Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g31880 Schrenkiella parvula HOM05D010491 ORTHO05D012559 0.0e+00 2502.6 1361 100.0
BraA07t31765Z Brassica rapa HOM05D010491 ORTHO05D012559 1.3e-252 877.5 1527 44.4
A07p42390 Brassica napus HOM05D010491 ORTHO05D012559 1.6e-250 870.5 1564 44.2
BolC6t40120H Brassica oleracea HOM05D010491 ORTHO05D012559 2.8e-250 869.8 1654 43.2
C06p50950 Brassica napus HOM05D010491 ORTHO05D012559 1.5e-243 847.4 1730 40.9
AT1G76740 Arabidopsis thaliana HOM05D010491 ORTHO05D012559 3.9e-191 673.3 1411 40.4
CARHR070280 Cardamine hirsuta HOM05D010491 ORTHO05D012559 1.2e-171 608.6 1508 37.8
AL2G36890 Arabidopsis lyrata HOM05D010491 ORTHO05D012559 5.8e-147 526.6 1007 44.5
Aa31LG4G6810 Aethionema arabicum HOM05D010491 ORTHO05D012559 1.4e-132 478.8 1755 30.9
BcaB02g07074 Brassica carinata HOM05D010491 ORTHO05D012559 3.2e-44 185.3 402 38.8
THA.LOC104812032 Tarenaya hassleriana HOM05D010491 ORTHO05D010674 5.3e-39 167.9 830 28.9
BcaC08g45512 Brassica carinata HOM05D010491 ORTHO05D012559 1.8e-34 152.9 334 36.2
C06p31820 Brassica napus HOM05D010491 ORTHO05D012559 5.1e-34 151.4 274 39.8
BolC6t38310H Brassica oleracea HOM05D010491 ORTHO05D012559 8.7e-34 150.6 280 39.3
Carub.0002s2365 Capsella rubella HOM05D010491 ORTHO05D012559 3.3e-33 148.7 751 27.8
BraA07t30474Z Brassica rapa HOM05D010491 ORTHO05D012559 9.0e-31 140.6 324 38.3
Thhalv10018017m.g Eutrema salsugineum HOM05D010491 ORTHO05D012559 1.5e-30 139.8 697 27.3
A07p28380 Brassica napus HOM05D010491 ORTHO05D012559 1.0e-29 137.1 423 33.6
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 1.9e-20 106.3 230 37.0
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 1.9e-20 106.3 295 33.2
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 1.9e-20 106.3 295 33.2
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 3.2e-20 105.5 234 37.6
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 1.8e-18 99.8 234 35.9
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 3.0e-18 99.0 235 36.6
Gohir.D05G245401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 2.9e-13 82.4 201 34.3
Gorai.009G255200 Gossypium raimondii HOM05D013130 ORTHO05D022454 8.5e-13 80.9 201 33.8
Nitab4.5_0001344g0010 Nicotiana tabacum HOM05D011323 ORTHO05D010674 3.2e-12 79.0 96 50.0
Oeu051274.3 Olea europaea HOM05D027784 ORTHO05D010674 3.2e-12 79.0 101 47.5
Peaxi162Scf00079g00245 Petunia axillaris HOM05D011323 ORTHO05D010674 4.2e-12 78.6 156 39.1
Lj4C698G20 Lonicera japonica HOM05D011323 ORTHO05D010674 2.1e-11 76.3 107 43.0
SalBow7G1875 Salvia bowleyana HOM05D027784 ORTHO05D010674 3.6e-11 75.5 110 45.5
AUR62040588 Chenopodium quinoa HOM05D018884 ORTHO05D010674 4.7e-11 75.1 124 38.7
COL.COLO4_29877 Corchorus olitorius HOM05D013130 ORTHO05D022454 4.7e-11 75.1 130 40.0
AUR62026679 Chenopodium quinoa HOM05D018884 ORTHO05D010674 6.1e-11 74.7 97 45.4
SGA_v2.0_scaffold108G30881 Striga asiatica HOM05D001241 ORTHO05D010674 7.9e-11 74.3 106 42.5
Thecc.08G155200 Theobroma cacao HOM05D013130 ORTHO05D022454 7.9e-11 74.3 106 46.2
Migut.C00977 Erythranthe guttata HOM05D027784 ORTHO05D010674 1.0e-10 73.9 276 26.4
PGSC0003DMG400006365 Solanum tuberosum HOM05D011323 ORTHO05D010674 1.0e-10 73.9 92 50.0
MSTRG.1096 Avicennia marina HOM05D027784 ORTHO05D010674 1.4e-10 73.6 85 52.9
Gohir.A05G244401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 2.3e-10 72.8 398 27.6
Nitab4.5_0001187g0020 Nicotiana tabacum HOM05D011323 ORTHO05D010674 3.0e-10 72.4 312 26.3
RcHm_v2.0_Chr6g0274911 Rosa chinensis HOM05D012764 ORTHO05D017940 3.9e-10 72.0 91 49.5
Nn1g06053 Nelumbo nucifera HOM05D011323 ORTHO05D010674 1.1e-09 70.5 247 31.2
FvH4_2g13370 Fragaria vesca HOM05D012764 ORTHO05D017940 1.5e-09 70.1 91 48.4
MD05G1029500 Malus domestica HOM05D012764 ORTHO05D017940 1.5e-09 70.1 83 50.6
Duzib116G0432 Durio zibethinus HOM05D013130 ORTHO05D022454 4.4e-09 68.6 389 26.2
DCAR_001148 Daucus carota HOM05D033900 ORTHO05D010674 5.7e-09 68.2 84 46.4
PGR044G2651 Punica granatum HOM05D012764 ORTHO05D010674 7.4e-09 67.8 198 31.8
CANSAT25G2759 Cannabis sativa HOM05D013130 ORTHO05D010674 2.2e-08 66.2 82 50.0
FAN27G3106 Fragaria x ananassa HOM05D012764 ORTHO05D017940 2.2e-08 66.2 128 39.1
EL10Ac1g01580 Beta vulgaris HOM05D018884 ORTHO05D010674 2.8e-08 65.9 148 37.8
Cc10_g15040 Coffea canephora HOM05D011323 ORTHO05D010674 2.8e-08 65.9 131 36.6
Sopen04g027650 Solanum pennellii HOM05D011323 ORTHO05D010674 2.8e-08 65.9 609 24.0
FAN20G3084 Fragaria x ananassa HOM05D012764 ORTHO05D017940 3.7e-08 65.5 128 39.8
RcHm_v2.0_Chr6g0274831 Rosa chinensis HOM05D012764 ORTHO05D010674 3.7e-08 65.5 250 31.2
Hund26684 Selenicereus undatus HOM05D011323 ORTHO05D010674 4.8e-08 65.1 343 26.8
CSS0012606 Camellia sinensis var. sinensis HOM05D033310 ORTHO05D010674 1.1e-07 63.9 97 41.2
Cfa018307 Carpinus fangiana HOM05D015223 ORTHO05D010674 2.4e-07 62.8 133 32.3
Prupe.8G035200 Prunus persica HOM05D012764 ORTHO05D017940 2.4e-07 62.8 84 46.4
FAN15G3692 Fragaria x ananassa HOM05D012764 ORTHO05D017940 3.1e-07 62.4 161 34.2
Phvul.004G092800 Phaseolus vulgaris HOM05D028233 ORTHO05D015681 4.1e-07 62.0 43 69.8
Haze_17782 Corylus avellana HOM05D015223 ORTHO05D010674 7.0e-07 61.2 166 31.3
FAN24G0895 Fragaria x ananassa HOM05D012764 ORTHO05D010674 9.1e-07 60.8 113 38.1
VMungo0464G2099 Vigna mungo HOM05D028233 ORTHO05D012559 9.1e-07 60.8 43 67.4
Glyma.02G080700 Glycine max HOM05D028233 ORTHO05D015681 1.2e-06 60.5 46 65.2
FvH4_2g13350 Fragaria vesca HOM05D012764 ORTHO05D010674 1.5e-06 60.1 113 38.1
Dinv25882 Davidia involucrata HOM05D016043 ORTHO05D010674 2.0e-06 59.7 67 46.3
FvH4_2g13360 Fragaria vesca HOM05D012764 ORTHO05D017940 2.0e-06 59.7 50 60.0
Glyma.16G165600 Glycine max HOM05D028233 ORTHO05D015681 2.0e-06 59.7 43 65.1
FAN24G2902 Fragaria x ananassa HOM05D012764 ORTHO05D017940 2.6e-06 59.3 93 45.2
Lj7A375T60 Lonicera japonica HOM05D011323 ORTHO05D010674 2.6e-06 59.3 42 61.9
Solyc04g071660.3 Solanum lycopersicum HOM05D011323 ORTHO05D010674 2.6e-06 59.3 598 24.1
arahy.Tifrunner.gnm1.ann1.UU4M73 Arachis hypogaea HOM05D053442 ORTHO05D010674 5.9e-06 58.2 42 61.9
HanXRQChr11g0343441 Helianthus annuus HOM05D011323 ORTHO05D010674 5.9e-06 58.2 93 39.8


User provided reference genes

Program Settings