Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g31280 Schrenkiella parvula HOM05D005792 ORTHO05D007171 4.7e-177 624.4 311 100.0
Thhalv10018917m.g Eutrema salsugineum HOM05D005792 ORTHO05D007171 6.6e-163 577.4 311 92.3
AT1G76150 Arabidopsis thaliana HOM05D005792 ORTHO05D007171 1.1e-162 576.6 311 91.6
AL2G36210 Arabidopsis lyrata HOM05D005792 ORTHO05D007171 2.5e-162 575.5 311 91.0
BcaC08g47286 Brassica carinata HOM05D005792 ORTHO05D007171 3.3e-162 575.1 311 92.0
Carub.0002s2304 Capsella rubella HOM05D005792 ORTHO05D007171 3.4e-159 565.1 311 89.7
CARHR069700 Cardamine hirsuta HOM05D005792 ORTHO05D007171 1.3e-158 563.1 311 90.4
BraA07t31701Z Brassica rapa HOM05D005792 ORTHO05D007171 1.1e-152 543.5 311 88.7
C06p50100 Brassica napus HOM05D005792 ORTHO05D007171 1.4e-152 543.1 311 88.4
A07p41720 Brassica napus HOM05D005792 ORTHO05D007171 3.1e-152 542.0 311 88.1
BcaNung05119 Brassica carinata HOM05D005792 ORTHO05D007171 4.2e-149 531.6 311 86.8
THA.LOC104813765 Tarenaya hassleriana HOM05D005792 ORTHO05D007171 6.6e-147 524.2 311 82.3
Aa31LG4G6270 Aethionema arabicum HOM05D005792 ORTHO05D007171 8.1e-145 517.3 311 83.9
BolC6t40050H Brassica oleracea HOM05D005792 ORTHO05D007171 1.4e-141 506.5 357 75.1
Potri.005G247600 Populus trichocarpa HOM05D005792 ORTHO05D007171 7.9e-132 474.2 308 73.7
Manes.18G007700 Manihot esculenta HOM05D005792 ORTHO05D007171 1.3e-131 473.4 306 74.5
Prupe.1G357300 Prunus persica HOM05D005792 ORTHO05D007171 6.9e-128 461.1 311 71.7
CiPaw.08G070700 Carya illinoinensis HOM05D005792 ORTHO05D007171 1.5e-127 459.9 306 72.2
Thecc.08G054700 Theobroma cacao HOM05D005792 ORTHO05D007171 5.8e-127 458.0 311 72.7
CiPaw.08G070500 Carya illinoinensis HOM05D005792 ORTHO05D007171 1.0e-126 457.2 306 71.9
Glyma.06G019900 Glycine max HOM05D005792 ORTHO05D007171 1.7e-126 456.4 308 72.1
Ca_15448_v3 Cicer arietinum L. HOM05D005792 ORTHO05D007171 6.4e-126 454.5 306 71.2
Atru.chr13.181 Acer truncatum HOM05D005792 ORTHO05D007171 1.9e-125 453.0 309 71.8
TWI36G1625 Tripterygium wilfordii HOM05D005792 ORTHO05D007171 2.5e-125 452.6 309 72.2
BcaC08g47109 Brassica carinata HOM05D005792 ORTHO05D007171 3.2e-125 452.2 305 78.4
VMungo1309G0997 Vigna mungo HOM05D005792 ORTHO05D007171 9.3e-125 450.7 306 71.2
Medtr3g115040 Medicago truncatula HOM05D005792 ORTHO05D007171 2.7e-124 449.1 309 70.9
CANSAT51G0003 Cannabis sativa HOM05D005792 ORTHO05D007171 3.5e-124 448.7 311 70.1
CsaV3_2G024540 Cucumis sativus L. HOM05D005792 ORTHO05D007171 6.0e-124 448.0 311 69.8
Duzib093G0813 Durio zibethinus HOM05D005792 ORTHO05D007171 6.0e-124 448.0 307 69.1
Lalb_Chr23g0265871 Lupinus albus HOM05D005792 ORTHO05D007171 6.0e-124 448.0 304 70.1
FvH4_2g37800 Fragaria vesca HOM05D005792 ORTHO05D007171 1.0e-123 447.2 304 72.4
Eucgr.F01710 Eucalyptus grandis HOM05D005792 ORTHO05D007171 1.3e-123 446.8 311 68.8
Psat5g010960 Pisum sativum HOM05D005792 ORTHO05D007171 1.3e-123 446.8 306 69.9
Gohir.D05G256800 Gossypium hirsutum HOM05D005792 ORTHO05D007171 5.1e-123 444.9 307 69.1
Gorai.009G268300 Gossypium raimondii HOM05D005792 ORTHO05D007171 6.7e-123 444.5 307 69.1
Atru.chr13.183 Acer truncatum HOM05D005792 ORTHO05D007171 1.5e-122 443.4 311 69.1
Sed0026749 Sechium edule HOM05D005792 ORTHO05D007171 1.9e-122 443.0 311 68.5
Glyma.04G019600 Glycine max HOM05D005792 ORTHO05D007171 3.3e-122 442.2 314 69.7
Atru.chr1.2256 Acer truncatum HOM05D005792 ORTHO05D007171 4.3e-122 441.8 310 69.4
PGR083G0297 Punica granatum HOM05D005792 ORTHO05D007171 5.6e-122 441.4 300 70.3
MD08G1005200 Malus domestica HOM05D005792 ORTHO05D007171 9.6e-122 440.7 306 70.3
RcHm_v2.0_Chr6g0303911 Rosa chinensis HOM05D005792 ORTHO05D007171 9.6e-122 440.7 306 70.9
MELO3C011330.2 Cucumis melo HOM05D005792 ORTHO05D007171 1.3e-121 440.3 325 67.4
Lj1g0011663 Lotus japonicus HOM05D005792 ORTHO05D007171 1.6e-121 439.9 304 69.4
Ciclev10001939m.g Citrus clementina HOM05D005792 ORTHO05D007171 8.2e-121 437.6 312 69.6
Dinv39569 Davidia involucrata HOM05D005792 ORTHO05D007171 1.8e-120 436.4 308 67.5
QL02p013536 Quercus lobata HOM05D005792 ORTHO05D007171 3.1e-120 435.6 312 68.3
Manes.05G141100 Manihot esculenta HOM05D005792 ORTHO05D007171 5.3e-120 434.9 311 68.2
Sed0027939 Sechium edule HOM05D005792 ORTHO05D007171 1.5e-119 433.3 311 67.5
Nitab4.5_0000498g0200 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.9e-117 426.4 309 66.3
AUR62013837 Chenopodium quinoa HOM05D005792 ORTHO05D007171 1.2e-116 423.7 305 66.2
Nitab4.5_0002353g0010 Nicotiana tabacum HOM05D005792 ORTHO05D007171 3.5e-116 422.2 304 66.4
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 4.6e-116 421.8 281 72.2
EL10Ac1g02028 Beta vulgaris HOM05D005792 ORTHO05D007171 1.8e-115 419.9 303 66.7
arahy.Tifrunner.gnm1.ann1.NZM2IS Arachis hypogaea HOM05D005792 ORTHO05D007171 2.3e-115 419.5 342 62.3
CSS0018708 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 3.0e-115 419.1 311 65.0
Hund05134 Selenicereus undatus HOM05D005792 ORTHO05D007171 3.0e-115 419.1 309 65.7
HanXRQChr14g0429001 Helianthus annuus HOM05D005792 ORTHO05D007171 6.7e-115 417.9 307 65.8
CSS0011850 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.5e-114 416.8 311 64.3
GSVIVG01008709001 Vitis vinifera HOM05D005792 ORTHO05D007171 1.5e-114 416.8 309 65.7
CAN.G401.3 Capsicum annuum HOM05D005792 ORTHO05D007171 1.9e-114 416.4 309 66.0
Duzib116G0262 Durio zibethinus HOM05D005792 ORTHO05D007171 3.3e-114 415.6 277 70.4
ECA238G1749 Erigeron canadensis HOM05D005792 ORTHO05D007171 3.3e-114 415.6 307 65.5
Solyc12g094450.3 Solanum lycopersicum HOM05D005792 ORTHO05D007171 4.3e-114 415.2 309 65.4
Peaxi162Scf00064g00910 Petunia axillaris HOM05D005792 ORTHO05D007171 7.4e-114 414.5 309 66.3
vmacro21840 Vaccinium macrocarpon HOM05D005792 ORTHO05D007171 7.4e-114 414.5 337 60.2
CSS0016825 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 2.2e-113 412.9 316 63.9
Sopen12g031340 Solanum pennellii HOM05D005792 ORTHO05D007171 2.2e-113 412.9 309 65.0
Sc26g0004560 Simmondsia chinensis HOM05D005792 ORTHO05D007171 8.2e-113 411.0 301 66.8
Haze_22736 Corylus avellana HOM05D005792 ORTHO05D007171 1.4e-112 410.2 289 69.2
Hma1.2p1_1260F.1_g270990 Hydrangea macrophylla HOM05D005792 ORTHO05D007171 3.1e-112 409.1 306 65.0
Migut.C00916 Erythranthe guttata HOM05D005792 ORTHO05D007171 9.0e-112 407.5 306 63.7
Gohir.A05G255200 Gossypium hirsutum HOM05D005792 ORTHO05D007171 9.0e-112 407.5 310 64.8
Lsat_1_v5_gn_2_5940 Lactuca sativa HOM05D005792 ORTHO05D007171 1.2e-111 407.1 310 64.2
Aqoxy6G01867 Aquilegia oxysepala HOM05D005792 ORTHO05D007171 1.5e-111 406.8 309 61.8
Nn5g30890 Nelumbo nucifera HOM05D005792 ORTHO05D007171 2.0e-111 406.4 308 63.0
unitig_747.g21523 Utricularia gibba HOM05D005792 ORTHO05D007171 2.0e-111 406.4 309 63.8
PGSC0003DMG400029326 Solanum tuberosum HOM05D005792 ORTHO05D007171 3.8e-110 402.1 338 60.1
Cc10_g00990 Coffea canephora HOM05D005792 ORTHO05D007171 5.0e-110 401.7 317 62.5
Lj4C15T2 Lonicera japonica HOM05D005792 ORTHO05D007171 5.5e-109 398.3 306 63.4
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 9.4e-109 397.5 289 69.2
Os09g0544900 Oryza sativa ssp. japonica HOM05D005792 ORTHO05D007171 1.2e-108 397.1 304 63.5
PSO541G2987 Papaver somniferum HOM05D005792 ORTHO05D007171 1.8e-107 393.3 301 62.5
Rhsim06G0009800 Rhododendron simsii HOM05D005792 ORTHO05D007171 1.8e-107 393.3 308 62.3
SalBow7G0964 Salvia bowleyana HOM05D005792 ORTHO05D007171 2.5e-106 389.4 293 62.8
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 1.3e-105 387.1 282 69.1
ClCG08G013930 Citrullus lanatus HOM05D005792 ORTHO05D007171 2.2e-105 386.3 351 57.8
MBI08_g05391_MAGBIO Magnolia biondii HOM05D005792 ORTHO05D007171 5.3e-104 381.7 283 65.7
TAR625G0413 Trochodendron aralioides HOM05D005792 ORTHO05D007171 1.0e-102 377.5 284 67.3
Actinidia15473 Actinidia chinensis HOM05D005792 ORTHO05D007171 2.5e-101 372.9 325 58.5
SGA_v2.0_scaffold351G49656 Striga asiatica HOM05D005792 ORTHO05D007171 3.9e-99 365.5 311 59.5
DCAR_016749 Daucus carota HOM05D005792 ORTHO05D007171 7.4e-98 361.3 366 51.6
SHI08027 Sapria himalayana HOM05D005792 ORTHO05D007171 6.7e-91 338.2 293 58.0
Ah.11g040640 Amaranthus hybridus HOM05D005792 ORTHO05D007171 2.6e-90 336.3 303 56.1
COL.COLO4_26053 Corchorus olitorius HOM05D005792 ORTHO05D007171 4.4e-90 335.5 312 57.7
Pp3c4_24330 Physcomitrium patens HOM05D005792 ORTHO05D007171 5.7e-90 335.1 310 56.8
DCAR_013899 Daucus carota HOM05D005792 ORTHO05D007171 8.2e-89 331.3 306 55.9
Nitab4.5_0000588g0300 Nicotiana tabacum HOM05D005792 ORTHO05D007171 3.8e-86 322.4 306 56.2
Haze_22722 Corylus avellana HOM05D005792 ORTHO05D007171 5.0e-86 322.0 282 59.2
Zm00001eb104070 Zea mays HOM05D005792 ORTHO05D007171 6.5e-86 321.6 237 65.4
PSO675G2870 Papaver somniferum HOM05D005792 ORTHO05D007171 1.6e-84 317.0 301 54.8
AUR62036768 Chenopodium quinoa HOM05D005792 ORTHO05D007171 2.6e-82 309.7 283 56.9
Phvul.009G020900 Phaseolus vulgaris HOM05D005792 ORTHO05D007171 7.5e-82 308.1 221 68.8
Gohir.D02G118150 Gossypium hirsutum HOM05D005792 ORTHO05D007171 1.7e-81 307.0 224 66.1
SMO174G0111 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 2.8e-81 306.2 301 52.5
Mapoly0135s0031 Marchantia polymorpha HOM05D005792 ORTHO05D007171 4.2e-69 265.8 306 45.4
arahy.Tifrunner.gnm1.ann1.CIDL5D Arachis hypogaea HOM05D005792 ORTHO05D007171 9.5e-69 264.6 203 65.0
ATR0661G150 Amborella trichopoda HOM05D005792 ORTHO05D007171 9.8e-66 254.6 192 66.7
TAR625G0324 Trochodendron aralioides HOM05D005792 ORTHO05D007171 2.4e-64 250.0 167 73.1
Zm00001eb321160 Zea mays HOM05D005792 ORTHO05D007171 2.4e-64 250.0 210 59.0
Oeu021471.1 Olea europaea HOM05D005792 ORTHO05D007171 3.5e-63 246.1 195 61.0
SEGI_22358 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 1.3e-62 244.2 198 62.6
MSTRG.25290 Avicennia marina HOM05D005792 ORTHO05D007171 1.9e-61 240.4 190 60.5
Sabra02G0010800 Salix brachista HOM05D005792 ORTHO05D007171 5.8e-58 228.8 232 54.7
AagrBONN_evm.TU.Sc2ySwM_117.3246 Anthoceros agrestis HOM05D005792 ORTHO05D007171 4.4e-50 202.6 203 51.2
CBR_g50912 Chara braunii HOM05D005792 ORTHO05D007171 4.4e-50 202.6 378 36.2
TPR.G753 Trifolium pratense HOM05D005792 ORTHO05D007171 1.7e-49 200.7 137 71.5
TPR.G38109 Trifolium pratense HOM05D005792 ORTHO05D007171 3.5e-47 193.0 306 38.2
CDE05G1591 Ceratophyllum demersum HOM05D005792 ORTHO05D007171 3.1e-43 179.9 150 54.7
Actinidia17028 Actinidia chinensis HOM05D005792 ORTHO05D007171 1.2e-42 177.9 164 54.3
CSS0030340 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.6e-39 167.5 131 62.6
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 1.1e-37 161.4 292 36.0
Cre06.g308100 Chlamydomonas reinhardtii HOM05D005792 ORTHO05D007171 5.4e-32 142.5 285 33.0
TAR625G0970 Trochodendron aralioides HOM05D005792 ORTHO05D007171 2.1e-31 140.6 104 62.5
HPP92_014386 Vanilla planifolia HOM05D005792 ORTHO05D007171 3.9e-30 136.3 113 56.6
Hund05135 Selenicereus undatus HOM05D005792 ORTHO05D007171 1.6e-28 131.0 278 32.0
SalBow6G2635 Salvia bowleyana HOM05D005792 ORTHO05D007171 3.2e-24 116.7 83 63.9
CBR_g22029 Chara braunii HOM05D005792 ORTHO05D007171 7.9e-23 112.1 142 45.8
SMO174G0016 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 8.4e-17 92.0 82 57.3
Sabra02G0010700 Salix brachista HOM05D000201 ORTHO05D000490 9.6e-13 78.6 60 63.3
Mapoly0033s0029 Marchantia polymorpha HOM05D005792 ORTHO05D007171 6.2e-12 75.9 161 31.1
COL.COLO4_12452 Corchorus olitorius HOM05D005792 ORTHO05D007171 8.1e-12 75.5 71 56.3
ATR0661G053 Amborella trichopoda HOM05D005792 ORTHO05D007171 1.4e-11 74.7 65 58.5
SMO174G0053 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 1.8e-11 74.3 77 49.4
Cpa.g.sc26.236 Carica papaya HOM05D005792 ORTHO05D007171 2.2e-09 67.4 36 86.1
SEGI_02138 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 1.0e-06 58.5 49 51.0


User provided reference genes

Program Settings