ORTHO05D005163 9.4e-77 292.0 438 40.9
Eucgr.E00982 Eucalyptus grandis HOM05D004258 ORTHO05D005163 1.6e-76 291.2 416 39.2
vmacro00873 Vaccinium macrocarpon HOM05D004258 ORTHO05D005163 2.1e-76 290.8 503 35.8
Actinidia15205 Actinidia chinensis HOM05D004258 ORTHO05D005163 4.7e-76 289.7 433 38.6
Sabra05G0139100 Salix brachista HOM05D004258 ORTHO05D005163 4.7e-76 289.7 411 40.1
Gohir.A05G238800 Gossypium hirsutum HOM05D004258 ORTHO05D005163 8.0e-76 288.9 563 34.3
Glyma.13G035400 Glycine max HOM05D004258 ORTHO05D005163 1.4e-75 288.1 413 40.4
Glyma.14G156600 Glycine max HOM05D004258 ORTHO05D005163 1.4e-75 288.1 420 39.3
Lalb_Chr11g0066231 Lupinus albus HOM05D004258 ORTHO05D005163 1.4e-75 288.1 495 38.6
Lalb_Chr10g0101471 Lupinus albus HOM05D004258 ORTHO05D005163 3.0e-75 287.0 429 38.2
Lalb_Chr04g0253581 Lupinus albus HOM05D004258 ORTHO05D005163 3.9e-75 286.6 416 39.7
Glyma.06G118300 Glycine max HOM05D004258 ORTHO05D005163 5.2e-75 286.2 427 41.2
GSVIVG01008795001 Vitis vinifera HOM05D004258 ORTHO05D005163 5.2e-75 286.2 419 38.2
CsaV3_7G022050 Cucumis sativus L. HOM05D004258 ORTHO05D005163 8.8e-75 285.4 412 38.8
VMungo0647G1746 Vigna mungo HOM05D004258 ORTHO05D005163 8.8e-75 285.4 411 41.1
VMungo1309G2581 Vigna mungo HOM05D004258 ORTHO05D005163 5.7e-74 282.7 460 38.5
Phvul.001G067001 Phaseolus vulgaris HOM05D004258 ORTHO05D005163 7.4e-74 282.3 486 37.4
Ah.05g169020 Amaranthus hybridus HOM05D004258 ORTHO05D005163 1.3e-73 281.6 470 40.0
Cc10_g13570 Coffea canephora HOM05D004258 ORTHO05D005163 1.7e-73 281.2 421 39.0
Potri.002G076900 Populus trichocarpa HOM05D004258 ORTHO05D005163 3.7e-73 280.0 492 37.0
Ca_16617_v3 Cicer arietinum L. HOM05D004258 ORTHO05D005163 1.1e-72 278.5 438 39.5
Hma1.2p1_0159F.1_g070350 Hydrangea macrophylla HOM05D004258 ORTHO05D005163 1.1e-72 278.5 410 39.8
Oeu047167.1 Olea europaea HOM05D004258 ORTHO05D005163 1.4e-72 278.1 465 36.1
Ciclev10000725m.g Citrus clementina HOM05D004258 ORTHO05D005163 3.1e-72 276.9 422 38.2
Dinv14709 Davidia involucrata HOM05D004258 ORTHO05D005163 5.3e-72 276.2 501 35.9
MELO3C013235.2 Cucumis melo HOM05D004258 ORTHO05D005163 7.0e-72 275.8 467 35.5
Lalb_Chr17g0343571 Lupinus albus HOM05D004258 ORTHO05D005163 2.0e-71 274.2 475 34.9
FAN15G0778 Fragaria x ananassa HOM05D004258 ORTHO05D005163 3.5e-71 273.5 424 38.7
FAN15G1038 Fragaria x ananassa HOM05D004258 ORTHO05D005163 3.5e-71 273.5 424 38.7
FAN20G3077 Fragaria x ananassa HOM05D004258 ORTHO05D005163 1.0e-70 271.9 493 36.5
Peaxi162Scf00066g00717 Petunia axillaris HOM05D004258 ORTHO05D005163 1.0e-70 271.9 417 39.1
Sabra02G0060400 Salix brachista HOM05D004258 ORTHO05D005163 1.3e-70 271.6 485 35.5
FAN24G0072 Fragaria x ananassa HOM05D004258 ORTHO05D005163 1.7e-70 271.2 447 37.6
FAN27G1652 Fragaria x ananassa HOM05D004258 ORTHO05D005163 2.2e-70 270.8 497 36.2
Nitab4.5_0002625g0020 Nicotiana tabacum HOM05D004258 ORTHO05D005163 3.2e-69 266.9 443 36.6
Psat5g084240 Pisum sativum HOM05D004258 ORTHO05D005163 1.2e-68 265.0 418 37.6
EL10Ac1g01370 Beta vulgaris HOM05D004258 ORTHO05D005163 1.6e-68 264.6 419 36.3
Sc02g0004700 Simmondsia chinensis HOM05D004258 ORTHO05D005163 1.6e-68 264.6 424 36.3
ClCG11G008920 Citrullus lanatus HOM05D004258 ORTHO05D005163 3.6e-68 263.5 490 33.5
Nitab4.5_0008327g0020 Nicotiana tabacum HOM05D004258 ORTHO05D005163 4.7e-68 263.1 443 35.9
MSTRG.22397 Avicennia marina HOM05D004258 ORTHO05D005163 1.4e-67 261.5 476 37.4
Solyc04g058190.3 Solanum lycopersicum HOM05D004258 ORTHO05D005163 2.3e-67 260.8 466 36.1
Sed0013494 Sechium edule HOM05D004258 ORTHO05D005163 5.2e-67 259.6 426 35.2
TAR628G1383 Trochodendron aralioides HOM05D004258 ORTHO05D005163 6.8e-67 259.2 509 34.0
TAR381G0947 Trochodendron aralioides HOM05D004258 ORTHO05D005163 1.2e-66 258.5 492 33.9
CAN.G46.10 Capsicum annuum HOM05D004258 ORTHO05D005163 2.0e-66 257.7 415 36.6
arahy.Tifrunner.gnm1.ann1.57F5XX Arachis hypogaea HOM05D004258 ORTHO05D005163 2.6e-66 257.3 418 37.1
TPR.G6348 Trifolium pratense HOM05D004258 ORTHO05D005163 2.6e-66 257.3 417 36.2
PGR044G0336 Punica granatum HOM05D004258 ORTHO05D005163 4.4e-66 256.5 422 37.4
Sopen04g026090 Solanum pennellii HOM05D004258 ORTHO05D005163 4.4e-66 256.5 462 36.1
Manes.02G169600 Manihot esculenta HOM05D004258 ORTHO05D005163 5.7e-66 256.1 502 35.1
MSTRG.25354 Avicennia marina HOM05D004258 ORTHO05D005163 7.5e-66 255.8 422 36.5
SGA_v2.0_scaffold28G11967 Striga asiatica HOM05D004258 ORTHO05D005163 2.4e-64 250.8 409 35.2
arahy.Tifrunner.gnm1.ann1.D2PCJK Arachis hypogaea HOM05D004258 ORTHO05D005163 7.0e-64 249.2 417 37.2
PSO170G1843 Papaver somniferum HOM05D004258 ORTHO05D005163 1.6e-63 248.1 418 36.4
PSO528G0114 Papaver somniferum HOM05D004258 ORTHO05D005163 2.7e-63 247.3 414 35.7
Migut.C01074 Erythranthe guttata HOM05D004258 ORTHO05D005163 2.9e-62 243.8 481 33.5
DCAR_016655 Daucus carota HOM05D004258 ORTHO05D005163 5.0e-62 243.0 357 38.9
ECA232G4755 Erigeron canadensis HOM05D004258 ORTHO05D005163 8.5e-62 242.3 404 31.9
HanXRQChr09g0256641 Helianthus annuus HOM05D004258 ORTHO05D005163 1.5e-61 241.5 434 33.2
Cpa.g.sc64.156 Carica papaya HOM05D004258 ORTHO05D005163 1.2e-60 238.4 312 43.6
HanXRQChr15g0487241 Helianthus annuus HOM05D004258 ORTHO05D005163 1.8e-59 234.6 390 34.9
Oeu045955.1 Olea europaea HOM05D004258 ORTHO05D005163 3.4e-58 230.3 372 37.4
Hund26770 Selenicereus undatus HOM05D004258 ORTHO05D005163 5.7e-58 229.6 411 35.3
SGA_v2.0_scaffold25G11141 Striga asiatica HOM05D004258 ORTHO05D005163 3.7e-57 226.9 404 34.4
CANSAT25G3602 Cannabis sativa HOM05D004258 ORTHO05D005163 1.2e-55 221.9 407 32.7
Phvul.009G130800 Phaseolus vulgaris HOM05D004258 ORTHO05D005163 2.9e-54 217.2 307 40.7
TWI32G0532 Tripterygium wilfordii HOM05D004258 ORTHO05D005163 2.9e-54 217.2 337 37.7
MBI03_g13503_MAGBIO Magnolia biondii HOM05D004258 ORTHO05D005163 3.8e-54 216.9 446 36.8
Medtr3g088665 Medicago truncatula HOM05D004258 ORTHO05D005163 3.8e-54 216.9 419 33.9
Eucgr.L00408 Eucalyptus grandis HOM05D004258 ORTHO05D005163 4.2e-53 213.4 276 41.3
Lsat_1_v5_gn_4_134340 Lactuca sativa HOM05D004258 ORTHO05D005163 3.0e-51 207.2 455 30.5
CDE06G0269 Ceratophyllum demersum HOM05D004258 ORTHO05D005163 6.8e-51 206.1 460 33.7
Aqoxy3G01754 Aquilegia oxysepala HOM05D004258 ORTHO05D005163 1.2e-50 205.3 553 30.6
SHI09239 Sapria himalayana HOM05D004258 ORTHO05D005163 1.3e-49 201.8 409 32.3
unitig_0.g2112 Utricularia gibba HOM05D004258 ORTHO05D005163 6.3e-49 199.5 402 33.1
AUR62007696 Chenopodium quinoa HOM05D004258 ORTHO05D005163 3.2e-48 197.2 500 29.4
AUR62013446 Chenopodium quinoa HOM05D004258 ORTHO05D005163 5.4e-48 196.4 511 29.2
PGSC0003DMG400018006 Solanum tuberosum HOM05D004258 ORTHO05D005163 2.9e-46 190.7 277 40.8
Hma1.2p1_1935F.1_g308145 Hydrangea macrophylla HOM05D004258 ORTHO05D005163 1.1e-45 188.7 305 36.1
Eucgr.E03502 Eucalyptus grandis HOM05D004258 ORTHO05D005163 1.9e-45 188.0 252 39.3
Sabra05G0140400 Salix brachista HOM05D004258 ORTHO05D005163 4.3e-45 186.8 249 43.0
Zm00001eb174450 Zea mays HOM05D004258 ORTHO05D005163 6.1e-44 183.0 366 32.8
DCAR_028202 Daucus carota HOM05D004258 ORTHO05D005163 3.1e-43 180.6 279 38.7
Os08g0105000 Oryza sativa ssp. japonica HOM05D004258 ORTHO05D005163 1.7e-41 174.9 365 32.1
Zm00001eb260200 Zea mays HOM05D004258 ORTHO05D005163 2.7e-39 167.5 342 33.0
HPP92_001075 Vanilla planifolia HOM05D004258 ORTHO05D005163 2.5e-37 161.0 469 27.1
Lj4C663T10 Lonicera japonica HOM05D004258 ORTHO05D005163 2.6e-34 151.0 256 34.4
CiPaw.15G030600 Carya illinoinensis HOM05D004258 ORTHO05D005163 4.4e-34 150.2 281 35.2
ATR0820G108 Amborella trichopoda HOM05D004258 ORTHO05D005163 5.8e-34 149.8 418 28.7
Zm00001eb356650 Zea mays HOM05D004258 ORTHO05D005163 9.8e-34 149.1 448 28.3
Lj7A352T22 Lonicera japonica HOM05D004258 ORTHO05D005163 8.3e-33 146.0 443 27.1
SEGI_30620 Sequoiadendron giganteum HOM05D004258 ORTHO05D005163 4.4e-26 123.6 446 22.2
Eucgr.L03758 Eucalyptus grandis HOM05D004258 ORTHO05D005163 2.4e-24 117.9 140 45.0
SEGI_07426 Sequoiadendron giganteum HOM05D004258 ORTHO05D005163 4.1e-24 117.1 438 22.6
SEGI_17891 Sequoiadendron giganteum HOM05D004258 ORTHO05D005163 7.1e-24 116.3 471 22.7
CDE08G1116 Ceratophyllum demersum HOM05D004258 ORTHO05D005163 2.7e-23 114.4 205 31.2
Nn1g08938 Nelumbo nucifera HOM05D004258 ORTHO05D005163 3.4e-18 97.4 111 45.0
SEGI_25396 Sequoiadendron giganteum HOM05D004258 ORTHO05D005163 7.6e-18 96.3 217 25.3
Nn5g28458 Nelumbo nucifera HOM05D004258 ORTHO05D005163 1.4e-16 92.0 178 31.5
Zm00001eb145630 Zea mays HOM05D004258 ORTHO05D005163 2.7e-15 87.8 77 51.9
DCAR_028203 Daucus carota HOM05D004258 ORTHO05D005163 2.5e-13 81.3 87 46.0
Os01g0883400 Oryza sativa ssp. japonica HOM05D004258 ORTHO05D005163 2.5e-13 81.3 114 39.5
BcaC08g45482 Brassica carinata HOM05D004258 ORTHO05D005163 3.6e-12 77.4 89 59.6
Lj4A673G15 Lonicera japonica HOM05D004258 ORTHO05D005163 8.1e-12 76.3 59 54.2
Cfa009137 Carpinus fangiana HOM05D003353 ORTHO05D003751 3.8e-09 67.4 192 29.2
Haze_12169 Corylus avellana HOM05D003353 ORTHO05D003751 3.8e-09 67.4 195 28.7
Hma1.2p1_1177F.1_g264340 Hydrangea macrophylla HOM05D004258 ORTHO05D005163 5.4e-08 63.5 72 41.7
Sabra06G0215100 Salix brachista HOM05D003999 ORTHO05D005219 6.0e-07 60.1 106 29.2
MELO3C017428.2 Cucumis melo HOM05D003999 ORTHO05D005219 1.0e-06 59.3 52 42.3
Sc06g0001590 Simmondsia chinensis HOM05D003353 ORTHO05D003751 3.0e-06 57.8 147 25.2
Haze_22020 Corylus avellana HOM05D003999 ORTHO05D005219 3.9e-06 57.4 58 36.2
Thecc.09G004800 Theobroma cacao HOM05D003999 ORTHO05D005219 5.1e-06 57.0 57 35.1
Cfa013453 Carpinus fangiana HOM05D003999 ORTHO05D005219 6.6e-06 56.6 55 38.2
Glyma.06G001400 Glycine max HOM05D003999 ORTHO05D005219 6.6e-06 56.6 45 46.7
Lj4A663G30 Lonicera japonica HOM05D004258 ORTHO05D005163 6.6e-06 56.6 114 32.5
CsaV3_1G031880 Cucumis sativus L. HOM05D003999 ORTHO05D005219 8.7e-06 56.2 158 26.6
Potri.006G277400 Populus trichocarpa HOM05D003999 ORTHO05D005219 8.7e-06 56.2 64 32.8


User provided reference genes

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