Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g31920 Schrenkiella parvula HOM05D005242 ORTHO05D006778 1.9e-49 199.5 162 100.0
A02p20880 Brassica napus HOM05D005242 ORTHO05D006778 4.7e-27 125.2 73 86.3
BcaC03g15701 Brassica carinata HOM05D005242 ORTHO05D006778 6.1e-27 124.8 73 87.7
BolC2t09420H Brassica oleracea HOM05D005242 ORTHO05D018625 6.1e-27 124.8 73 87.7
BraA02t07119Z Brassica rapa HOM05D005242 ORTHO05D006778 1.0e-26 124.0 75 84.0
CARHR070310 Cardamine hirsuta HOM05D005242 ORTHO05D006778 1.0e-26 124.0 72 87.5
C02p32790 Brassica napus HOM05D005242 ORTHO05D006778 3.0e-26 122.5 73 86.3
BcaB05g25009 Brassica carinata HOM05D005242 ORTHO05D006778 4.4e-25 118.6 73 83.6
AT1G76770 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 7.5e-25 117.9 65 87.7
Carub.0002s2368 Capsella rubella HOM05D005242 ORTHO05D006778 1.7e-24 116.7 83 73.5
A07p42410 Brassica napus HOM05D005242 ORTHO05D006778 3.7e-24 115.5 62 87.1
BraA07t31767Z Brassica rapa HOM05D005242 ORTHO05D006778 3.7e-24 115.5 62 87.1
AL2G36920 Arabidopsis lyrata HOM05D005242 ORTHO05D006778 1.8e-23 113.2 73 76.7
C06p50980 Brassica napus HOM05D005242 ORTHO05D006778 1.7e-21 106.7 57 86.0
BolC6t40122H Brassica oleracea HOM05D005242 ORTHO05D006778 2.9e-21 105.9 60 81.7
Aa31LG4G6850 Aethionema arabicum HOM05D005242 ORTHO05D006778 4.2e-20 102.1 67 68.7
Carub.0002s2369 Capsella rubella HOM05D005242 ORTHO05D018625 1.8e-18 96.7 65 67.7
THA.LOC104813717 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 1.2e-17 94.0 73 64.4
AT1G76780 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 1.5e-17 93.6 62 67.7
BraA02t07120Z Brassica rapa HOM05D005242 ORTHO05D018625 1.5e-17 93.6 65 61.5
THA.LOC104812037 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 2.0e-17 93.2 71 69.0
Cpa.g.sc21.205 Carica papaya HOM05D005242 ORTHO05D006778 4.4e-17 92.0 68 64.7
Aa31LG4G6840 Aethionema arabicum HOM05D005242 ORTHO05D006778 9.8e-17 90.9 56 73.2
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 4.8e-16 88.6 71 56.3
COL.COLO4_08566 Corchorus olitorius HOM05D005242 ORTHO05D006778 1.8e-15 86.7 69 56.5
Duzib041G0461 Durio zibethinus HOM05D005242 ORTHO05D006778 9.1e-15 84.3 67 59.7
TWI60G1058 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 3.5e-14 82.4 73 56.2
Cfa018319 Carpinus fangiana HOM05D005242 ORTHO05D006778 2.9e-13 79.3 71 53.5
Haze_17757 Corylus avellana HOM05D005242 ORTHO05D006778 2.9e-13 79.3 71 53.5
CSS0002508 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 5.0e-13 78.6 59 59.3
CSS0020035 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 5.0e-13 78.6 59 59.3
Gorai.009G254600 Gossypium raimondii HOM05D005242 ORTHO05D006778 6.5e-13 78.2 65 55.4
Thecc.08G153500 Theobroma cacao HOM05D005242 ORTHO05D006778 6.5e-13 78.2 65 56.9
Gohir.A05G243801 Gossypium hirsutum HOM05D005242 ORTHO05D006778 8.5e-13 77.8 73 50.7
Potri.005G192700 Populus trichocarpa HOM05D005242 ORTHO05D006778 4.2e-12 75.5 67 56.7
MD10G1026100 Malus domestica HOM05D005242 ORTHO05D006778 5.5e-12 75.1 66 53.0
Oeu011949.1 Olea europaea HOM05D005242 ORTHO05D006778 5.5e-12 75.1 64 56.2
Peaxi162Scf00599g00049 Petunia axillaris HOM05D005242 ORTHO05D006778 5.5e-12 75.1 66 59.1
Migut.N03213 Erythranthe guttata HOM05D005242 ORTHO05D006778 7.2e-12 74.7 59 64.4
Prupe.8G031300 Prunus persica HOM05D005242 ORTHO05D006778 7.2e-12 74.7 79 48.1
Potri.002G067700 Populus trichocarpa HOM05D005242 ORTHO05D006778 9.5e-12 74.3 67 55.2
Rhsim11G0083400 Rhododendron simsii HOM05D005242 ORTHO05D006778 9.5e-12 74.3 71 54.9
SalBow6G1825 Salvia bowleyana HOM05D005242 ORTHO05D006778 9.5e-12 74.3 68 57.4
Atru.chr13.2099 Acer truncatum HOM05D005242 ORTHO05D006778 1.2e-11 73.9 71 54.9
Eucgr.F02701 Eucalyptus grandis HOM05D005242 ORTHO05D006778 1.2e-11 73.9 67 50.7
PSO210G0022 Papaver somniferum HOM05D005242 ORTHO05D006778 1.6e-11 73.6 73 50.7
Peaxi162Scf01294g00121 Petunia axillaris HOM05D005242 ORTHO05D006778 1.6e-11 73.6 71 53.5
QL02p039039 Quercus lobata HOM05D005242 ORTHO05D006778 1.6e-11 73.6 67 53.7
CiPaw.16G012200 Carya illinoinensis HOM05D005242 ORTHO05D006778 2.1e-11 73.2 66 54.5
MD05G1026800 Malus domestica HOM05D005242 ORTHO05D006778 2.1e-11 73.2 69 52.2
PSO447G0326 Papaver somniferum HOM05D005242 ORTHO05D006778 2.1e-11 73.2 73 49.3
Ciclev10003945m.g Citrus clementina HOM05D005242 ORTHO05D006778 3.6e-11 72.4 67 55.2
Cc10_g14420 Coffea canephora HOM05D005242 ORTHO05D006778 4.7e-11 72.0 66 51.5
TWI60G0101 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 4.7e-11 72.0 72 55.6
Lj2g0024086 Lotus japonicus HOM05D005242 ORTHO05D006778 6.1e-11 71.6 71 49.3
Sabra05G0147300 Salix brachista HOM05D005242 ORTHO05D006778 6.1e-11 71.6 67 56.7
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 6.1e-11 71.6 67 53.7
Ca_27679_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 1.0e-10 70.9 67 55.2
Hund17437 Selenicereus undatus HOM05D005242 ORTHO05D006778 1.4e-10 70.5 73 49.3
SGA_v2.0_scaffold19G08682 Striga asiatica HOM05D001302 ORTHO05D001107 1.4e-10 70.5 67 49.3
Manes.02G179900 Manihot esculenta HOM05D005242 ORTHO05D006778 1.8e-10 70.1 67 50.7
Nn5g28757 Nelumbo nucifera HOM05D005242 ORTHO05D006778 1.8e-10 70.1 67 50.7
Psat1g101840 Pisum sativum HOM05D005242 ORTHO05D006778 1.8e-10 70.1 71 52.1
GSVIVG01034538001 Vitis vinifera HOM05D005242 ORTHO05D006778 1.8e-10 70.1 67 49.3
CANSAT25G1562 Cannabis sativa HOM05D005242 ORTHO05D006778 3.0e-10 69.3 75 50.7
Nitab4.5_0001062g0060 Nicotiana tabacum HOM05D005242 ORTHO05D006778 3.0e-10 69.3 66 53.0
CAN.G268.26 Capsicum annuum HOM05D005242 ORTHO05D006778 4.0e-10 68.9 67 55.2
PGSC0003DMG400024099 Solanum tuberosum HOM05D005242 ORTHO05D006778 4.0e-10 68.9 67 52.2
Aqoxy5G02077 Aquilegia oxysepala HOM05D005242 ORTHO05D006778 5.2e-10 68.6 71 47.9
arahy.Tifrunner.gnm1.ann1.661UAU Arachis hypogaea HOM05D005242 ORTHO05D006778 5.2e-10 68.6 67 49.3
Nitab4.5_0010749g0010 Nicotiana tabacum HOM05D005242 ORTHO05D006778 5.2e-10 68.6 70 51.4
arahy.Tifrunner.gnm1.ann1.3DXP20 Arachis hypogaea HOM05D005242 ORTHO05D006778 6.8e-10 68.2 67 49.3
PGR042G2442 Punica granatum HOM05D005242 ORTHO05D006778 8.8e-10 67.8 64 53.1
Lalb_Chr19g0130231 Lupinus albus HOM05D005242 ORTHO05D006778 1.2e-09 67.4 65 52.3
Actinidia29532 Actinidia chinensis HOM05D005242 ORTHO05D006778 1.5e-09 67.0 67 46.3
Glyma.02G081300 Glycine max HOM05D005242 ORTHO05D006778 2.0e-09 66.6 73 45.2
Solyc04g071490.3 Solanum lycopersicum HOM05D005242 ORTHO05D006778 2.6e-09 66.2 67 49.3
Sopen04g027460 Solanum pennellii HOM05D005242 ORTHO05D006778 2.6e-09 66.2 67 49.3
CDE02G4447 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 3.4e-09 65.9 63 52.4
Glyma.16G166700 Glycine max HOM05D005242 ORTHO05D006778 3.4e-09 65.9 73 43.8
unitig_52.g17530 Utricularia gibba HOM05D005242 ORTHO05D006778 3.4e-09 65.9 60 53.3
Medtr1246s0010 Medicago truncatula HOM05D005242 ORTHO05D006778 5.7e-09 65.1 67 49.3
Nitab4.5_0002487g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 7.5e-09 64.7 66 47.0
VMungo0464G2160 Vigna mungo HOM05D005242 ORTHO05D006778 7.5e-09 64.7 67 44.8
CDE08G0940 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 1.3e-08 63.9 68 51.5
DCAR_014441 Daucus carota HOM05D005242 ORTHO05D006778 1.3e-08 63.9 70 45.7
Lalb_Chr21g0305491 Lupinus albus HOM05D005242 ORTHO05D006778 1.3e-08 63.9 66 50.0
Dinv25870 Davidia involucrata HOM05D005242 ORTHO05D006778 1.7e-08 63.5 68 51.5
arahy.Tifrunner.gnm1.ann1.BM3N3L Arachis hypogaea HOM05D005242 ORTHO05D006778 2.8e-08 62.8 67 46.3
Nitab4.5_0004505g0020 Nicotiana tabacum HOM05D005242 ORTHO05D006778 3.7e-08 62.4 66 43.9
arahy.Tifrunner.gnm1.ann1.H39N2I Arachis hypogaea HOM05D005242 ORTHO05D006778 4.9e-08 62.0 69 44.9
ClCG09G010170 Citrullus lanatus HOM05D005242 ORTHO05D006778 4.9e-08 62.0 59 49.2
ATR0820G162 Amborella trichopoda HOM05D005242 ORTHO05D006778 6.3e-08 61.6 68 48.5
CiPaw.15G015900 Carya illinoinensis HOM05D005242 ORTHO05D006778 6.3e-08 61.6 58 56.9
Lj5g0003985 Lotus japonicus HOM05D005242 ORTHO05D006778 6.3e-08 61.6 66 50.0
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 8.3e-08 61.2 65 47.7
CSS0021128 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 1.1e-07 60.8 66 47.0
Phvul.004G094700 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 1.4e-07 60.5 65 43.1
RcHm_v2.0_Chr6g0275301 Rosa chinensis HOM05D005242 ORTHO05D006778 1.4e-07 60.5 66 48.5
FvH4_2g13660 Fragaria vesca HOM05D005242 ORTHO05D006778 3.1e-07 59.3 64 45.3
FAN24G0150 Fragaria x ananassa HOM05D005242 ORTHO05D006778 3.1e-07 59.3 64 45.3
EL10Ac1g01555 Beta vulgaris HOM05D005242 ORTHO05D006778 4.1e-07 58.9 72 44.4
FAN15G2695 Fragaria x ananassa HOM05D005242 ORTHO05D006778 4.1e-07 58.9 64 45.3
Sed0006497 Sechium edule HOM05D005242 ORTHO05D006778 5.4e-07 58.5 68 47.1
Psat6g192600 Pisum sativum HOM05D005242 ORTHO05D006778 9.2e-07 57.8 65 46.2
vmacro01456 Vaccinium macrocarpon HOM05D005242 ORTHO05D006778 1.2e-06 57.4 64 46.9
FAN20G3127 Fragaria x ananassa HOM05D005242 ORTHO05D006778 2.7e-06 56.2 64 43.8
FAN27G0674 Fragaria x ananassa HOM05D005242 ORTHO05D006778 2.7e-06 56.2 64 43.8
Actinidia17789 Actinidia chinensis HOM05D005242 ORTHO05D006778 3.5e-06 55.8 64 40.6
Sc26g0002570 Simmondsia chinensis HOM05D005242 ORTHO05D006778 3.5e-06 55.8 73 41.1
DCAR_001139 Daucus carota HOM05D005242 ORTHO05D006778 4.5e-06 55.5 69 46.4
CAN.G18.12 Capsicum annuum HOM05D005242 ORTHO05D006778 5.9e-06 55.1 58 50.0
Ca_10684_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 5.9e-06 55.1 65 46.2


User provided reference genes

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